Wall clock time and date at job start Wed Apr 1 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00149 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46993 * 89.99936 * 9 7 5 11 11 H 1.48502 * 109.46839 * 209.99703 * 9 7 5 12 12 H 1.48497 * 109.46942 * 329.99500 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 C 1.52999 * 109.47364 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46923 * 179.97438 * 17 16 14 19 19 N 1.46504 * 109.46860 * 180.02562 * 18 17 16 20 20 C 1.35760 * 119.62752 * 89.99699 * 19 18 17 21 21 C 1.35351 * 120.70164 * 179.97438 * 20 19 18 22 22 C 1.40197 * 119.94725 * 0.02562 * 21 20 19 23 23 C 1.36399 * 119.26471 * 0.02562 * 22 21 20 24 24 C 1.34667 * 119.61812 * 269.72996 * 19 18 17 25 25 O 1.22055 * 119.99014 * 359.97438 * 24 19 18 26 26 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 27 27 C 1.53006 * 117.51963 * 225.38598 * 26 2 1 28 28 C 1.53001 * 60.00094 * 107.48019 * 27 26 2 29 29 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 31 31 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 32 32 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 33 33 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 34 34 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 35 35 H 0.97000 * 120.00155 * 180.02562 * 8 7 5 36 36 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 38 38 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 39 39 H 1.08997 * 109.47253 * 299.99984 * 17 16 14 40 40 H 1.09004 * 109.46689 * 60.00039 * 17 16 14 41 41 H 1.08997 * 109.47148 * 299.99659 * 18 17 16 42 42 H 1.08991 * 109.47136 * 60.00284 * 18 17 16 43 43 H 1.07994 * 119.65132 * 0.02562 * 20 19 18 44 44 H 1.08000 * 120.02155 * 180.02562 * 21 20 19 45 45 H 1.08000 * 120.36553 * 179.97438 * 22 21 20 46 46 H 1.08001 * 120.34455 * 180.02562 * 23 22 21 47 47 H 1.09000 * 115.55486 * 79.68439 * 26 2 1 48 48 H 1.08993 * 117.49847 * 214.97187 * 27 26 2 49 49 H 1.08998 * 117.49500 * 359.97438 * 27 26 2 50 50 H 1.08999 * 117.50164 * 252.51582 * 28 27 26 51 51 H 1.09000 * 117.51765 * 107.48141 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0024 8 7 6.2358 1.4888 -0.0023 9 14 6.5116 4.2464 -0.0040 10 1 6.7602 4.6759 1.3957 11 1 7.8086 4.0685 -0.7049 12 1 5.7085 5.2809 -0.7040 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 6 1.9559 -0.0411 4.8875 18 6 2.5655 -0.6966 6.1284 19 7 2.1591 0.0475 7.3232 20 6 1.0200 -0.2998 7.9750 21 6 0.6243 0.3725 9.0811 22 6 1.3940 1.4401 9.5640 23 6 2.5376 1.7883 8.9071 24 6 2.9226 1.0649 7.7654 25 8 3.9468 1.3618 7.1717 26 6 2.0400 -0.7212 -1.2491 27 6 3.1742 -1.7321 -1.0683 28 6 1.7548 -2.2199 -1.3656 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6765 1.9564 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.9899 0.6026 -0.0006 35 1 7.2058 1.4888 -0.0027 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 2.3062 0.9882 4.8107 40 1 0.8690 -0.0500 4.9692 41 1 2.2148 -1.7257 6.2051 42 1 3.6523 -0.6882 6.0470 43 1 0.4236 -1.1217 7.6075 44 1 -0.2836 0.0865 9.5914 45 1 1.0845 1.9815 10.4457 46 1 3.1440 2.6076 9.2641 47 1 2.0307 -0.1343 -2.1676 48 1 3.9109 -1.8102 -1.8676 49 1 3.5574 -1.8832 -0.0591 50 1 1.2041 -2.6921 -0.5520 51 1 1.5575 -2.6189 -2.3605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715113879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:00 Heat of formation + Delta-G solvation = 4.435663 kcal Electronic energy + Delta-G solvation = -31195.250697 eV Core-core repulsion = 27096.596262 eV Total energy + Delta-G solvation = -4098.654435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.43567 -40.14171 -37.78558 -36.96676 -35.61595 -34.45479 -33.27102 -32.85294 -31.27599 -30.03277 -29.85265 -27.41841 -25.64834 -24.22465 -23.55718 -23.04218 -22.19412 -21.94884 -21.76698 -20.30353 -18.78249 -17.92635 -17.44908 -17.03355 -16.96142 -16.41437 -15.78418 -15.58748 -15.40425 -14.92225 -14.75334 -14.41532 -14.30782 -13.99751 -13.84286 -13.38930 -13.31708 -12.92454 -12.62842 -12.47255 -12.34511 -12.29284 -12.11862 -12.03897 -11.92963 -11.66533 -11.53666 -11.39064 -11.21615 -10.84752 -10.81546 -10.72558 -10.66347 -10.25779 -10.06654 -9.97773 -9.87829 -9.85468 -9.56284 -9.26499 -8.70187 -8.49722 -8.11253 -6.74666 -5.65746 -2.91061 0.66995 1.73724 2.48655 3.06722 3.49087 3.52521 3.58198 3.58275 3.59926 4.06749 4.32670 4.44338 4.68092 4.70342 4.73526 4.86035 4.90674 4.94836 5.05186 5.11625 5.14594 5.14741 5.21366 5.31146 5.40969 5.46244 5.62960 5.67535 5.71258 5.78657 5.79681 5.82769 5.90791 5.98712 6.04042 6.09174 6.19400 6.23125 6.24884 6.33420 6.37689 6.39142 6.44389 6.60054 6.65430 6.95866 6.96838 7.19473 7.82297 7.93591 7.98076 8.54529 8.67918 9.66469 10.25327 10.62401 11.57476 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.003206 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.978529 B = 8732.637895 C =11010.859423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.200 3.800 3 C 0.141 3.859 4 N -0.725 5.725 5 C -0.230 4.230 6 H 0.067 0.933 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.903 3.097 10 H -0.290 1.290 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.717 5.717 14 C 0.524 3.476 15 O -0.534 6.534 16 C -0.138 4.138 17 C -0.115 4.115 18 C 0.088 3.912 19 N -0.494 5.494 20 C 0.137 3.863 21 C -0.241 4.241 22 C -0.020 4.020 23 C -0.243 4.243 24 C 0.508 3.492 25 O -0.541 6.541 26 C -0.137 4.137 27 C -0.167 4.167 28 C -0.189 4.189 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.049 0.951 34 H 0.384 0.616 35 H 0.252 0.748 36 H 0.394 0.606 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.160 0.840 44 H 0.143 0.857 45 H 0.132 0.868 46 H 0.147 0.853 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.881 -12.957 13.440 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.114 3.886 3 C 0.013 3.987 4 N -0.369 5.369 5 C -0.361 4.361 6 H 0.085 0.915 7 C -0.210 4.210 8 N -0.585 5.585 9 Si 0.734 3.266 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.372 5.372 14 C 0.310 3.690 15 O -0.411 6.411 16 C -0.179 4.179 17 C -0.153 4.153 18 C -0.033 4.033 19 N -0.204 5.204 20 C 0.010 3.990 21 C -0.264 4.264 22 C -0.042 4.042 23 C -0.265 4.265 24 C 0.310 3.690 25 O -0.422 6.422 26 C -0.156 4.156 27 C -0.205 4.205 28 C -0.226 4.226 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.218 0.782 35 H 0.062 0.938 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.177 0.823 44 H 0.160 0.840 45 H 0.150 0.850 46 H 0.164 0.836 47 H 0.133 0.867 48 H 0.117 0.883 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.637 -11.878 13.077 22.942 hybrid contribution 1.036 0.236 -0.082 1.065 sum -13.602 -11.642 12.995 22.123 Atomic orbital electron populations 1.22080 0.94424 1.01459 1.03126 1.20050 0.93094 0.93255 0.82184 1.21113 0.86695 0.91569 0.99368 1.42213 0.99078 1.06266 1.89343 1.19234 0.89044 0.86256 1.41589 0.91506 1.24646 0.96261 0.96618 1.03498 1.69646 1.06520 1.23719 1.58629 0.86239 0.79391 0.83387 0.77548 1.21787 1.21912 1.20901 1.46179 1.58075 1.27333 1.05574 1.20255 0.80320 0.84098 0.84345 1.90632 1.38224 1.25821 1.86376 1.21548 1.03353 1.00049 0.92953 1.21599 1.01123 1.01388 0.91198 1.22105 1.03304 0.94799 0.83094 1.45600 1.20571 1.29393 1.24835 1.21964 0.86938 0.97889 0.92257 1.20617 1.04278 1.01353 1.00137 1.21411 0.92204 0.93423 0.97176 1.22169 1.01041 1.04883 0.98364 1.17228 0.84536 0.80666 0.86582 1.91032 1.24841 1.66928 1.59390 1.22409 1.03008 0.90829 0.99311 1.22897 0.91399 1.03170 1.03002 1.23014 0.99741 0.97365 1.02490 0.93072 0.90730 0.92013 0.96201 0.93321 0.78154 0.93811 0.76863 0.89348 0.88137 0.89810 0.90905 0.89140 0.87828 0.82257 0.83966 0.85003 0.83569 0.86732 0.88334 0.88783 0.89240 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.37 37.15 0.31 -1.92 16 2 C 0.20 3.33 0.52 -131.82 -0.07 3.26 16 3 C 0.14 3.08 4.89 -4.04 -0.02 3.06 16 4 N -0.72 -18.81 5.22 -59.90 -0.31 -19.13 16 5 C -0.23 -6.77 9.99 -15.06 -0.15 -6.92 16 6 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 7 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -28.73 13.06 55.49 0.72 -28.01 16 9 Si 0.90 23.69 29.55 -169.99 -5.02 18.66 16 10 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 11 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 13 N -0.72 -11.03 4.49 -47.61 -0.21 -11.25 16 14 C 0.52 8.62 7.24 -10.99 -0.08 8.54 16 15 O -0.53 -10.61 12.22 5.55 0.07 -10.54 16 16 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 17 C -0.11 -1.46 4.83 -26.73 -0.13 -1.59 16 18 C 0.09 0.91 5.34 -4.04 -0.02 0.88 16 19 N -0.49 -5.47 2.58 -119.77 -0.31 -5.77 16 20 C 0.14 1.02 10.28 -16.84 -0.17 0.85 16 21 C -0.24 -1.64 10.01 -39.88 -0.40 -2.04 16 22 C -0.02 -0.17 10.10 -39.51 -0.40 -0.56 16 23 C -0.24 -2.80 9.99 -39.38 -0.39 -3.19 16 24 C 0.51 7.42 7.41 -15.44 -0.11 7.30 16 25 O -0.54 -10.48 16.64 4.87 0.08 -10.40 16 26 C -0.14 -2.08 4.48 -90.62 -0.41 -2.49 16 27 C -0.17 -2.41 8.98 -26.73 -0.24 -2.65 16 28 C -0.19 -2.23 9.53 -26.73 -0.25 -2.49 16 29 H 0.05 0.64 7.72 -51.93 -0.40 0.24 16 30 H 0.07 1.22 6.37 -51.93 -0.33 0.89 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 1.19 5.99 -51.93 -0.31 0.88 16 34 H 0.38 10.08 6.43 -40.82 -0.26 9.81 16 35 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.39 5.21 5.64 -40.82 -0.23 4.98 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 40 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.09 0.56 8.01 -51.93 -0.42 0.15 16 42 H 0.10 1.26 7.38 -51.93 -0.38 0.88 16 43 H 0.16 0.59 8.04 -52.49 -0.42 0.17 16 44 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 46 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 48 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 49 H 0.09 1.35 5.96 -51.93 -0.31 1.04 16 50 H 0.09 0.95 7.99 -51.93 -0.42 0.54 16 51 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 411.27 15.07 6.20 6.20 Total: -1.00 -38.25 411.27 -9.68 -47.93 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -8.10 Total: 14.66 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.79 Total: -2.35 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.11 Total: -64.16 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.15 Total: -20.95 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.02 Total: 18.66 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -38.25 -9.68 -47.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715113879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.364 kcal (2) G-P(sol) polarization free energy of solvation -38.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds