Wall clock time and date at job start Wed Apr 1 2020 04:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47118 * 10.01161 * 3 2 1 5 5 C 1.34778 * 120.00185 * 90.00470 * 4 3 2 6 6 O 1.21275 * 119.99974 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.99779 * 359.97438 * 5 4 3 8 8 C 1.52999 * 109.47108 * 180.02562 * 7 5 4 9 9 H 1.09008 * 109.60347 * 54.99808 * 8 7 5 10 10 C 1.53345 * 109.60686 * 175.32407 * 8 7 5 11 11 C 1.53004 * 108.46339 * 187.11672 * 10 8 7 12 12 C 1.50171 * 110.00577 * 311.36181 * 11 10 8 13 13 O 1.21280 * 118.24750 * 197.45314 * 12 11 10 14 14 N 1.33349 * 123.50830 * 17.47364 * 12 11 10 15 15 C 1.45759 * 124.10644 * 357.75328 * 14 12 11 16 16 C 1.46498 * 120.00121 * 269.99662 * 4 3 2 17 17 C 1.53040 * 109.45871 * 60.02808 * 16 4 3 18 18 C 1.53192 * 109.31363 * 178.59885 * 17 16 4 19 19 N 1.46930 * 108.76118 * 54.66367 * 18 17 16 20 20 C 1.36934 * 120.63245 * 126.36313 * 19 18 17 21 21 H 1.08000 * 119.99739 * 331.85893 * 20 19 18 22 22 C 1.38808 * 120.00198 * 151.85907 * 20 19 18 23 23 N 1.31629 * 119.99777 * 343.05824 * 22 20 19 24 24 Si 1.86801 * 120.00350 * 163.06079 * 22 20 19 25 25 H 1.48503 * 109.46667 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47317 * 119.99560 * 24 22 20 27 27 H 1.48500 * 109.47273 * 239.99943 * 24 22 20 28 28 C 1.46927 * 118.73622 * 306.37513 * 19 18 17 29 29 C 1.53042 * 109.45986 * 299.97932 * 16 4 3 30 30 H 4.40640 * 5.51432 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46798 * 250.01048 * 3 2 1 32 32 H 1.09006 * 109.46754 * 130.01118 * 3 2 1 33 33 H 1.09007 * 109.47139 * 300.00069 * 7 5 4 34 34 H 1.08997 * 109.47568 * 60.00123 * 7 5 4 35 35 H 1.09004 * 109.66909 * 307.02005 * 10 8 7 36 36 H 1.08992 * 109.67433 * 67.54803 * 10 8 7 37 37 H 1.09007 * 109.43356 * 191.14473 * 11 10 8 38 38 H 1.08997 * 109.25764 * 71.47569 * 11 10 8 39 39 H 0.97002 * 117.95288 * 177.77656 * 14 12 11 40 40 H 1.08997 * 109.30404 * 258.78466 * 15 14 12 41 41 H 1.08999 * 109.29831 * 139.41012 * 15 14 12 42 42 H 1.08997 * 109.46666 * 180.02562 * 16 4 3 43 43 H 1.09004 * 109.49950 * 298.57107 * 17 16 4 44 44 H 1.09002 * 109.49596 * 58.66585 * 17 16 4 45 45 H 1.08991 * 109.60155 * 294.86889 * 18 17 16 46 46 H 1.09006 * 109.70025 * 174.50406 * 18 17 16 47 47 H 0.96998 * 119.99636 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.58827 * 293.82632 * 28 19 18 49 49 H 1.08996 * 109.70100 * 173.47203 * 28 19 18 50 50 H 1.09004 * 109.49653 * 301.32868 * 29 16 4 51 51 H 1.08993 * 109.50088 * 61.43109 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3593 -0.2401 5 6 3.3599 -1.7819 -1.5000 6 8 3.7651 -2.9076 -1.6987 7 6 3.1079 -0.8557 -2.6617 8 6 3.4392 -1.5767 -3.9699 9 1 2.8750 -2.5076 -4.0275 10 6 3.0740 -0.6794 -5.1587 11 6 3.2466 -1.4873 -6.4465 12 6 4.5808 -2.1767 -6.4456 13 8 5.0153 -2.5875 -7.5007 14 7 5.3131 -2.3616 -5.3467 15 6 4.9370 -1.8803 -4.0233 16 6 3.3796 -2.2598 0.8892 17 6 2.0781 -2.4672 1.6671 18 6 2.3296 -3.4367 2.8263 19 7 3.4422 -2.9244 3.6378 20 6 3.2974 -2.7475 4.9880 21 1 2.3232 -2.5361 5.4034 22 6 4.4027 -2.8398 5.8226 23 7 5.5063 -3.4137 5.3921 24 14 4.3240 -2.1498 7.5567 25 1 2.9818 -1.5602 7.7943 26 1 4.5662 -3.2405 8.5349 27 1 5.3612 -1.0996 7.7191 28 6 4.7131 -2.6053 2.9731 29 6 4.4347 -1.6454 1.8120 30 1 -1.0498 -0.0004 -0.0003 31 1 3.0092 0.3521 0.9658 32 1 3.0090 0.6616 -0.7872 33 1 2.0596 -0.5569 -2.6674 34 1 3.7373 0.0288 -2.5645 35 1 2.0391 -0.3500 -5.0654 36 1 3.7348 0.1871 -5.1810 37 1 3.1852 -0.8186 -7.3051 38 1 2.4540 -2.2326 -6.5123 39 1 6.1487 -2.8466 -5.4334 40 1 5.4968 -0.9728 -3.7974 41 1 5.1769 -2.6419 -3.2813 42 1 3.7377 -3.2198 0.5173 43 1 1.7331 -1.5110 2.0606 44 1 1.3199 -2.8830 1.0035 45 1 2.5873 -4.4194 2.4317 46 1 1.4335 -3.5136 3.4420 47 1 6.2785 -3.4785 5.9755 48 1 5.1651 -3.5203 2.5904 49 1 5.3908 -2.1324 3.6837 50 1 5.3541 -1.4762 1.2515 51 1 4.0673 -0.6971 2.2040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716807392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:31 Heat of formation + Delta-G solvation = -23.604962 kcal Electronic energy + Delta-G solvation = -31354.811874 eV Core-core repulsion = 27254.941507 eV Total energy + Delta-G solvation = -4099.870368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.67022 -40.95468 -39.17351 -37.68842 -36.91435 -34.75050 -34.28301 -33.43233 -32.47319 -31.72908 -31.30168 -28.17659 -28.08408 -26.61451 -25.36217 -23.91731 -23.82065 -22.78619 -20.82770 -20.66515 -20.02016 -19.03807 -18.51725 -18.26239 -17.92701 -17.37506 -17.11188 -16.75682 -16.41249 -16.29322 -15.69056 -15.41988 -15.37763 -15.06667 -14.84809 -14.58095 -14.52448 -14.37524 -14.29496 -14.15458 -14.05704 -13.72878 -13.22935 -13.11120 -13.02840 -12.65677 -12.60513 -12.49039 -12.22913 -12.12161 -12.00665 -11.94073 -11.91216 -11.74658 -11.51384 -11.35246 -11.26252 -11.01920 -10.80938 -10.59606 -10.57795 -10.06541 -9.72979 -8.71404 -7.88258 -5.34273 1.46622 1.48980 1.52232 1.59441 1.61436 1.70980 2.00982 2.36090 2.42165 2.51176 3.27711 3.49942 3.57083 3.60967 3.65658 3.72803 3.82923 3.87809 4.04462 4.10799 4.27036 4.34638 4.38132 4.43443 4.46590 4.53673 4.58825 4.64107 4.70454 4.77574 4.81410 4.83854 4.86076 4.94527 4.99578 5.04818 5.04996 5.14500 5.18889 5.20654 5.29960 5.37805 5.46756 5.58647 5.64067 5.71360 5.77036 6.36203 6.38249 6.45839 6.79567 7.13741 7.18357 7.21823 7.83471 8.36215 9.18773 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.002377 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.177974 B =11774.828350 C =12704.848717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.230 4.230 3 C 0.210 3.790 4 N -0.600 5.600 5 C 0.507 3.493 6 O -0.578 6.578 7 C -0.122 4.122 8 C -0.086 4.086 9 H 0.068 0.932 10 C -0.108 4.108 11 C -0.131 4.131 12 C 0.509 3.491 13 O -0.618 6.618 14 N -0.713 5.713 15 C 0.106 3.894 16 C 0.156 3.844 17 C -0.114 4.114 18 C 0.143 3.857 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.068 0.932 22 C -0.051 4.051 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.288 1.288 28 C 0.180 3.820 29 C -0.127 4.127 30 H 0.238 0.762 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.397 0.603 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.005 0.995 46 H 0.057 0.943 47 H 0.250 0.750 48 H -0.011 1.011 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 13.829 -18.972 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.231 4.231 3 C 0.089 3.911 4 N -0.330 5.330 5 C 0.298 3.702 6 O -0.458 6.458 7 C -0.162 4.162 8 C -0.105 4.105 9 H 0.086 0.914 10 C -0.145 4.145 11 C -0.171 4.171 12 C 0.298 3.702 13 O -0.501 6.501 14 N -0.361 5.361 15 C -0.017 4.017 16 C 0.052 3.948 17 C -0.153 4.153 18 C 0.017 3.983 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.086 0.914 22 C -0.246 4.246 23 N -0.582 5.582 24 Si 0.796 3.204 25 H -0.189 1.189 26 H -0.223 1.223 27 H -0.215 1.215 28 C 0.054 3.946 29 C -0.167 4.167 30 H 0.254 0.746 31 H 0.120 0.880 32 H 0.158 0.842 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.232 0.768 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.023 0.977 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.007 0.993 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.244 13.138 -19.472 24.894 hybrid contribution 0.618 -0.859 1.432 1.780 sum -7.627 12.279 -18.040 23.117 Atomic orbital electron populations 1.25623 0.96772 0.97669 0.99997 1.23763 0.95385 1.02432 1.01508 1.18704 0.83725 0.83052 1.05642 1.48197 1.64698 1.14364 1.05755 1.21513 0.75873 0.88282 0.84538 1.90681 1.47491 1.22648 1.84979 1.21794 1.06409 0.98603 0.89379 1.21176 0.94930 0.99720 0.94667 0.91354 1.21718 1.04981 0.97558 0.90285 1.21659 0.92526 1.01117 1.01784 1.20935 0.88124 0.78632 0.82465 1.90727 1.73115 1.54199 1.32093 1.45574 1.24868 1.57147 1.08522 1.21728 0.96479 1.00969 0.82528 1.20746 0.95234 0.93278 0.85506 1.22076 0.96359 1.00333 0.96579 1.20996 0.91219 0.93884 0.92229 1.44336 1.10346 1.74599 1.03849 1.19529 0.94892 1.41150 0.83413 0.91435 1.25821 0.97251 1.00000 1.01526 1.70202 1.04531 1.45989 1.37524 0.85210 0.77888 0.77467 0.79883 1.18934 1.22262 1.21454 1.20533 0.87874 0.94052 0.92156 1.22292 0.98148 0.99755 0.96520 0.74563 0.87971 0.84153 0.85934 0.84992 0.87501 0.89313 0.86859 0.87605 0.76818 0.89837 0.90734 0.91382 0.91498 0.92045 0.97701 0.92399 0.94086 0.99328 0.92155 0.91532 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 19.25 74.32 1.43 -1.40 16 2 C -0.23 -3.97 11.92 31.13 0.37 -3.60 16 3 C 0.21 3.31 5.15 84.57 0.44 3.74 16 4 N -0.60 -13.53 2.37 -808.17 -1.91 -15.45 16 5 C 0.51 11.00 7.42 87.66 0.65 11.65 16 6 O -0.58 -17.76 13.35 -3.01 -0.04 -17.80 16 7 C -0.12 -1.27 3.73 29.85 0.11 -1.16 16 8 C -0.09 -1.06 1.89 -10.71 -0.02 -1.08 16 9 H 0.07 1.18 7.94 -2.38 -0.02 1.16 16 10 C -0.11 -0.76 5.33 30.71 0.16 -0.59 16 11 C -0.13 -1.61 6.03 29.68 0.18 -1.43 16 12 C 0.51 10.83 7.72 87.71 0.68 11.50 16 13 O -0.62 -18.99 17.78 -3.03 -0.05 -19.04 16 14 N -0.71 -13.27 5.45 -467.33 -2.55 -15.81 16 15 C 0.11 1.66 6.11 86.49 0.53 2.19 16 16 C 0.16 4.95 2.48 45.02 0.11 5.07 16 17 C -0.11 -3.73 4.73 30.67 0.15 -3.58 16 18 C 0.14 5.95 6.52 86.36 0.56 6.51 16 19 N -0.61 -30.01 2.99 -699.09 -2.09 -32.10 16 20 C -0.26 -13.99 9.58 84.03 0.81 -13.18 16 21 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 22 C -0.05 -2.78 4.92 84.86 0.42 -2.37 16 23 N -0.94 -54.95 11.20 21.65 0.24 -54.71 16 24 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 27 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 28 C 0.18 8.52 5.30 86.36 0.46 8.98 16 29 C -0.13 -4.42 5.31 30.67 0.16 -4.26 16 30 H 0.24 2.18 7.80 -4.43 -0.03 2.15 16 31 H 0.10 1.78 6.46 -2.39 -0.02 1.76 16 32 H 0.14 0.99 6.44 -2.38 -0.02 0.98 16 33 H 0.12 0.86 7.95 -2.38 -0.02 0.84 16 34 H 0.13 0.54 7.37 -2.39 -0.02 0.52 16 35 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 0.42 8.13 -2.39 -0.02 0.40 16 37 H 0.11 1.14 8.14 -2.38 -0.02 1.13 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.40 7.47 8.80 -92.71 -0.82 6.65 16 40 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 41 H 0.07 1.60 6.19 -2.39 -0.01 1.59 16 42 H 0.07 2.60 6.90 -2.39 -0.02 2.59 16 43 H 0.07 2.16 7.02 -2.39 -0.02 2.14 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.06 2.34 7.93 -2.38 -0.02 2.32 16 47 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 48 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 49 H 0.06 3.21 6.06 -2.39 -0.01 3.20 16 50 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.07 2.26 6.72 -2.39 -0.02 2.24 16 Total: -1.00 -78.12 400.46 2.93 -75.19 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.12 Total: 16.79 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 7.19 Total: 16.99 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -6.31 Total: -118.08 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.09 Total: -36.84 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -78.12 2.93 -75.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716807392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.584 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds