Wall clock time and date at job start Wed Apr 1 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 N 1.46499 * 109.47199 * 184.22524 * 3 2 1 5 5 C 1.34773 * 120.00039 * 84.17745 * 4 3 2 6 6 O 1.21621 * 119.99789 * 175.16399 * 5 4 3 7 7 C 1.43198 * 120.00302 * 354.88497 * 5 4 3 8 8 C 3.75093 * 107.31444 * 285.87370 * 2 1 3 9 9 C 4.72270 * 93.63278 * 279.37335 * 2 1 3 10 10 C 1.52992 * 117.50020 * 0.47124 * 9 8 7 11 11 C 1.52995 * 117.49933 * 291.84641 * 9 8 7 12 12 C 1.46505 * 119.99943 * 264.18113 * 4 3 2 13 13 H 1.08995 * 110.27567 * 186.36026 * 12 4 3 14 14 C 1.54601 * 110.30668 * 308.55234 * 12 4 3 15 15 C 1.54939 * 102.92186 * 96.95841 * 14 12 4 16 16 N 1.48541 * 103.22441 * 37.41290 * 15 14 12 17 17 C 1.46904 * 110.99583 * 200.27907 * 16 15 14 18 18 C 1.50695 * 109.47304 * 307.39498 * 17 16 15 19 19 O 1.21299 * 120.00095 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00376 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00559 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99841 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00153 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00223 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99793 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47300 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46738 * 120.00417 * 25 23 21 28 28 H 1.48503 * 109.46969 * 240.00082 * 25 23 21 29 29 C 1.47894 * 105.82035 * 320.79212 * 16 15 14 30 30 H 1.08998 * 109.47802 * 59.99937 * 1 2 3 31 31 H 1.09002 * 109.47482 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47275 * 299.99888 * 1 2 3 33 33 H 1.09005 * 109.46762 * 240.00115 * 2 1 3 34 34 H 1.09000 * 109.47258 * 120.00596 * 2 1 3 35 35 H 1.08995 * 109.46882 * 64.22563 * 3 2 1 36 36 H 1.09000 * 109.47249 * 304.22475 * 3 2 1 37 37 H 1.09010 * 115.54660 * 146.17764 * 9 8 7 38 38 H 1.08995 * 117.49935 * 359.97438 * 10 9 8 39 39 H 1.09004 * 117.50100 * 145.02063 * 10 9 8 40 40 H 1.09007 * 117.49772 * 214.97838 * 11 9 8 41 41 H 1.09002 * 117.50006 * 359.97438 * 11 9 8 42 42 H 1.08995 * 110.72311 * 215.31839 * 14 12 4 43 43 H 1.08996 * 110.72075 * 338.60429 * 14 12 4 44 44 H 1.09002 * 110.66685 * 278.98367 * 15 14 12 45 45 H 1.08994 * 110.81299 * 155.91581 * 15 14 12 46 46 H 1.08998 * 109.47480 * 67.39926 * 17 16 15 47 47 H 1.08999 * 109.46410 * 187.39667 * 17 16 15 48 48 H 0.97004 * 119.99305 * 359.97438 * 20 18 17 49 49 H 0.96996 * 120.00219 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.91821 * 265.97718 * 29 16 15 51 51 H 1.09004 * 109.91545 * 144.68177 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5014 1.4437 -0.1018 5 6 4.0929 1.3545 -1.3095 6 8 5.3023 1.4439 -1.4023 7 6 3.2980 1.1483 -2.4826 8 6 2.6463 0.9795 -3.4444 9 6 1.8292 0.7676 -4.6503 10 6 1.1054 1.9818 -5.2354 11 6 0.3114 0.8958 -4.5067 12 6 4.3200 1.5420 1.1093 13 1 5.3730 1.6419 0.8464 14 6 3.8633 2.7426 1.9697 15 6 2.9235 2.0849 3.0112 16 7 3.5891 0.7884 3.2986 17 6 2.6415 -0.1725 3.8790 18 6 1.9535 0.4539 5.0644 19 8 2.2255 1.5893 5.3933 20 7 1.0361 -0.2475 5.7593 21 6 0.4098 0.3225 6.8375 22 1 0.6520 1.3335 7.1303 23 6 -0.5364 -0.4004 7.5535 24 7 -0.8307 -1.6307 7.1976 25 14 -1.3891 0.3761 9.0230 26 1 -0.8836 1.7591 9.2148 27 1 -2.8539 0.4138 8.7822 28 1 -1.1080 -0.4274 10.2399 29 6 4.1066 0.3044 2.0005 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.7398 1.9339 0.9254 36 1 1.6162 1.9777 -0.8497 37 1 2.2074 0.0216 -5.3493 38 1 1.2338 2.9375 -4.7272 39 1 1.0072 2.0350 -6.3197 40 1 -0.3090 0.2345 -5.1116 41 1 -0.0822 1.1366 -3.5191 42 1 4.7158 3.2113 2.4611 43 1 3.3199 3.4671 1.3632 44 1 1.9325 1.9228 2.5870 45 1 2.8596 2.6929 3.9136 46 1 1.8980 -0.4468 3.1306 47 1 3.1795 -1.0642 4.2005 48 1 0.8184 -1.1554 5.4961 49 1 -1.4915 -2.1352 7.6972 50 1 3.3816 -0.3656 1.5382 51 1 5.0538 -0.2143 2.1485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714857036.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:09 Heat of formation + Delta-G solvation = 5.933834 kcal Electronic energy + Delta-G solvation = -31048.809076 eV Core-core repulsion = 26950.219606 eV Total energy + Delta-G solvation = -4098.589470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81397 -40.43807 -39.11056 -38.49873 -36.95482 -35.90997 -34.32204 -33.76921 -33.30775 -32.12268 -29.88230 -28.35371 -27.40158 -26.30472 -25.42518 -23.31832 -23.28643 -22.82185 -22.32560 -21.14735 -20.81684 -19.88989 -19.35657 -18.37624 -17.60962 -17.46898 -16.73838 -16.61416 -16.42883 -16.25908 -15.91940 -15.76131 -15.65821 -15.57966 -14.94172 -14.85745 -14.39954 -14.10417 -13.69634 -13.54206 -13.50737 -13.31740 -13.26663 -13.10287 -13.01649 -12.95149 -12.83591 -12.42140 -12.41094 -12.35609 -12.35414 -12.25052 -12.19330 -12.11261 -11.90298 -11.75679 -11.45574 -11.28412 -11.06710 -10.71510 -10.20256 -10.00022 -9.97238 -9.26878 -8.46259 -5.94377 0.34894 1.08252 1.36422 1.42452 1.56038 1.74852 2.03726 2.25885 2.28979 2.77232 2.88488 3.06131 3.20768 3.31322 3.50295 3.66614 3.74954 3.81769 3.87842 3.95974 4.03385 4.06839 4.13829 4.18573 4.29452 4.34510 4.39331 4.44267 4.48713 4.54982 4.57093 4.67197 4.76499 4.78903 4.82739 4.90981 4.97100 5.01954 5.08315 5.12371 5.16500 5.21634 5.25544 5.31421 5.37753 5.42911 5.83796 5.92383 6.07174 6.09156 6.13025 6.60761 6.81740 7.13668 7.55798 8.11346 8.71330 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.002434 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.922835 B =11501.219847 C =12791.648215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.101 3.899 4 N -0.585 5.585 5 C 0.636 3.364 6 O -0.565 6.565 7 C -0.259 4.259 8 C -0.023 4.023 9 C -0.088 4.088 10 C -0.152 4.152 11 C -0.149 4.149 12 C 0.135 3.865 13 H 0.107 0.893 14 C -0.123 4.123 15 C 0.039 3.961 16 N -0.505 5.505 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.611 6.611 20 N -0.572 5.572 21 C -0.328 4.328 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.022 3.978 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.067 0.933 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 2.019 -25.040 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.021 4.021 4 N -0.315 5.315 5 C 0.426 3.574 6 O -0.446 6.446 7 C -0.262 4.262 8 C -0.025 4.025 9 C -0.106 4.106 10 C -0.189 4.189 11 C -0.186 4.186 12 C 0.032 3.968 13 H 0.125 0.875 14 C -0.161 4.161 15 C -0.088 4.088 16 N -0.230 5.230 17 C -0.083 4.083 18 C 0.229 3.771 19 O -0.497 6.497 20 N -0.209 5.209 21 C -0.457 4.457 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.106 4.106 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.171 0.829 38 H 0.111 0.889 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.229 0.771 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.165 2.747 -24.351 24.534 hybrid contribution -0.959 -0.518 0.505 1.202 sum 0.206 2.229 -23.847 23.952 Atomic orbital electron populations 1.21672 0.93687 1.02723 1.02327 1.22059 0.97489 0.96050 1.02221 1.21961 0.77717 0.98272 1.04173 1.47903 1.07770 1.71022 1.04814 1.14916 0.85247 0.75847 0.81399 1.90812 1.15041 1.52180 1.86593 1.20353 1.00819 1.07899 0.97149 1.22038 0.95048 0.91479 0.93973 1.19271 0.93190 1.05355 0.92735 1.23222 1.00692 0.92723 1.02227 1.23240 0.90051 1.02085 1.03209 1.21939 0.96488 0.95224 0.83163 0.87482 1.22864 1.00465 0.96623 0.96188 1.23432 0.94881 0.91462 0.98995 1.64635 1.32804 1.02949 1.22614 1.21986 0.95037 0.96386 0.94874 1.20593 0.82563 0.87035 0.86895 1.90444 1.67315 1.20387 1.71580 1.41913 1.35878 1.15862 1.27210 1.19670 1.19452 0.99941 1.06660 0.90195 1.26010 0.97693 0.96003 1.01568 1.69674 1.34171 1.10227 1.42058 0.84901 0.77987 0.78144 0.77507 1.19763 1.19590 1.19843 1.23509 1.01984 0.96831 0.88313 0.91058 0.91742 0.93257 0.91668 0.92172 0.89222 0.89374 0.82858 0.88880 0.85193 0.85248 0.88482 0.89113 0.89467 0.94267 0.89743 0.91370 0.87607 0.77091 0.91354 0.91514 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.14 -2.67 5.76 30.59 0.18 -2.49 16 3 C 0.10 2.02 4.55 86.38 0.39 2.41 16 4 N -0.59 -13.87 2.37 -801.83 -1.90 -15.77 16 5 C 0.64 17.49 7.48 85.49 0.64 18.13 16 6 O -0.57 -19.39 16.46 -4.10 -0.07 -19.46 16 7 C -0.26 -6.10 11.07 30.01 0.33 -5.76 16 8 C -0.02 -0.42 13.47 31.12 0.42 0.00 16 9 C -0.09 -0.90 6.22 -12.60 -0.08 -0.97 16 10 C -0.15 -1.05 10.21 30.59 0.31 -0.74 16 11 C -0.15 -0.99 10.21 30.59 0.31 -0.68 16 12 C 0.14 3.40 3.44 45.87 0.16 3.56 16 13 H 0.11 2.87 6.98 -2.39 -0.02 2.86 16 14 C -0.12 -3.12 6.11 31.80 0.19 -2.92 16 15 C 0.04 1.26 4.93 86.65 0.43 1.69 16 16 N -0.51 -16.30 5.26 -887.57 -4.67 -20.97 16 17 C 0.05 1.66 5.52 85.55 0.47 2.14 16 18 C 0.44 20.40 7.49 87.66 0.66 21.06 16 19 O -0.61 -32.26 13.09 -3.09 -0.04 -32.30 16 20 N -0.57 -28.63 5.29 -306.99 -1.62 -30.25 16 21 C -0.33 -18.18 9.68 84.04 0.81 -17.37 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 25 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 C 0.02 0.57 6.25 86.45 0.54 1.11 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.06 1.25 7.37 -2.38 -0.02 1.23 16 34 H 0.06 1.30 5.06 -2.39 -0.01 1.28 16 35 H 0.09 1.94 4.49 -2.39 -0.01 1.93 16 36 H 0.09 1.55 7.25 -2.39 -0.02 1.53 16 37 H 0.15 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.13 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.09 1.98 7.71 -2.39 -0.02 1.96 16 44 H 0.04 1.23 5.84 -2.39 -0.01 1.22 16 45 H 0.08 3.39 5.96 -2.39 -0.01 3.37 16 46 H 0.07 2.07 7.23 -2.39 -0.02 2.06 16 47 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.40 18.92 7.90 -92.71 -0.73 18.18 16 49 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 50 H 0.07 1.63 4.22 -2.39 -0.01 1.62 16 51 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -70.04 409.19 1.20 -68.85 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.24 Total: 36.97 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.95 Total: 17.18 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -7.91 Total: -115.59 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.11 Total: -51.75 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -70.04 1.20 -68.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714857036.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.783 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds