Wall clock time and date at job start Wed Apr 1 2020 04:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 N 1.46897 * 109.47506 * 174.88591 * 3 2 1 5 5 C 1.46901 * 110.99810 * 76.02272 * 4 3 2 6 6 C 1.53002 * 109.47014 * 199.54784 * 5 4 3 7 7 N 1.46494 * 109.47456 * 174.88811 * 6 5 4 8 8 C 1.34771 * 120.00226 * 180.02562 * 7 6 5 9 9 O 1.21557 * 120.00419 * 359.97438 * 8 7 6 10 10 C 1.47849 * 120.00227 * 179.97438 * 8 7 6 11 11 C 1.39580 * 120.14767 * 179.97438 * 10 8 7 12 12 C 1.37956 * 119.85134 * 179.72595 * 11 10 8 13 13 C 1.38361 * 120.14706 * 0.26916 * 12 11 10 14 14 C 1.50697 * 119.84912 * 179.97438 * 13 12 11 15 15 C 1.38357 * 120.29355 * 0.02562 * 13 12 11 16 16 C 1.37956 * 120.14163 * 359.97142 * 15 13 12 17 17 C 1.46899 * 111.00198 * 199.97249 * 4 3 2 18 18 C 1.50701 * 109.46778 * 66.04661 * 17 4 3 19 19 O 1.21288 * 120.00012 * 359.97438 * 18 17 4 20 20 N 1.34774 * 119.99999 * 179.97438 * 18 17 4 21 21 C 1.37098 * 120.00273 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99501 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00277 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99702 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47310 * 59.99751 * 25 23 21 27 27 H 1.48497 * 109.46946 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47002 * 300.00109 * 25 23 21 29 29 H 1.09006 * 109.46811 * 60.00947 * 1 2 3 30 30 H 1.09003 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47456 * 300.00683 * 1 2 3 32 32 H 1.08993 * 109.47456 * 239.99317 * 2 1 3 33 33 H 1.09005 * 109.46903 * 119.99596 * 2 1 3 34 34 H 1.09004 * 109.47556 * 54.88070 * 3 2 1 35 35 H 1.09009 * 109.46754 * 294.88694 * 3 2 1 36 36 H 1.08996 * 109.47408 * 79.54739 * 5 4 3 37 37 H 1.09001 * 109.46928 * 319.54185 * 5 4 3 38 38 H 1.09001 * 109.47268 * 54.88513 * 6 5 4 39 39 H 1.09001 * 109.47117 * 294.88668 * 6 5 4 40 40 H 0.97004 * 119.99782 * 359.97438 * 7 6 5 41 41 H 1.07998 * 120.06927 * 359.97438 * 11 10 8 42 42 H 1.08004 * 119.92205 * 180.29699 * 12 11 10 43 43 H 1.09003 * 109.46656 * 90.00826 * 14 13 12 44 44 H 1.09002 * 109.46642 * 209.99906 * 14 13 12 45 45 H 1.08992 * 109.47904 * 330.00408 * 14 13 12 46 46 H 1.07995 * 119.92762 * 179.97438 * 15 13 12 47 47 H 1.08001 * 120.07176 * 180.02562 * 16 15 13 48 48 H 1.08998 * 109.47433 * 186.04483 * 17 4 3 49 49 H 1.08995 * 109.47528 * 306.04936 * 17 4 3 50 50 H 0.97003 * 119.99831 * 359.97438 * 20 18 17 51 51 H 0.96998 * 119.99741 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5038 1.4443 0.1235 5 6 4.1398 1.0744 -1.1480 6 6 5.5752 0.6145 -0.8854 7 7 6.1692 0.1307 -2.1341 8 6 7.4364 -0.3281 -2.1441 9 8 8.0867 -0.3401 -1.1172 10 6 8.0357 -0.8169 -3.4042 11 6 9.3480 -1.2922 -3.4182 12 6 9.8993 -1.7521 -4.5962 13 6 9.1562 -1.7377 -5.7633 14 6 9.7652 -2.2412 -7.0465 15 6 7.8569 -1.2622 -5.7576 16 6 7.2937 -0.7995 -4.5863 17 6 3.9906 2.7473 0.5960 18 6 3.5116 2.9813 2.0055 19 8 2.8313 2.1452 2.5615 20 7 3.8393 4.1197 2.6483 21 6 3.4031 4.3329 3.9304 22 1 2.7973 3.5885 4.4255 23 6 3.7413 5.5064 4.5933 24 7 4.4789 6.4120 3.9910 25 14 3.1477 5.7965 6.3405 26 1 3.6672 4.7225 7.2247 27 1 3.6413 7.1128 6.8188 28 1 1.6630 5.7846 6.3672 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6038 1.9822 0.8406 35 1 1.7533 1.9292 -0.9323 36 1 4.1508 1.9375 -1.8135 37 1 3.5781 0.2641 -1.6130 38 1 5.5703 -0.1899 -0.1498 39 1 6.1609 1.4513 -0.5048 40 1 5.6502 0.1399 -2.9535 41 1 9.9291 -1.3036 -2.5080 42 1 10.9130 -2.1246 -4.6074 43 1 9.5675 -3.3083 -7.1483 44 1 9.3267 -1.7084 -7.8903 45 1 10.8416 -2.0711 -7.0292 46 1 7.2824 -1.2533 -6.6720 47 1 6.2793 -0.4289 -4.5831 48 1 5.0804 2.7570 0.5762 49 1 3.6085 3.5351 -0.0531 50 1 4.3837 4.7882 2.2037 51 1 4.7154 7.2310 4.4539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731870721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:55 Heat of formation + Delta-G solvation = -52.161840 kcal Electronic energy + Delta-G solvation = -29430.549492 eV Core-core repulsion = 25329.440805 eV Total energy + Delta-G solvation = -4101.108687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.44945 -39.01505 -38.57343 -36.94813 -34.98186 -33.83087 -33.38351 -32.87638 -31.37524 -31.18121 -29.50413 -27.79184 -27.26646 -24.94855 -24.05308 -23.05715 -22.61999 -21.78492 -20.82147 -20.30537 -19.15207 -18.22417 -17.82875 -16.59978 -16.12114 -15.73381 -15.64499 -15.43179 -15.13686 -14.92905 -14.82017 -14.49361 -14.30997 -14.21082 -13.95774 -13.76070 -13.67312 -13.43984 -13.37788 -13.02116 -12.68876 -12.45843 -12.27396 -12.07842 -12.00004 -11.73035 -11.58946 -11.50546 -11.43488 -11.39768 -11.11809 -10.92602 -10.60088 -10.41946 -10.29136 -10.18431 -10.09092 -9.42888 -9.38744 -9.26525 -9.00000 -8.41234 -7.96952 -7.89480 -6.38587 -3.79264 0.50244 0.98759 2.63918 2.90173 3.22352 3.27961 3.32386 3.55057 3.92587 4.02761 4.25455 4.31606 4.36006 4.50374 4.64321 4.79883 4.87185 4.95755 4.99745 5.08411 5.12379 5.22914 5.23828 5.27243 5.31918 5.36901 5.43473 5.56642 5.61448 5.62423 5.67771 5.70035 5.87532 5.90261 5.92378 5.98301 6.01925 6.05038 6.09153 6.12671 6.26100 6.29022 6.31900 6.50600 6.53729 6.57999 7.26762 7.28757 7.38248 7.57964 8.06126 8.09066 8.64789 9.21055 9.57578 10.09283 10.79111 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.001923 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.867154 B =14554.830612 C =16216.438531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.058 3.942 4 N -0.512 5.512 5 C 0.044 3.956 6 C 0.121 3.879 7 N -0.724 5.724 8 C 0.556 3.444 9 O -0.532 6.532 10 C -0.138 4.138 11 C -0.055 4.055 12 C -0.129 4.129 13 C -0.064 4.064 14 C -0.119 4.119 15 C -0.129 4.129 16 C -0.083 4.083 17 C 0.042 3.958 18 C 0.443 3.557 19 O -0.575 6.575 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.022 0.978 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.397 0.603 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -13.941 -24.432 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.070 4.070 4 N -0.236 5.236 5 C -0.085 4.085 6 C -0.003 4.003 7 N -0.377 5.377 8 C 0.343 3.657 9 O -0.409 6.409 10 C -0.141 4.141 11 C -0.074 4.074 12 C -0.147 4.147 13 C -0.064 4.064 14 C -0.176 4.176 15 C -0.147 4.147 16 C -0.101 4.101 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.146 0.854 47 H 0.144 0.856 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.642 -14.648 -22.850 27.723 hybrid contribution -0.364 1.365 -0.425 1.475 sum 5.278 -13.283 -23.276 27.314 Atomic orbital electron populations 1.21717 0.96103 1.01165 1.01717 1.21427 0.94905 0.96716 1.01982 1.22250 0.86362 0.97587 1.00767 1.61405 1.06562 1.29439 1.26174 1.22261 0.94383 1.00130 0.91707 1.21391 0.92896 1.00510 0.85474 1.45841 1.14061 1.65140 1.12627 1.18250 0.81476 0.77618 0.88380 1.90814 1.61258 1.54942 1.33880 1.19980 0.95944 1.04763 0.93379 1.21313 0.93586 0.93836 0.98692 1.21062 1.00401 1.01290 0.91977 1.20169 0.94106 0.96472 0.95671 1.20869 1.01086 1.01481 0.94128 1.20980 0.95112 1.00455 0.98199 1.21297 0.99308 0.97532 0.91993 1.21949 1.00905 0.89821 0.96233 1.19690 0.85916 0.83848 0.87670 1.90508 1.42154 1.45072 1.68168 1.41862 1.47044 1.16892 1.14297 1.19641 1.30186 1.03466 0.89503 0.87962 1.25257 0.96930 0.95554 1.00210 1.69608 1.37243 1.09113 1.38376 0.85922 0.79008 0.77410 0.81894 1.19897 1.21021 1.19962 0.93395 0.93022 0.92296 0.93246 0.90683 0.88353 0.95955 0.94302 0.90227 0.89971 0.91051 0.76833 0.84496 0.85311 0.90743 0.91238 0.91203 0.85421 0.85603 0.89271 0.93408 0.77531 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.11 -1.54 5.98 -26.73 -0.16 -1.70 16 3 C 0.06 0.90 4.46 -3.83 -0.02 0.88 16 4 N -0.51 -8.20 4.10 -236.07 -0.97 -9.17 16 5 C 0.04 0.52 4.92 -3.82 -0.02 0.51 16 6 C 0.12 1.55 5.70 -4.04 -0.02 1.53 16 7 N -0.72 -7.68 5.51 -61.25 -0.34 -8.02 16 8 C 0.56 7.15 7.77 -12.33 -0.10 7.05 16 9 O -0.53 -9.08 16.35 5.32 0.09 -9.00 16 10 C -0.14 -1.41 5.87 -104.96 -0.62 -2.03 16 11 C -0.06 -0.54 9.60 -39.18 -0.38 -0.92 16 12 C -0.13 -0.98 9.68 -39.64 -0.38 -1.37 16 13 C -0.06 -0.43 5.89 -104.53 -0.62 -1.04 16 14 C -0.12 -0.50 10.01 36.00 0.36 -0.14 16 15 C -0.13 -0.85 9.68 -39.64 -0.38 -1.24 16 16 C -0.08 -0.62 9.54 -39.18 -0.37 -1.00 16 17 C 0.04 0.75 5.27 -4.98 -0.03 0.72 16 18 C 0.44 10.42 7.29 -10.99 -0.08 10.34 16 19 O -0.58 -15.28 14.12 5.55 0.08 -15.20 16 20 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 25 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.90 5.85 -51.93 -0.30 1.59 16 35 H 0.02 0.31 8.00 -51.92 -0.42 -0.11 16 36 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 37 H 0.08 0.82 6.58 -51.93 -0.34 0.48 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.03 6.95 -51.93 -0.36 0.67 16 40 H 0.40 2.89 6.51 -40.82 -0.27 2.63 16 41 H 0.14 1.40 7.65 -52.49 -0.40 1.00 16 42 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 45 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 46 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.13 0.64 6.41 -52.49 -0.34 0.30 16 48 H 0.09 1.49 6.71 -51.93 -0.35 1.14 16 49 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 51 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 418.23 15.07 6.30 6.30 Total: -1.00 -33.86 418.23 -9.90 -43.76 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.02 Total: 11.34 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.68 Total: 2.18 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.64 Total: -55.66 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.86 -9.90 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731870721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.400 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds