Wall clock time and date at job start Wed Apr 1 2020 04:37:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46802 * 2 1
4 4 N 1.46502 * 109.46889 * 119.99484 * 2 1 3
5 5 C 1.46500 * 119.99738 * 123.42849 * 4 2 1
6 6 C 1.53008 * 109.46549 * 269.99837 * 5 4 2
7 7 N 1.46500 * 109.46549 * 179.97438 * 6 5 4
8 8 C 1.46499 * 120.00199 * 269.99659 * 7 6 5
9 9 C 1.36935 * 119.99913 * 90.00240 * 7 6 5
10 10 H 1.08005 * 120.00530 * 32.86124 * 9 7 6
11 11 C 1.38810 * 120.00226 * 212.85785 * 9 7 6
12 12 N 1.31619 * 119.99802 * 5.88199 * 11 9 7
13 13 Si 1.86795 * 120.00469 * 185.88037 * 11 9 7
14 14 H 1.48501 * 109.47070 * 0.02562 * 13 11 9
15 15 H 1.48505 * 109.47473 * 120.00173 * 13 11 9
16 16 H 1.48501 * 109.47446 * 240.00255 * 13 11 9
17 17 C 1.34772 * 120.00240 * 303.42161 * 4 2 1
18 18 O 1.21512 * 120.00304 * 210.26502 * 17 4 2
19 19 C 1.48165 * 120.00005 * 30.26696 * 17 4 2
20 20 C 1.39617 * 120.88559 * 317.74156 * 19 17 4
21 21 C 1.38851 * 118.94401 * 179.97438 * 20 19 17
22 22 O 1.35689 * 119.62292 * 180.02562 * 21 20 19
23 23 N 1.32199 * 120.76151 * 0.02562 * 21 20 19
24 24 C 1.31883 * 121.96722 * 0.02562 * 23 21 20
25 25 C 1.50702 * 119.51113 * 179.97438 * 24 23 21
26 26 C 1.52998 * 117.49815 * 163.61925 * 25 24 23
27 27 C 1.52995 * 60.00341 * 252.51030 * 26 25 24
28 28 C 1.38021 * 120.97613 * 359.97438 * 24 23 21
29 29 H 1.08997 * 109.47170 * 253.37759 * 1 2 3
30 30 H 1.09000 * 109.47234 * 13.38756 * 1 2 3
31 31 H 1.09002 * 109.46933 * 133.38230 * 1 2 3
32 32 H 1.08998 * 109.47627 * 239.99775 * 2 1 3
33 33 H 1.09000 * 109.47106 * 220.89958 * 3 2 1
34 34 H 1.08996 * 109.47385 * 340.90031 * 3 2 1
35 35 H 1.08998 * 109.47326 * 100.90324 * 3 2 1
36 36 H 1.08994 * 109.47465 * 29.99350 * 5 4 2
37 37 H 1.08994 * 109.47471 * 150.00151 * 5 4 2
38 38 H 1.08994 * 109.46839 * 299.99896 * 6 5 4
39 39 H 1.08992 * 109.47297 * 60.00439 * 6 5 4
40 40 H 1.08999 * 109.47284 * 94.75161 * 8 7 6
41 41 H 1.09004 * 109.47416 * 214.75647 * 8 7 6
42 42 H 1.09006 * 109.47075 * 334.75515 * 8 7 6
43 43 H 0.96997 * 120.00108 * 179.97438 * 12 11 9
44 44 H 1.07994 * 120.53111 * 0.02562 * 20 19 17
45 45 H 0.96701 * 113.99810 * 270.00494 * 22 21 20
46 46 H 1.08996 * 115.55088 * 309.33040 * 25 24 23
47 47 H 1.09005 * 117.50363 * 0.02562 * 26 25 24
48 48 H 1.09004 * 117.49748 * 145.01754 * 26 25 24
49 49 H 1.08994 * 117.50046 * 252.51242 * 27 26 25
50 50 H 1.09003 * 117.51793 * 107.47885 * 27 26 25
51 51 H 1.08001 * 120.43588 * 180.02562 * 28 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.9214 -1.8363 1.0632
6 6 2.1006 -3.1241 0.9672
7 7 3.0037 -4.2698 0.8335
8 6 3.4179 -4.7249 -0.4959
9 6 3.4605 -4.9155 1.9513
10 1 2.8335 -4.9873 2.8278
11 6 4.7296 -5.4780 1.9581
12 7 5.5372 -5.2920 0.9356
13 14 5.2912 -6.4987 3.4182
14 1 4.2048 -6.5564 4.4290
15 1 5.6178 -7.8744 2.9643
16 1 6.4972 -5.8773 4.0221
17 6 1.6368 -0.2716 2.4191
18 8 2.3805 -0.4138 3.3695
19 6 0.3105 0.3623 2.6047
20 6 -0.1745 1.2924 1.6832
21 6 -1.4231 1.8612 1.8965
22 8 -1.9081 2.7662 1.0094
23 7 -2.1448 1.5312 2.9538
24 6 -1.7186 0.6576 3.8451
25 6 -2.5869 0.3226 5.0304
26 6 -2.2488 -0.9447 5.8180
27 6 -3.4874 -0.9096 4.9206
28 6 -0.4890 0.0457 3.7085
29 1 -0.3633 -0.2940 0.9847
30 1 -0.3634 0.9997 -0.2379
31 1 -0.3633 -0.7059 -0.7469
32 1 1.8934 -0.5138 -0.8899
33 1 2.8934 1.5262 -0.6728
34 1 1.2455 2.1088 -0.3362
35 1 2.3443 1.7204 1.0091
36 1 3.5238 -1.7215 0.1622
37 1 3.5755 -1.8865 1.9337
38 1 1.4982 -3.2389 1.8682
39 1 1.4466 -3.0740 0.0967
40 1 4.3732 -4.2683 -0.7550
41 1 3.5229 -5.8098 -0.4923
42 1 2.6659 -4.4350 -1.2299
43 1 6.4241 -5.6847 0.9404
44 1 0.4117 1.5644 0.8180
45 1 -1.6724 3.6817 1.2130
46 1 -2.9685 1.1765 5.5899
47 1 -1.3980 -1.5360 5.4793
48 1 -2.4077 -0.9246 6.8963
49 1 -4.4611 -0.8663 5.4083
50 1 -3.4520 -1.4776 3.9910
51 1 -0.1487 -0.6687 4.4435
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717948535.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:54
Heat of formation + Delta-G solvation = 98.041940 kcal
Electronic energy + Delta-G solvation = -32025.620532 eV
Core-core repulsion = 27931.025169 eV
Total energy + Delta-G solvation = -4094.595362 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-41.91183 -39.63005 -38.15999 -37.01375 -36.41961 -35.70683 -33.57291 -32.01953
-31.16042 -30.08852 -28.18617 -27.34465 -25.88165 -25.10463 -24.85658 -23.11487
-22.64631 -22.15918 -21.62771 -20.45234 -19.05294 -18.24170 -17.53964 -17.01960
-16.75830 -16.44813 -15.88257 -15.65761 -15.56270 -15.15050 -14.84561 -14.60906
-14.09401 -13.88637 -13.70268 -13.68761 -13.26501 -12.95215 -12.82328 -12.59125
-12.40979 -12.21733 -12.06059 -11.99080 -11.70753 -11.59983 -11.57935 -11.29262
-10.98482 -10.87810 -10.84925 -10.74643 -10.63989 -10.54790 -10.18247 -10.09705
-10.05087 -9.79282 -9.60779 -9.42695 -8.61431 -8.54541 -8.41512 -6.65750
-5.76161 -3.32574 0.63945 0.78642 2.59037 3.00596 3.09286 3.37566
3.45000 3.47521 3.50533 3.66816 4.14513 4.30511 4.49015 4.52452
4.61460 4.65565 4.68658 4.79508 4.82411 4.88487 5.04609 5.19563
5.24979 5.34370 5.39709 5.43010 5.43511 5.49015 5.53612 5.60495
5.63839 5.75161 5.80079 5.84631 5.88108 5.90649 5.93575 6.05374
6.20462 6.20597 6.27816 6.57073 6.69312 6.73654 7.02121 7.21447
7.26622 7.55792 7.67615 7.71905 7.81558 8.15845 8.43862 9.21790
9.80783 10.34406 11.27290
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011396 B = 0.003314 C = 0.002787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2456.315215 B = 8448.149997 C =10044.606467
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.132 3.868
3 C -0.181 4.181
4 N -0.613 5.613
5 C 0.095 3.905
6 C 0.143 3.857
7 N -0.595 5.595
8 C 0.158 3.842
9 C -0.261 4.261
10 H 0.065 0.935
11 C 0.012 3.988
12 N -0.903 5.903
13 Si 0.903 3.097
14 H -0.276 1.276
15 H -0.289 1.289
16 H -0.288 1.288
17 C 0.568 3.432
18 O -0.508 6.508
19 C -0.088 4.088
20 C -0.155 4.155
21 C 0.274 3.726
22 O -0.478 6.478
23 N -0.478 5.478
24 C 0.164 3.836
25 C -0.107 4.107
26 C -0.172 4.172
27 C -0.161 4.161
28 C -0.120 4.120
29 H 0.090 0.910
30 H 0.082 0.918
31 H 0.062 0.938
32 H 0.101 0.899
33 H 0.072 0.928
34 H 0.074 0.926
35 H 0.065 0.935
36 H 0.070 0.930
37 H 0.089 0.911
38 H 0.041 0.959
39 H 0.036 0.964
40 H 0.034 0.966
41 H 0.037 0.963
42 H -0.001 1.001
43 H 0.253 0.747
44 H 0.189 0.811
45 H 0.397 0.603
46 H 0.123 0.877
47 H 0.103 0.897
48 H 0.104 0.896
49 H 0.101 0.899
50 H 0.096 0.904
51 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.886 16.461 0.025 22.194
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.262 4.262
2 C 0.028 3.972
3 C -0.239 4.239
4 N -0.347 5.347
5 C -0.029 4.029
6 C 0.014 3.986
7 N -0.318 5.318
8 C 0.013 3.987
9 C -0.391 4.391
10 H 0.083 0.917
11 C -0.187 4.187
12 N -0.546 5.546
13 Si 0.733 3.267
14 H -0.201 1.201
15 H -0.216 1.216
16 H -0.215 1.215
17 C 0.355 3.645
18 O -0.382 6.382
19 C -0.099 4.099
20 C -0.175 4.175
21 C 0.096 3.904
22 O -0.284 6.284
23 N -0.197 5.197
24 C 0.025 3.975
25 C -0.126 4.126
26 C -0.209 4.209
27 C -0.199 4.199
28 C -0.140 4.140
29 H 0.108 0.892
30 H 0.101 0.899
31 H 0.081 0.919
32 H 0.119 0.881
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.084 0.916
36 H 0.089 0.911
37 H 0.107 0.893
38 H 0.059 0.941
39 H 0.054 0.946
40 H 0.053 0.947
41 H 0.056 0.944
42 H 0.017 0.983
43 H 0.063 0.937
44 H 0.205 0.795
45 H 0.253 0.747
46 H 0.140 0.860
47 H 0.121 0.879
48 H 0.122 0.878
49 H 0.119 0.881
50 H 0.114 0.886
51 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -15.301 16.198 0.246 22.283
hybrid contribution 1.368 -0.432 0.615 1.561
sum -13.932 15.766 0.861 21.057
Atomic orbital electron populations
1.23809 0.95533 1.02770 1.04092 1.21184 0.93826 0.93043 0.89152
1.22682 1.02089 0.95671 1.03409 1.48028 1.49596 1.33005 1.04107
1.22762 0.92936 0.83722 1.03461 1.21201 0.92446 0.86347 0.98573
1.43835 1.55122 1.29570 1.03224 1.20857 0.95722 0.98462 0.83618
1.19180 0.96326 1.29993 0.93575 0.91740 1.25285 0.95496 1.00567
0.97373 1.69996 1.07734 1.46672 1.30205 0.86207 0.78601 0.79532
0.82388 1.20122 1.21565 1.21451 1.18003 0.85009 0.78042 0.83486
1.90803 1.52717 1.53480 1.41156 1.20433 0.96153 0.98010 0.95330
1.23822 0.97154 0.96651 0.99867 1.18758 0.88641 0.94255 0.88744
1.84816 1.78079 1.19341 1.46207 1.66581 1.35880 1.15103 1.02107
1.19842 0.91876 0.92497 0.93253 1.20725 1.02064 0.93542 0.96279
1.23152 1.00000 0.99205 0.98564 1.22983 0.95328 0.99478 1.02078
1.22016 0.94249 1.00606 0.97150 0.89244 0.89938 0.91917 0.88116
0.90914 0.90791 0.91574 0.91119 0.89307 0.94085 0.94567 0.94745
0.94418 0.98279 0.93677 0.79474 0.74668 0.85958 0.87914 0.87779
0.88074 0.88581 0.83480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -2.18 7.71 37.16 0.29 -1.89 16
2 C 0.13 1.51 3.27 -67.93 -0.22 1.29 16
3 C -0.18 -1.66 8.31 37.16 0.31 -1.35 16
4 N -0.61 -9.47 2.40 -167.09 -0.40 -9.87 16
5 C 0.09 1.81 5.88 -4.04 -0.02 1.79 16
6 C 0.14 2.96 6.03 -4.04 -0.02 2.94 16
7 N -0.59 -14.91 2.89 -181.12 -0.52 -15.43 16
8 C 0.16 3.79 9.06 59.85 0.54 4.34 16
9 C -0.26 -7.24 9.57 -15.06 -0.14 -7.39 16
10 H 0.06 1.80 7.84 -52.48 -0.41 1.39 16
11 C 0.01 0.34 5.25 -17.43 -0.09 0.25 16
12 N -0.90 -26.08 10.97 55.49 0.61 -25.47 16
13 Si 0.90 22.05 29.56 -169.99 -5.02 17.03 16
14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16
15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
17 C 0.57 9.44 6.00 -12.19 -0.07 9.36 16
18 O -0.51 -10.43 16.77 5.35 0.09 -10.34 16
19 C -0.09 -1.21 4.18 -104.68 -0.44 -1.64 16
20 C -0.15 -1.73 4.82 -38.84 -0.19 -1.92 16
21 C 0.27 3.12 7.57 -17.17 -0.13 2.99 16
22 O -0.48 -4.35 13.46 -18.77 -0.25 -4.60 16
23 N -0.48 -6.12 10.27 -9.59 -0.10 -6.22 16
24 C 0.16 2.01 6.45 -82.65 -0.53 1.48 16
25 C -0.11 -1.07 6.21 -91.77 -0.57 -1.64 16
26 C -0.17 -1.52 9.79 -26.73 -0.26 -1.78 16
27 C -0.16 -1.44 10.23 -26.73 -0.27 -1.71 16
28 C -0.12 -1.58 9.03 -39.03 -0.35 -1.94 16
29 H 0.09 1.13 3.90 -61.53 -0.24 0.89 16
30 H 0.08 0.74 5.13 -51.93 -0.27 0.47 16
31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.10 1.10 7.82 -51.93 -0.41 0.69 16
33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
34 H 0.07 0.49 6.28 -51.93 -0.33 0.17 16
35 H 0.07 0.71 6.79 -51.93 -0.35 0.36 16
36 H 0.07 1.32 7.95 -51.93 -0.41 0.91 16
37 H 0.09 2.04 7.34 -51.93 -0.38 1.66 16
38 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16
39 H 0.04 0.67 7.86 -51.93 -0.41 0.27 16
40 H 0.03 0.89 7.20 -51.93 -0.37 0.51 16
41 H 0.04 0.96 7.78 -51.93 -0.40 0.56 16
42 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16
43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
44 H 0.19 1.77 1.26 -52.54 -0.07 1.70 16
45 H 0.40 1.64 9.06 45.56 0.41 2.06 16
46 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16
47 H 0.10 0.99 6.38 -51.93 -0.33 0.66 16
48 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16
49 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
50 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
51 H 0.15 1.93 6.24 -52.49 -0.33 1.60 16
LS Contribution 398.87 15.07 6.01 6.01
Total: -1.00 -33.78 398.87 -8.57 -42.35
By element:
Atomic # 1 Polarization: 10.15 SS G_CDS: -6.79 Total: 3.36 kcal
Atomic # 6 Polarization: 5.37 SS G_CDS: -2.19 Total: 3.18 kcal
Atomic # 7 Polarization: -56.57 SS G_CDS: -0.41 Total: -56.99 kcal
Atomic # 8 Polarization: -14.78 SS G_CDS: -0.16 Total: -14.94 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -33.78 -8.57 -42.35 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717948535.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.387 kcal
(2) G-P(sol) polarization free energy of solvation -33.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds