Wall clock time and date at job start Wed Apr 1 2020 05:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46990 * 2 1 4 4 N 1.46498 * 109.46873 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99631 * 269.99463 * 4 3 2 6 6 H 1.08004 * 119.99816 * 144.94141 * 5 4 3 7 7 C 1.38806 * 119.99997 * 324.94171 * 5 4 3 8 8 N 1.31625 * 119.99828 * 155.97998 * 7 5 4 9 9 Si 1.86798 * 120.00411 * 335.98447 * 7 5 4 10 10 H 1.48499 * 109.47346 * 92.73553 * 9 7 5 11 11 H 1.48501 * 109.47339 * 212.74196 * 9 7 5 12 12 H 1.48506 * 109.46755 * 332.74059 * 9 7 5 13 13 C 1.46500 * 120.00489 * 89.99855 * 4 3 2 14 14 C 1.53006 * 109.46891 * 265.23931 * 13 4 3 15 15 N 1.46502 * 109.46827 * 179.15911 * 14 13 4 16 16 C 1.34775 * 119.99816 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00101 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.46502 * 109.46913 * 180.02562 * 18 16 15 20 20 C 1.34776 * 119.99886 * 271.50834 * 19 18 16 21 21 C 1.50703 * 120.00303 * 4.75295 * 20 19 18 22 22 O 1.21286 * 120.00367 * 184.75279 * 20 19 18 23 23 C 1.39921 * 120.00302 * 91.50926 * 19 18 16 24 24 C 1.38865 * 120.07378 * 173.26220 * 23 19 18 25 25 C 1.38112 * 119.92784 * 179.97438 * 24 23 19 26 26 C 1.38279 * 120.07382 * 359.97438 * 25 24 23 27 27 C 1.38283 * 120.13903 * 0.04338 * 26 25 24 28 28 C 1.38104 * 120.07267 * 359.95687 * 27 26 25 29 29 H 1.08993 * 109.47508 * 300.00600 * 1 2 3 30 30 H 1.09006 * 109.47263 * 60.00515 * 1 2 3 31 31 H 1.09003 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47508 * 239.99400 * 2 1 3 33 33 H 1.09001 * 109.46585 * 119.99691 * 2 1 3 34 34 H 1.08993 * 109.47484 * 59.99386 * 3 2 1 35 35 H 1.08997 * 109.46494 * 299.99237 * 3 2 1 36 36 H 0.97003 * 119.99563 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.47382 * 145.24088 * 13 4 3 38 38 H 1.09000 * 109.47048 * 25.23414 * 13 4 3 39 39 H 1.08999 * 109.46987 * 59.15611 * 14 13 4 40 40 H 1.08996 * 109.46845 * 299.15884 * 14 13 4 41 41 H 0.96996 * 120.00058 * 359.97438 * 15 14 13 42 42 H 1.09001 * 109.46778 * 60.00100 * 18 16 15 43 43 H 1.08996 * 109.47359 * 300.00433 * 18 16 15 44 44 H 1.09005 * 109.46937 * 5.76668 * 21 20 19 45 45 H 1.09003 * 109.47021 * 125.76082 * 21 20 19 46 46 H 1.08993 * 109.47080 * 245.76611 * 21 20 19 47 47 H 1.07999 * 120.03902 * 359.70521 * 24 23 19 48 48 H 1.08003 * 119.96246 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.92971 * 180.02562 * 26 25 24 50 50 H 1.08003 * 119.96028 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.03994 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4428 1.1869 6 1 5.1221 0.9055 1.2723 7 6 3.6834 2.1336 2.2795 8 7 4.0324 1.7824 3.4991 9 14 2.5076 3.5615 2.0193 10 1 1.1085 3.0667 2.0726 11 1 2.7154 4.5745 3.0850 12 1 2.7641 4.1785 0.6930 13 6 4.2381 1.4423 -1.2677 14 6 4.5969 0.0046 -1.6491 15 7 5.3125 0.0027 -2.9274 16 6 5.7309 -1.1609 -3.4637 17 8 5.5154 -2.2062 -2.8877 18 6 6.4665 -1.1630 -4.7790 19 7 6.8102 -2.5395 -5.1441 20 6 7.9694 -3.0800 -4.7191 21 6 8.8616 -2.3082 -3.7812 22 8 8.2947 -4.1875 -5.0913 23 6 5.9351 -3.2931 -5.9340 24 6 6.3186 -4.5447 -6.3975 25 6 5.4522 -5.2862 -7.1765 26 6 4.2038 -4.7839 -7.4947 27 6 3.8190 -3.5378 -7.0350 28 6 4.6807 -2.7913 -6.2556 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 3.6793 2.2654 4.2626 37 1 5.1509 2.0281 -1.1599 38 1 3.6151 1.8803 -2.0476 39 1 3.6849 -0.5850 -1.7422 40 1 5.2322 -0.4284 -0.8764 41 1 5.4852 0.8387 -3.3879 42 1 7.3783 -0.5728 -4.6862 43 1 5.8308 -0.7304 -5.5515 44 1 8.3616 -1.3878 -3.4792 45 1 9.0720 -2.9135 -2.8995 46 1 9.7962 -2.0650 -4.2866 47 1 7.2950 -4.9360 -6.1527 48 1 5.7501 -6.2595 -7.5377 49 1 3.5280 -5.3660 -8.1037 50 1 2.8434 -3.1481 -7.2856 51 1 4.3797 -1.8179 -5.8972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731873751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:23 Heat of formation + Delta-G solvation = 3.944671 kcal Electronic energy + Delta-G solvation = -30786.308042 eV Core-core repulsion = 26687.632316 eV Total energy + Delta-G solvation = -4098.675726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.33554 -39.41337 -38.49403 -36.93583 -35.81865 -34.62198 -32.63124 -31.75799 -31.46727 -30.98351 -29.59913 -28.64720 -27.37004 -25.66911 -23.76354 -23.15433 -22.33757 -21.19174 -20.95637 -20.54743 -19.77471 -17.92353 -17.56805 -17.48917 -16.82166 -16.27201 -15.77421 -15.58013 -15.40887 -15.24195 -14.67385 -14.46330 -14.26077 -13.93521 -13.86430 -13.77643 -13.48337 -13.33257 -13.11749 -13.06735 -12.85607 -12.67668 -12.39624 -12.36660 -12.18917 -11.90385 -11.71192 -11.45479 -11.31138 -11.24562 -10.91024 -10.86907 -10.77974 -10.38965 -10.23400 -9.85474 -9.77818 -9.50667 -9.48788 -9.01997 -8.88784 -8.57366 -8.10889 -7.01262 -6.07754 -3.48457 1.15591 1.33950 2.18381 2.44666 2.50665 3.19313 3.24982 3.40581 3.44162 3.76565 4.11699 4.41998 4.44550 4.57347 4.59361 4.84103 4.85487 4.88544 4.92927 5.09980 5.12653 5.27609 5.29164 5.33903 5.47058 5.54979 5.55970 5.57320 5.67637 5.76894 5.94456 5.96458 6.02572 6.06188 6.09925 6.28642 6.34966 6.38384 6.42168 6.45988 6.47925 6.49297 6.52262 6.73070 6.88000 6.94075 7.03364 7.05932 7.48744 7.76683 7.94272 8.17053 8.28144 8.87632 9.61960 9.98819 11.07456 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002453 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.199437 B =11410.707001 C =12595.207833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.133 3.867 4 N -0.599 5.599 5 C -0.274 4.274 6 H 0.080 0.920 7 C 0.039 3.961 8 N -0.894 5.894 9 Si 0.879 3.121 10 H -0.284 1.284 11 H -0.302 1.302 12 H -0.271 1.271 13 C 0.142 3.858 14 C 0.095 3.905 15 N -0.721 5.721 16 C 0.484 3.516 17 O -0.521 6.521 18 C 0.076 3.924 19 N -0.534 5.534 20 C 0.525 3.475 21 C -0.175 4.175 22 O -0.518 6.518 23 C 0.159 3.841 24 C -0.168 4.168 25 C -0.099 4.099 26 C -0.149 4.149 27 C -0.096 4.096 28 C -0.157 4.157 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.398 0.602 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.181 0.819 48 H 0.123 0.877 49 H 0.119 0.881 50 H 0.123 0.877 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -4.187 -22.240 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.008 3.992 4 N -0.321 5.321 5 C -0.402 4.402 6 H 0.097 0.903 7 C -0.163 4.163 8 N -0.535 5.535 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.230 1.230 12 H -0.196 1.196 13 C 0.014 3.986 14 C -0.030 4.030 15 N -0.373 5.373 16 C 0.266 3.734 17 O -0.396 6.396 18 C -0.051 4.051 19 N -0.255 5.255 20 C 0.317 3.683 21 C -0.234 4.234 22 O -0.395 6.395 23 C 0.066 3.934 24 C -0.187 4.187 25 C -0.118 4.118 26 C -0.168 4.168 27 C -0.115 4.115 28 C -0.177 4.177 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.231 0.769 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.197 0.803 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.141 0.859 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.615 -5.431 -21.721 22.680 hybrid contribution -0.931 1.331 -0.030 1.625 sum 2.684 -4.099 -21.751 22.296 Atomic orbital electron populations 1.21745 0.97306 1.00691 1.00985 1.22096 0.93890 1.00027 1.02060 1.21331 0.84016 0.94539 0.99316 1.44018 1.00358 1.86038 1.01689 1.18719 1.07724 1.27339 0.86460 0.90267 1.25379 0.97959 0.97853 0.95063 1.69901 1.46099 1.39807 0.97669 0.86975 0.80504 0.84131 0.77462 1.21202 1.23032 1.19596 1.20955 0.96731 0.92243 0.88668 1.22433 0.96197 1.01597 0.82753 1.46057 1.58428 1.08230 1.24627 1.20901 0.80594 0.84681 0.87192 1.90794 1.55457 1.31312 1.62004 1.21772 1.02858 0.83683 0.96749 1.45104 1.18870 1.13189 1.48340 1.20989 0.80714 0.86393 0.80247 1.22008 0.99774 1.01618 1.00038 1.90354 1.72484 1.20147 1.56559 1.17975 0.90003 0.92301 0.93169 1.22702 1.04202 0.93240 0.98515 1.21166 0.93731 0.99507 0.97408 1.21130 0.97071 0.96440 1.02129 1.20876 0.98910 0.94577 0.97147 1.20778 0.92984 1.01306 1.02669 0.93122 0.93573 0.93458 0.93015 0.91293 0.92526 0.94431 0.92595 0.92346 0.93823 0.91829 0.91099 0.76896 0.86084 0.86370 0.90212 0.87733 0.88073 0.80266 0.85939 0.86321 0.85882 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.14 -2.65 6.26 -26.73 -0.17 -2.81 16 3 C 0.13 2.73 4.57 -4.04 -0.02 2.71 16 4 N -0.60 -13.07 2.13 -173.24 -0.37 -13.44 16 5 C -0.27 -7.22 9.93 -15.06 -0.15 -7.37 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 7 C 0.04 1.07 5.29 -17.43 -0.09 0.97 16 8 N -0.89 -26.48 13.97 55.49 0.78 -25.70 16 9 Si 0.88 21.31 25.16 -169.99 -4.28 17.03 16 10 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.14 2.38 5.83 -4.04 -0.02 2.36 16 14 C 0.10 1.52 5.98 -4.04 -0.02 1.50 16 15 N -0.72 -8.14 5.56 -60.29 -0.33 -8.48 16 16 C 0.48 5.94 7.38 -10.98 -0.08 5.86 16 17 O -0.52 -9.20 16.42 5.56 0.09 -9.11 16 18 C 0.08 0.62 4.83 -5.19 -0.03 0.60 16 19 N -0.53 -6.12 2.19 -114.73 -0.25 -6.37 16 20 C 0.52 6.36 7.70 -10.98 -0.08 6.27 16 21 C -0.18 -1.48 9.88 36.01 0.36 -1.13 16 22 O -0.52 -7.66 13.50 5.55 0.07 -7.59 16 23 C 0.16 2.04 6.49 -83.69 -0.54 1.50 16 24 C -0.17 -2.21 9.05 -39.40 -0.36 -2.57 16 25 C -0.10 -1.12 10.04 -39.61 -0.40 -1.51 16 26 C -0.15 -1.53 10.04 -39.55 -0.40 -1.92 16 27 C -0.10 -1.01 10.04 -39.61 -0.40 -1.40 16 28 C -0.16 -1.79 9.16 -39.39 -0.36 -2.15 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.93 6.58 -51.93 -0.34 0.58 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.29 2.98 -51.93 -0.15 1.14 16 35 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.04 0.63 7.84 -51.93 -0.41 0.23 16 39 H 0.06 1.12 6.58 -51.93 -0.34 0.78 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.40 2.97 8.47 -40.82 -0.35 2.62 16 42 H 0.12 0.56 6.38 -51.93 -0.33 0.23 16 43 H 0.12 0.67 6.42 -51.93 -0.33 0.34 16 44 H 0.08 0.58 5.35 -51.93 -0.28 0.30 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.18 2.58 4.54 -56.20 -0.25 2.33 16 48 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 51 H 0.12 1.17 6.29 -52.48 -0.33 0.84 16 LS Contribution 406.94 15.07 6.13 6.13 Total: -1.00 -35.23 406.94 -8.32 -43.54 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.77 Total: 5.07 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.39 Total: -1.09 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.18 Total: -53.99 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.17 Total: -16.70 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.28 Total: 17.03 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.23 -8.32 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731873751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.489 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds