Wall clock time and date at job start Wed Apr 1 2020 04:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47118 * 10.01161 * 3 2 1 5 5 C 1.34778 * 120.00185 * 90.00470 * 4 3 2 6 6 O 1.21275 * 119.99974 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.99779 * 359.97438 * 5 4 3 8 8 C 1.52999 * 109.47108 * 180.02562 * 7 5 4 9 9 H 1.09008 * 109.60347 * 54.99808 * 8 7 5 10 10 C 1.53345 * 109.60686 * 175.32407 * 8 7 5 11 11 C 1.53004 * 108.46339 * 187.11672 * 10 8 7 12 12 C 1.50171 * 110.00577 * 311.36181 * 11 10 8 13 13 O 1.21280 * 118.24750 * 197.45314 * 12 11 10 14 14 N 1.33349 * 123.50830 * 17.47364 * 12 11 10 15 15 C 1.45759 * 124.10644 * 357.75328 * 14 12 11 16 16 C 1.46498 * 120.00121 * 269.99662 * 4 3 2 17 17 C 1.53040 * 109.45871 * 60.02808 * 16 4 3 18 18 C 1.53192 * 109.31363 * 178.59885 * 17 16 4 19 19 N 1.46930 * 108.76118 * 54.66367 * 18 17 16 20 20 C 1.36934 * 120.63245 * 126.36313 * 19 18 17 21 21 H 1.08000 * 119.99739 * 331.85893 * 20 19 18 22 22 C 1.38808 * 120.00198 * 151.85907 * 20 19 18 23 23 N 1.31629 * 119.99777 * 343.05824 * 22 20 19 24 24 Si 1.86801 * 120.00350 * 163.06079 * 22 20 19 25 25 H 1.48503 * 109.46667 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47317 * 119.99560 * 24 22 20 27 27 H 1.48500 * 109.47273 * 239.99943 * 24 22 20 28 28 C 1.46927 * 118.73622 * 306.37513 * 19 18 17 29 29 C 1.53042 * 109.45986 * 299.97932 * 16 4 3 30 30 H 4.40640 * 5.51432 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46798 * 250.01048 * 3 2 1 32 32 H 1.09006 * 109.46754 * 130.01118 * 3 2 1 33 33 H 1.09007 * 109.47139 * 300.00069 * 7 5 4 34 34 H 1.08997 * 109.47568 * 60.00123 * 7 5 4 35 35 H 1.09004 * 109.66909 * 307.02005 * 10 8 7 36 36 H 1.08992 * 109.67433 * 67.54803 * 10 8 7 37 37 H 1.09007 * 109.43356 * 191.14473 * 11 10 8 38 38 H 1.08997 * 109.25764 * 71.47569 * 11 10 8 39 39 H 0.97002 * 117.95288 * 177.77656 * 14 12 11 40 40 H 1.08997 * 109.30404 * 258.78466 * 15 14 12 41 41 H 1.08999 * 109.29831 * 139.41012 * 15 14 12 42 42 H 1.08997 * 109.46666 * 180.02562 * 16 4 3 43 43 H 1.09004 * 109.49950 * 298.57107 * 17 16 4 44 44 H 1.09002 * 109.49596 * 58.66585 * 17 16 4 45 45 H 1.08991 * 109.60155 * 294.86889 * 18 17 16 46 46 H 1.09006 * 109.70025 * 174.50406 * 18 17 16 47 47 H 0.96998 * 119.99636 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.58827 * 293.82632 * 28 19 18 49 49 H 1.08996 * 109.70100 * 173.47203 * 28 19 18 50 50 H 1.09004 * 109.49653 * 301.32868 * 29 16 4 51 51 H 1.08993 * 109.50088 * 61.43109 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3593 -0.2401 5 6 3.3599 -1.7819 -1.5000 6 8 3.7651 -2.9076 -1.6987 7 6 3.1079 -0.8557 -2.6617 8 6 3.4392 -1.5767 -3.9699 9 1 2.8750 -2.5076 -4.0275 10 6 3.0740 -0.6794 -5.1587 11 6 3.2466 -1.4873 -6.4465 12 6 4.5808 -2.1767 -6.4456 13 8 5.0153 -2.5875 -7.5007 14 7 5.3131 -2.3616 -5.3467 15 6 4.9370 -1.8803 -4.0233 16 6 3.3796 -2.2598 0.8892 17 6 2.0781 -2.4672 1.6671 18 6 2.3296 -3.4367 2.8263 19 7 3.4422 -2.9244 3.6378 20 6 3.2974 -2.7475 4.9880 21 1 2.3232 -2.5361 5.4034 22 6 4.4027 -2.8398 5.8226 23 7 5.5063 -3.4137 5.3921 24 14 4.3240 -2.1498 7.5567 25 1 2.9818 -1.5602 7.7943 26 1 4.5662 -3.2405 8.5349 27 1 5.3612 -1.0996 7.7191 28 6 4.7131 -2.6053 2.9731 29 6 4.4347 -1.6454 1.8120 30 1 -1.0498 -0.0004 -0.0003 31 1 3.0092 0.3521 0.9658 32 1 3.0090 0.6616 -0.7872 33 1 2.0596 -0.5569 -2.6674 34 1 3.7373 0.0288 -2.5645 35 1 2.0391 -0.3500 -5.0654 36 1 3.7348 0.1871 -5.1810 37 1 3.1852 -0.8186 -7.3051 38 1 2.4540 -2.2326 -6.5123 39 1 6.1487 -2.8466 -5.4334 40 1 5.4968 -0.9728 -3.7974 41 1 5.1769 -2.6419 -3.2813 42 1 3.7377 -3.2198 0.5173 43 1 1.7331 -1.5110 2.0606 44 1 1.3199 -2.8830 1.0035 45 1 2.5873 -4.4194 2.4317 46 1 1.4335 -3.5136 3.4420 47 1 6.2785 -3.4785 5.9755 48 1 5.1651 -3.5203 2.5904 49 1 5.3908 -2.1324 3.6837 50 1 5.3541 -1.4762 1.2515 51 1 4.0673 -0.6971 2.2040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716807392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:33 Heat of formation + Delta-G solvation = -1.825992 kcal Electronic energy + Delta-G solvation = -31353.867468 eV Core-core repulsion = 27254.941507 eV Total energy + Delta-G solvation = -4098.925961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.82363 -40.00375 -37.85910 -36.72086 -35.73568 -33.71738 -33.17244 -32.29212 -31.61223 -30.22164 -29.67275 -27.41177 -27.04073 -25.10115 -24.60178 -22.65358 -22.26143 -21.68968 -19.76936 -19.40580 -19.26984 -18.05403 -17.44515 -17.10779 -16.78008 -16.38614 -16.21335 -15.66402 -15.44289 -14.91536 -14.63537 -14.42745 -13.92096 -13.85792 -13.82183 -13.58368 -13.54183 -13.44538 -13.17062 -12.94202 -12.81243 -12.43532 -12.33091 -11.88713 -11.64592 -11.51079 -11.35125 -11.22932 -11.21832 -11.01727 -10.78811 -10.59814 -10.46774 -10.25871 -10.17916 -10.13554 -9.98863 -9.86388 -9.74939 -9.52317 -9.24070 -8.68977 -8.45789 -6.73132 -5.83701 -3.26337 2.36146 2.43517 2.59243 2.71487 3.08759 3.25678 3.33535 3.41646 3.43521 4.15591 4.22627 4.26249 4.31217 4.41515 4.45312 4.62736 4.88221 4.95214 5.05266 5.07714 5.19042 5.24116 5.28062 5.33161 5.37935 5.42202 5.42711 5.45495 5.47703 5.54328 5.75121 5.81187 5.81270 5.91314 6.01637 6.13947 6.25892 6.44145 6.48880 6.54567 6.55387 6.72152 6.79400 6.91570 7.12614 7.27118 7.38826 7.49514 7.59823 7.75601 7.99630 8.13678 8.40079 9.16322 9.79315 10.36117 11.25073 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.002377 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.177974 B =11774.828350 C =12704.848717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.203 4.203 3 C 0.213 3.787 4 N -0.600 5.600 5 C 0.513 3.487 6 O -0.536 6.536 7 C -0.135 4.135 8 C -0.088 4.088 9 H 0.090 0.910 10 C -0.120 4.120 11 C -0.134 4.134 12 C 0.518 3.482 13 O -0.566 6.566 14 N -0.715 5.715 15 C 0.107 3.893 16 C 0.144 3.856 17 C -0.134 4.134 18 C 0.147 3.853 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.174 3.826 29 C -0.146 4.146 30 H 0.215 0.785 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.400 0.600 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.091 0.909 50 H 0.053 0.947 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 10.495 -18.082 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.204 4.204 3 C 0.091 3.909 4 N -0.331 5.331 5 C 0.301 3.699 6 O -0.413 6.413 7 C -0.176 4.176 8 C -0.107 4.107 9 H 0.108 0.892 10 C -0.158 4.158 11 C -0.174 4.174 12 C 0.305 3.695 13 O -0.446 6.446 14 N -0.366 5.366 15 C -0.017 4.017 16 C 0.043 3.957 17 C -0.174 4.174 18 C 0.020 3.980 19 N -0.314 5.314 20 C -0.382 4.382 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.048 3.952 29 C -0.186 4.186 30 H 0.232 0.768 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.235 0.765 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.109 0.891 50 H 0.071 0.929 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.120 9.763 -18.586 21.868 hybrid contribution -0.006 0.282 1.151 1.185 sum -6.127 10.045 -17.435 21.034 Atomic orbital electron populations 1.24913 0.95901 0.98877 1.00886 1.23532 0.94879 1.01387 1.00595 1.18424 0.83771 0.84441 1.04292 1.48305 1.64439 1.13717 1.06685 1.20622 0.77212 0.88161 0.83916 1.90677 1.45795 1.20413 1.84444 1.21757 1.04357 0.99035 0.92402 1.21210 0.96315 0.99904 0.93295 0.89154 1.21742 1.02994 0.98173 0.92855 1.21605 0.94969 1.00772 1.00049 1.20193 0.87048 0.79131 0.83159 1.90755 1.71706 1.51831 1.30303 1.45476 1.25108 1.57822 1.08184 1.21674 0.95030 1.01024 0.83995 1.21258 0.96336 0.93589 0.84524 1.22346 0.95722 1.01368 0.98006 1.20874 0.92348 0.93489 0.91269 1.44089 1.09358 1.74034 1.03967 1.19208 0.94803 1.42020 0.82128 0.91646 1.25059 0.97459 0.99335 0.97783 1.70039 1.03933 1.44387 1.36274 0.86239 0.77526 0.78535 0.84566 1.20276 1.21705 1.21551 1.20747 0.88761 0.94503 0.91232 1.22585 0.96832 1.00990 0.98204 0.76789 0.87331 0.88366 0.88189 0.88453 0.90163 0.90908 0.88095 0.88170 0.76502 0.91978 0.88169 0.88442 0.92017 0.93192 0.96298 0.92547 0.93623 0.96146 0.89099 0.92878 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.20 -2.14 11.92 -37.12 -0.44 -2.58 16 3 C 0.21 2.09 5.15 -6.83 -0.04 2.05 16 4 N -0.60 -7.48 2.37 -169.37 -0.40 -7.88 16 5 C 0.51 6.12 7.42 -10.99 -0.08 6.04 16 6 O -0.54 -8.27 13.35 5.56 0.07 -8.19 16 7 C -0.14 -0.99 3.73 -27.88 -0.10 -1.10 16 8 C -0.09 -0.67 1.89 -90.48 -0.17 -0.84 16 9 H 0.09 0.85 7.94 -51.92 -0.41 0.44 16 10 C -0.12 -0.68 5.33 -26.55 -0.14 -0.82 16 11 C -0.13 -0.98 6.03 -28.14 -0.17 -1.15 16 12 C 0.52 5.66 7.72 -11.88 -0.09 5.57 16 13 O -0.57 -8.56 17.78 5.56 0.10 -8.46 16 14 N -0.72 -6.81 5.45 -61.39 -0.33 -7.14 16 15 C 0.11 0.91 6.11 -4.48 -0.03 0.89 16 16 C 0.14 2.33 2.48 -67.89 -0.17 2.16 16 17 C -0.13 -2.27 4.73 -26.61 -0.13 -2.39 16 18 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 19 N -0.59 -14.27 2.99 -172.32 -0.52 -14.79 16 20 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 21 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -25.58 11.20 55.49 0.62 -24.96 16 24 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 29 C -0.15 -2.55 5.31 -26.61 -0.14 -2.69 16 30 H 0.22 1.42 7.80 -54.10 -0.42 1.00 16 31 H 0.11 1.13 6.46 -51.93 -0.34 0.79 16 32 H 0.10 0.63 6.44 -51.93 -0.33 0.29 16 33 H 0.10 0.64 7.95 -51.93 -0.41 0.22 16 34 H 0.10 0.51 7.37 -51.93 -0.38 0.12 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 3.64 8.80 -40.82 -0.36 3.28 16 40 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 41 H 0.10 1.07 6.19 -51.93 -0.32 0.75 16 42 H 0.10 1.81 6.90 -51.93 -0.36 1.45 16 43 H 0.06 1.05 7.02 -51.93 -0.36 0.69 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 50 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.06 0.98 6.72 -51.93 -0.35 0.63 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -33.61 400.46 -8.99 -42.60 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.13 Total: 2.73 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.41 Total: 3.95 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.63 Total: -54.77 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.17 Total: -16.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.61 -8.99 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716807392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.775 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds