Wall clock time and date at job start Wed Apr 1 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00149 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46993 * 89.99936 * 9 7 5 11 11 H 1.48502 * 109.46839 * 209.99703 * 9 7 5 12 12 H 1.48497 * 109.46942 * 329.99500 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 C 1.52999 * 109.47364 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46923 * 179.97438 * 17 16 14 19 19 N 1.46504 * 109.46860 * 180.02562 * 18 17 16 20 20 C 1.35760 * 119.62752 * 89.99699 * 19 18 17 21 21 C 1.35351 * 120.70164 * 179.97438 * 20 19 18 22 22 C 1.40197 * 119.94725 * 0.02562 * 21 20 19 23 23 C 1.36399 * 119.26471 * 0.02562 * 22 21 20 24 24 C 1.34667 * 119.61812 * 269.72996 * 19 18 17 25 25 O 1.22055 * 119.99014 * 359.97438 * 24 19 18 26 26 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 27 27 C 1.53006 * 117.51963 * 225.38598 * 26 2 1 28 28 C 1.53001 * 60.00094 * 107.48019 * 27 26 2 29 29 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 31 31 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 32 32 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 33 33 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 34 34 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 35 35 H 0.97000 * 120.00155 * 180.02562 * 8 7 5 36 36 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 38 38 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 39 39 H 1.08997 * 109.47253 * 299.99984 * 17 16 14 40 40 H 1.09004 * 109.46689 * 60.00039 * 17 16 14 41 41 H 1.08997 * 109.47148 * 299.99659 * 18 17 16 42 42 H 1.08991 * 109.47136 * 60.00284 * 18 17 16 43 43 H 1.07994 * 119.65132 * 0.02562 * 20 19 18 44 44 H 1.08000 * 120.02155 * 180.02562 * 21 20 19 45 45 H 1.08000 * 120.36553 * 179.97438 * 22 21 20 46 46 H 1.08001 * 120.34455 * 180.02562 * 23 22 21 47 47 H 1.09000 * 115.55486 * 79.68439 * 26 2 1 48 48 H 1.08993 * 117.49847 * 214.97187 * 27 26 2 49 49 H 1.08998 * 117.49500 * 359.97438 * 27 26 2 50 50 H 1.08999 * 117.50164 * 252.51582 * 28 27 26 51 51 H 1.09000 * 117.51765 * 107.48141 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0024 8 7 6.2358 1.4888 -0.0023 9 14 6.5116 4.2464 -0.0040 10 1 6.7602 4.6759 1.3957 11 1 7.8086 4.0685 -0.7049 12 1 5.7085 5.2809 -0.7040 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 6 1.9559 -0.0411 4.8875 18 6 2.5655 -0.6966 6.1284 19 7 2.1591 0.0475 7.3232 20 6 1.0200 -0.2998 7.9750 21 6 0.6243 0.3725 9.0811 22 6 1.3940 1.4401 9.5640 23 6 2.5376 1.7883 8.9071 24 6 2.9226 1.0649 7.7654 25 8 3.9468 1.3618 7.1717 26 6 2.0400 -0.7212 -1.2491 27 6 3.1742 -1.7321 -1.0683 28 6 1.7548 -2.2199 -1.3656 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6765 1.9564 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.9899 0.6026 -0.0006 35 1 7.2058 1.4888 -0.0027 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 2.3062 0.9882 4.8107 40 1 0.8690 -0.0500 4.9692 41 1 2.2148 -1.7257 6.2051 42 1 3.6523 -0.6882 6.0470 43 1 0.4236 -1.1217 7.6075 44 1 -0.2836 0.0865 9.5914 45 1 1.0845 1.9815 10.4457 46 1 3.1440 2.6076 9.2641 47 1 2.0307 -0.1343 -2.1676 48 1 3.9109 -1.8102 -1.8676 49 1 3.5574 -1.8832 -0.0591 50 1 1.2041 -2.6921 -0.5520 51 1 1.5575 -2.6189 -2.3605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715113879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:59 Heat of formation + Delta-G solvation = -22.204688 kcal Electronic energy + Delta-G solvation = -31196.405909 eV Core-core repulsion = 27096.596262 eV Total energy + Delta-G solvation = -4099.809648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.30562 -41.45508 -39.04559 -37.98426 -36.52098 -36.25071 -34.79792 -33.92111 -32.98555 -31.56162 -30.77213 -28.37850 -27.48962 -25.18007 -24.76224 -24.29583 -23.75771 -23.13570 -22.71590 -21.47152 -20.20464 -19.17257 -18.87271 -18.28047 -18.03483 -17.24383 -17.04957 -16.71182 -16.68695 -16.33826 -15.96669 -15.66180 -15.51509 -15.23352 -15.09863 -14.98010 -14.84027 -14.05925 -13.98136 -13.89622 -13.70884 -13.38259 -13.26169 -13.07898 -12.92843 -12.87316 -12.80499 -12.66603 -12.57167 -12.47273 -12.28591 -12.21188 -12.04885 -11.84153 -11.80252 -11.13519 -11.10027 -11.02647 -10.99467 -10.94789 -10.50089 -9.86490 -8.95052 -8.94236 -7.98100 -5.22750 -0.04886 0.94583 1.38357 1.42344 1.48715 1.66421 1.78403 2.33554 2.51922 2.71410 2.96156 3.34505 3.60106 3.66204 3.74198 3.79171 3.83747 3.96610 3.99159 4.01022 4.10610 4.15325 4.28761 4.30240 4.34157 4.44554 4.49577 4.57799 4.60066 4.64413 4.70245 4.79424 4.86978 4.87304 4.97333 5.03591 5.06203 5.09007 5.17228 5.21029 5.24276 5.26578 5.31786 5.36944 5.41459 5.44339 5.71396 5.75153 6.13431 6.25512 6.69906 7.02294 7.33336 7.42068 8.09866 8.40857 9.24615 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.003206 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.978529 B = 8732.637895 C =11010.859423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.208 3.792 3 C 0.140 3.860 4 N -0.727 5.727 5 C -0.246 4.246 6 H 0.059 0.941 7 C -0.066 4.066 8 N -0.959 5.959 9 Si 0.962 3.038 10 H -0.296 1.296 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.710 5.710 14 C 0.511 3.489 15 O -0.575 6.575 16 C -0.130 4.130 17 C -0.104 4.104 18 C 0.092 3.908 19 N -0.494 5.494 20 C 0.135 3.865 21 C -0.235 4.235 22 C 0.008 3.992 23 C -0.293 4.293 24 C 0.485 3.515 25 O -0.619 6.619 26 C -0.162 4.162 27 C -0.183 4.183 28 C -0.141 4.141 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.014 0.986 33 H 0.020 0.980 34 H 0.382 0.618 35 H 0.251 0.749 36 H 0.407 0.593 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.019 0.981 40 H 0.086 0.914 41 H 0.150 0.850 42 H 0.075 0.925 43 H 0.211 0.789 44 H 0.187 0.813 45 H 0.167 0.833 46 H 0.135 0.865 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.112 0.888 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.982 -16.344 14.433 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.122 3.878 3 C 0.012 3.988 4 N -0.371 5.371 5 C -0.378 4.378 6 H 0.077 0.923 7 C -0.259 4.259 8 N -0.609 5.609 9 Si 0.792 3.208 10 H -0.224 1.224 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.365 5.365 14 C 0.299 3.701 15 O -0.455 6.455 16 C -0.170 4.170 17 C -0.142 4.142 18 C -0.029 4.029 19 N -0.202 5.202 20 C 0.008 3.992 21 C -0.257 4.257 22 C -0.013 4.013 23 C -0.315 4.315 24 C 0.290 3.710 25 O -0.508 6.508 26 C -0.180 4.180 27 C -0.221 4.221 28 C -0.178 4.178 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.216 0.784 35 H 0.060 0.940 36 H 0.246 0.754 37 H 0.164 0.836 38 H 0.106 0.894 39 H 0.038 0.962 40 H 0.104 0.896 41 H 0.168 0.832 42 H 0.093 0.907 43 H 0.227 0.773 44 H 0.204 0.796 45 H 0.184 0.816 46 H 0.153 0.847 47 H 0.117 0.883 48 H 0.106 0.894 49 H 0.110 0.890 50 H 0.131 0.869 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.797 -15.308 14.075 27.371 hybrid contribution 1.842 1.293 -0.335 2.275 sum -15.955 -14.015 13.740 25.294 Atomic orbital electron populations 1.21988 0.92447 1.03188 1.02446 1.19839 0.94387 0.90068 0.83533 1.21177 0.84462 0.95709 0.97457 1.42265 1.00702 1.05126 1.89006 1.19524 0.89746 0.87271 1.41267 0.92325 1.25359 0.96993 0.99750 1.03837 1.69764 1.06474 1.25264 1.59443 0.85303 0.78310 0.80115 0.77064 1.22410 1.21198 1.19761 1.46135 1.57782 1.27547 1.04999 1.21048 0.79769 0.83697 0.85611 1.90619 1.40215 1.27583 1.87042 1.21580 1.02274 1.02623 0.90572 1.21455 1.01720 0.98177 0.92887 1.22161 1.01801 0.97145 0.81808 1.45626 1.21280 1.28376 1.24920 1.22903 0.85434 0.98872 0.91955 1.21233 1.04970 0.99878 0.99635 1.21885 0.89892 0.92795 0.96770 1.22091 1.03689 1.06315 0.99364 1.17762 0.84305 0.81664 0.87245 1.90967 1.28250 1.69597 1.61962 1.22278 1.05083 0.92829 0.97848 1.22911 0.92575 1.03902 1.02677 1.23098 0.96769 0.93544 1.04371 0.89981 0.92767 0.91370 0.96802 0.96259 0.78413 0.94040 0.75372 0.83559 0.89366 0.96152 0.89573 0.83186 0.90675 0.77282 0.79624 0.81591 0.84667 0.88277 0.89387 0.88965 0.86935 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.37 71.98 0.60 -3.37 16 2 C 0.21 6.88 0.52 3.60 0.00 6.88 16 3 C 0.14 6.39 4.89 86.38 0.42 6.82 16 4 N -0.73 -39.35 5.22 -343.44 -1.79 -41.14 16 5 C -0.25 -15.04 9.99 84.03 0.84 -14.20 16 6 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 8 N -0.96 -60.30 13.06 21.65 0.28 -60.02 16 9 Si 0.96 50.03 29.55 68.60 2.03 52.06 16 10 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 11 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 13 N -0.71 -21.33 4.49 -422.94 -1.90 -23.23 16 14 C 0.51 16.88 7.24 87.66 0.63 17.52 16 15 O -0.57 -23.79 12.22 -3.04 -0.04 -23.83 16 16 C -0.13 -3.11 5.70 29.85 0.17 -2.94 16 17 C -0.10 -2.67 4.83 30.60 0.15 -2.52 16 18 C 0.09 1.81 5.34 86.38 0.46 2.27 16 19 N -0.49 -10.68 2.58 -650.97 -1.68 -12.36 16 20 C 0.13 1.48 10.28 83.42 0.86 2.34 16 21 C -0.24 -2.17 10.01 22.08 0.22 -1.95 16 22 C 0.01 0.12 10.10 22.32 0.23 0.34 16 23 C -0.29 -7.20 9.99 22.40 0.22 -6.98 16 24 C 0.48 15.38 7.41 84.82 0.63 16.01 16 25 O -0.62 -27.19 16.64 -5.49 -0.09 -27.28 16 26 C -0.16 -4.76 4.48 -10.79 -0.05 -4.81 16 27 C -0.18 -5.05 8.98 30.60 0.27 -4.78 16 28 C -0.14 -2.83 9.53 30.60 0.29 -2.54 16 29 H 0.08 1.78 7.72 -2.39 -0.02 1.76 16 30 H 0.05 1.76 6.37 -2.39 -0.02 1.74 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.02 1.01 5.99 -2.39 -0.01 1.00 16 34 H 0.38 20.74 6.43 -92.71 -0.60 20.14 16 35 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.41 10.04 5.64 -92.71 -0.52 9.52 16 37 H 0.15 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.02 0.76 8.10 -2.39 -0.02 0.74 16 40 H 0.09 1.95 8.10 -2.38 -0.02 1.93 16 41 H 0.15 1.16 8.01 -2.39 -0.02 1.14 16 42 H 0.07 1.95 7.38 -2.39 -0.02 1.93 16 43 H 0.21 0.16 8.04 -2.91 -0.02 0.14 16 44 H 0.19 0.21 8.06 -2.91 -0.02 0.18 16 45 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 46 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 47 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 49 H 0.09 2.55 5.96 -2.39 -0.01 2.53 16 50 H 0.11 1.80 7.99 -2.39 -0.02 1.78 16 51 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -94.62 411.27 3.05 -91.57 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -0.18 Total: 39.74 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.42 Total: 4.49 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -5.09 Total: -136.76 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.13 Total: -51.10 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.03 Total: 52.06 kcal Total: -94.62 3.05 -91.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715113879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.367 kcal (2) G-P(sol) polarization free energy of solvation -94.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds