Wall clock time and date at job start Wed Apr 1 2020 04:37:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46802 * 2 1
4 4 N 1.46502 * 109.46889 * 119.99484 * 2 1 3
5 5 C 1.46500 * 119.99738 * 123.42849 * 4 2 1
6 6 C 1.53008 * 109.46549 * 269.99837 * 5 4 2
7 7 N 1.46500 * 109.46549 * 179.97438 * 6 5 4
8 8 C 1.46499 * 120.00199 * 269.99659 * 7 6 5
9 9 C 1.36935 * 119.99913 * 90.00240 * 7 6 5
10 10 H 1.08005 * 120.00530 * 32.86124 * 9 7 6
11 11 C 1.38810 * 120.00226 * 212.85785 * 9 7 6
12 12 N 1.31619 * 119.99802 * 5.88199 * 11 9 7
13 13 Si 1.86795 * 120.00469 * 185.88037 * 11 9 7
14 14 H 1.48501 * 109.47070 * 0.02562 * 13 11 9
15 15 H 1.48505 * 109.47473 * 120.00173 * 13 11 9
16 16 H 1.48501 * 109.47446 * 240.00255 * 13 11 9
17 17 C 1.34772 * 120.00240 * 303.42161 * 4 2 1
18 18 O 1.21512 * 120.00304 * 210.26502 * 17 4 2
19 19 C 1.48165 * 120.00005 * 30.26696 * 17 4 2
20 20 C 1.39617 * 120.88559 * 317.74156 * 19 17 4
21 21 C 1.38851 * 118.94401 * 179.97438 * 20 19 17
22 22 O 1.35689 * 119.62292 * 180.02562 * 21 20 19
23 23 N 1.32199 * 120.76151 * 0.02562 * 21 20 19
24 24 C 1.31883 * 121.96722 * 0.02562 * 23 21 20
25 25 C 1.50702 * 119.51113 * 179.97438 * 24 23 21
26 26 C 1.52998 * 117.49815 * 163.61925 * 25 24 23
27 27 C 1.52995 * 60.00341 * 252.51030 * 26 25 24
28 28 C 1.38021 * 120.97613 * 359.97438 * 24 23 21
29 29 H 1.08997 * 109.47170 * 253.37759 * 1 2 3
30 30 H 1.09000 * 109.47234 * 13.38756 * 1 2 3
31 31 H 1.09002 * 109.46933 * 133.38230 * 1 2 3
32 32 H 1.08998 * 109.47627 * 239.99775 * 2 1 3
33 33 H 1.09000 * 109.47106 * 220.89958 * 3 2 1
34 34 H 1.08996 * 109.47385 * 340.90031 * 3 2 1
35 35 H 1.08998 * 109.47326 * 100.90324 * 3 2 1
36 36 H 1.08994 * 109.47465 * 29.99350 * 5 4 2
37 37 H 1.08994 * 109.47471 * 150.00151 * 5 4 2
38 38 H 1.08994 * 109.46839 * 299.99896 * 6 5 4
39 39 H 1.08992 * 109.47297 * 60.00439 * 6 5 4
40 40 H 1.08999 * 109.47284 * 94.75161 * 8 7 6
41 41 H 1.09004 * 109.47416 * 214.75647 * 8 7 6
42 42 H 1.09006 * 109.47075 * 334.75515 * 8 7 6
43 43 H 0.96997 * 120.00108 * 179.97438 * 12 11 9
44 44 H 1.07994 * 120.53111 * 0.02562 * 20 19 17
45 45 H 0.96701 * 113.99810 * 270.00494 * 22 21 20
46 46 H 1.08996 * 115.55088 * 309.33040 * 25 24 23
47 47 H 1.09005 * 117.50363 * 0.02562 * 26 25 24
48 48 H 1.09004 * 117.49748 * 145.01754 * 26 25 24
49 49 H 1.08994 * 117.50046 * 252.51242 * 27 26 25
50 50 H 1.09003 * 117.51793 * 107.47885 * 27 26 25
51 51 H 1.08001 * 120.43588 * 180.02562 * 28 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.9214 -1.8363 1.0632
6 6 2.1006 -3.1241 0.9672
7 7 3.0037 -4.2698 0.8335
8 6 3.4179 -4.7249 -0.4959
9 6 3.4605 -4.9155 1.9513
10 1 2.8335 -4.9873 2.8278
11 6 4.7296 -5.4780 1.9581
12 7 5.5372 -5.2920 0.9356
13 14 5.2912 -6.4987 3.4182
14 1 4.2048 -6.5564 4.4290
15 1 5.6178 -7.8744 2.9643
16 1 6.4972 -5.8773 4.0221
17 6 1.6368 -0.2716 2.4191
18 8 2.3805 -0.4138 3.3695
19 6 0.3105 0.3623 2.6047
20 6 -0.1745 1.2924 1.6832
21 6 -1.4231 1.8612 1.8965
22 8 -1.9081 2.7662 1.0094
23 7 -2.1448 1.5312 2.9538
24 6 -1.7186 0.6576 3.8451
25 6 -2.5869 0.3226 5.0304
26 6 -2.2488 -0.9447 5.8180
27 6 -3.4874 -0.9096 4.9206
28 6 -0.4890 0.0457 3.7085
29 1 -0.3633 -0.2940 0.9847
30 1 -0.3634 0.9997 -0.2379
31 1 -0.3633 -0.7059 -0.7469
32 1 1.8934 -0.5138 -0.8899
33 1 2.8934 1.5262 -0.6728
34 1 1.2455 2.1088 -0.3362
35 1 2.3443 1.7204 1.0091
36 1 3.5238 -1.7215 0.1622
37 1 3.5755 -1.8865 1.9337
38 1 1.4982 -3.2389 1.8682
39 1 1.4466 -3.0740 0.0967
40 1 4.3732 -4.2683 -0.7550
41 1 3.5229 -5.8098 -0.4923
42 1 2.6659 -4.4350 -1.2299
43 1 6.4241 -5.6847 0.9404
44 1 0.4117 1.5644 0.8180
45 1 -1.6724 3.6817 1.2130
46 1 -2.9685 1.1765 5.5899
47 1 -1.3980 -1.5360 5.4793
48 1 -2.4077 -0.9246 6.8963
49 1 -4.4611 -0.8663 5.4083
50 1 -3.4520 -1.4776 3.9910
51 1 -0.1487 -0.6687 4.4435
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717948535.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:53
Heat of formation + Delta-G solvation = 74.339312 kcal
Electronic energy + Delta-G solvation = -32026.648355 eV
Core-core repulsion = 27931.025169 eV
Total energy + Delta-G solvation = -4095.623186 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-42.93212 -40.74745 -38.98098 -38.20597 -37.70976 -37.03879 -34.92771 -33.37818
-32.80435 -31.02267 -29.79824 -28.15608 -27.91721 -26.40220 -25.82345 -24.56975
-23.60405 -23.01033 -22.64603 -22.13357 -20.02815 -19.22144 -18.84885 -18.47421
-18.05771 -17.40813 -17.05658 -16.88373 -16.72331 -16.52360 -16.07993 -15.61632
-15.58472 -15.18043 -15.08469 -14.80663 -14.69551 -14.36924 -14.09253 -13.92567
-13.50283 -13.33584 -13.12266 -13.03442 -12.86465 -12.83599 -12.81680 -12.70501
-12.43479 -12.35483 -12.22904 -12.13926 -12.04339 -11.84929 -11.61384 -11.54154
-11.36850 -11.29909 -10.71530 -10.63235 -10.43312 -9.79764 -9.41885 -8.69098
-7.88837 -5.48200 -0.38707 -0.11382 1.32114 1.41583 1.43498 1.53235
1.79846 2.24572 2.46314 2.59800 2.88398 3.19403 3.25900 3.36343
3.64355 3.74471 3.76333 3.78953 3.90785 3.96094 4.00228 4.04645
4.12818 4.18707 4.31670 4.44741 4.48803 4.52057 4.58464 4.59755
4.66997 4.73270 4.77260 4.81165 4.84588 4.85840 4.94644 5.01422
5.09437 5.14804 5.15977 5.21218 5.25591 5.27709 5.34593 5.56021
5.62242 5.69427 6.28488 6.34096 6.58860 6.84416 6.85620 7.12450
7.78633 8.25287 9.12013
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011396 B = 0.003314 C = 0.002787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2456.315215 B = 8448.149997 C =10044.606467
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.124 3.876
3 C -0.180 4.180
4 N -0.609 5.609
5 C 0.115 3.885
6 C 0.149 3.851
7 N -0.612 5.612
8 C 0.171 3.829
9 C -0.274 4.274
10 H 0.055 0.945
11 C -0.036 4.036
12 N -0.927 5.927
13 Si 0.962 3.038
14 H -0.271 1.271
15 H -0.283 1.283
16 H -0.290 1.290
17 C 0.568 3.432
18 O -0.560 6.560
19 C -0.100 4.100
20 C -0.140 4.140
21 C 0.283 3.717
22 O -0.477 6.477
23 N -0.492 5.492
24 C 0.162 3.838
25 C -0.117 4.117
26 C -0.171 4.171
27 C -0.156 4.156
28 C -0.134 4.134
29 H 0.069 0.931
30 H 0.106 0.894
31 H 0.071 0.929
32 H 0.112 0.888
33 H 0.083 0.917
34 H 0.109 0.891
35 H 0.048 0.952
36 H 0.077 0.923
37 H 0.042 0.958
38 H 0.025 0.975
39 H 0.066 0.934
40 H 0.013 0.987
41 H 0.012 0.988
42 H 0.038 0.962
43 H 0.251 0.749
44 H 0.208 0.792
45 H 0.421 0.579
46 H 0.136 0.864
47 H 0.087 0.913
48 H 0.123 0.877
49 H 0.122 0.878
50 H 0.084 0.916
51 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.972 18.206 -1.096 24.914
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.258 4.258
2 C 0.022 3.978
3 C -0.237 4.237
4 N -0.343 5.343
5 C -0.010 4.010
6 C 0.022 3.978
7 N -0.335 5.335
8 C 0.026 3.974
9 C -0.404 4.404
10 H 0.073 0.927
11 C -0.232 4.232
12 N -0.571 5.571
13 Si 0.790 3.210
14 H -0.196 1.196
15 H -0.209 1.209
16 H -0.217 1.217
17 C 0.356 3.644
18 O -0.438 6.438
19 C -0.111 4.111
20 C -0.160 4.160
21 C 0.104 3.896
22 O -0.287 6.287
23 N -0.211 5.211
24 C 0.024 3.976
25 C -0.136 4.136
26 C -0.208 4.208
27 C -0.193 4.193
28 C -0.155 4.155
29 H 0.087 0.913
30 H 0.124 0.876
31 H 0.089 0.911
32 H 0.130 0.870
33 H 0.102 0.898
34 H 0.127 0.873
35 H 0.067 0.933
36 H 0.096 0.904
37 H 0.060 0.940
38 H 0.043 0.957
39 H 0.084 0.916
40 H 0.031 0.969
41 H 0.031 0.969
42 H 0.057 0.943
43 H 0.060 0.940
44 H 0.224 0.776
45 H 0.282 0.718
46 H 0.153 0.847
47 H 0.106 0.894
48 H 0.142 0.858
49 H 0.141 0.859
50 H 0.102 0.898
51 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -17.429 17.991 -0.904 25.065
hybrid contribution 1.924 -0.882 0.890 2.296
sum -15.505 17.110 -0.015 23.090
Atomic orbital electron populations
1.23747 0.94470 1.04376 1.03183 1.21562 0.94653 0.94164 0.87472
1.22680 1.03723 0.94442 1.02820 1.47990 1.48784 1.32045 1.05441
1.22149 0.92538 0.84812 1.01520 1.21200 0.91868 0.85689 0.99077
1.44020 1.55448 1.31118 1.02932 1.20661 0.96005 0.96670 0.84063
1.19353 0.96498 1.30396 0.94164 0.92732 1.25941 0.95622 1.01927
0.99750 1.70128 1.07803 1.47633 1.31574 0.85297 0.77916 0.78172
0.79659 1.19565 1.20946 1.21666 1.18477 0.85631 0.77292 0.82963
1.90769 1.54368 1.55916 1.42774 1.20175 0.94763 0.99373 0.96784
1.23916 0.97226 0.95309 0.99507 1.18859 0.88201 0.94209 0.88324
1.84771 1.77868 1.20695 1.45374 1.66685 1.36306 1.15377 1.02709
1.20079 0.91598 0.92017 0.93859 1.20840 1.02424 0.94381 0.95942
1.23196 0.99582 0.98380 0.99633 1.23048 0.96214 0.98334 1.01698
1.22030 0.95062 1.01230 0.97185 0.91265 0.87573 0.91068 0.86988
0.89849 0.87333 0.93307 0.90419 0.93966 0.95662 0.91569 0.96852
0.96897 0.94328 0.93950 0.77583 0.71825 0.84664 0.89416 0.85849
0.85947 0.89770 0.84504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.66 7.71 71.98 0.55 -3.11 16
2 C 0.12 2.54 3.27 44.99 0.15 2.69 16
3 C -0.18 -2.77 8.31 71.98 0.60 -2.17 16
4 N -0.61 -18.81 2.40 -800.86 -1.92 -20.74 16
5 C 0.11 4.49 5.88 86.38 0.51 5.00 16
6 C 0.15 6.21 6.03 86.38 0.52 6.74 16
7 N -0.61 -31.09 2.89 -726.93 -2.10 -33.19 16
8 C 0.17 8.19 9.06 127.77 1.16 9.35 16
9 C -0.27 -15.60 9.57 84.03 0.80 -14.79 16
10 H 0.05 3.15 7.84 -2.91 -0.02 3.13 16
11 C -0.04 -2.03 5.25 84.86 0.45 -1.59 16
12 N -0.93 -54.70 10.97 21.65 0.24 -54.47 16
13 Si 0.96 46.25 29.56 68.60 2.03 48.28 16
14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16
15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
16 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16
17 C 0.57 19.48 6.00 86.88 0.52 20.00 16
18 O -0.56 -24.56 16.77 -3.75 -0.06 -24.63 16
19 C -0.10 -2.74 4.18 -19.90 -0.08 -2.82 16
20 C -0.14 -2.84 4.82 22.75 0.11 -2.73 16
21 C 0.28 5.71 7.57 84.78 0.64 6.35 16
22 O -0.48 -6.82 13.46 -90.08 -1.21 -8.04 16
23 N -0.49 -11.74 10.27 -297.15 -3.05 -14.79 16
24 C 0.16 3.90 6.45 42.50 0.27 4.18 16
25 C -0.12 -2.23 6.21 -11.54 -0.07 -2.30 16
26 C -0.17 -2.94 9.79 30.59 0.30 -2.65 16
27 C -0.16 -2.61 10.23 30.59 0.31 -2.29 16
28 C -0.13 -3.65 9.03 22.63 0.20 -3.45 16
29 H 0.07 1.62 3.90 -11.41 -0.04 1.58 16
30 H 0.11 1.43 5.13 -2.39 -0.01 1.42 16
31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
32 H 0.11 2.09 7.82 -2.39 -0.02 2.07 16
33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.11 0.93 6.28 -2.39 -0.02 0.91 16
35 H 0.05 0.96 6.79 -2.39 -0.02 0.95 16
36 H 0.08 2.91 7.95 -2.39 -0.02 2.89 16
37 H 0.04 2.05 7.34 -2.39 -0.02 2.04 16
38 H 0.02 1.12 8.04 -2.39 -0.02 1.10 16
39 H 0.07 2.36 7.86 -2.39 -0.02 2.34 16
40 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16
41 H 0.01 0.64 7.78 -2.38 -0.02 0.63 16
42 H 0.04 1.52 7.84 -2.38 -0.02 1.50 16
43 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16
44 H 0.21 3.23 1.26 -2.96 0.00 3.22 16
45 H 0.42 1.72 9.06 -74.06 -0.67 1.05 16
46 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16
47 H 0.09 1.78 6.38 -2.38 -0.02 1.77 16
48 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16
49 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16
50 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
51 H 0.14 3.89 6.24 -2.91 -0.02 3.87 16
Total: -1.00 -76.17 398.87 1.13 -75.05
By element:
Atomic # 1 Polarization: 15.85 SS G_CDS: 0.27 Total: 16.11 kcal
Atomic # 6 Polarization: 9.46 SS G_CDS: 6.95 Total: 16.41 kcal
Atomic # 7 Polarization: -116.35 SS G_CDS: -6.84 Total: -123.19 kcal
Atomic # 8 Polarization: -31.39 SS G_CDS: -1.28 Total: -32.66 kcal
Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal
Total: -76.17 1.13 -75.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717948535.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.388 kcal
(2) G-P(sol) polarization free energy of solvation -76.174 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.048 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds