Wall clock time and date at job start Wed Apr 1 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46990 * 2 1 4 4 N 1.46498 * 109.46873 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99631 * 269.99463 * 4 3 2 6 6 H 1.08004 * 119.99816 * 144.94141 * 5 4 3 7 7 C 1.38806 * 119.99997 * 324.94171 * 5 4 3 8 8 N 1.31625 * 119.99828 * 155.97998 * 7 5 4 9 9 Si 1.86798 * 120.00411 * 335.98447 * 7 5 4 10 10 H 1.48499 * 109.47346 * 92.73553 * 9 7 5 11 11 H 1.48501 * 109.47339 * 212.74196 * 9 7 5 12 12 H 1.48506 * 109.46755 * 332.74059 * 9 7 5 13 13 C 1.46500 * 120.00489 * 89.99855 * 4 3 2 14 14 C 1.53006 * 109.46891 * 265.23931 * 13 4 3 15 15 N 1.46502 * 109.46827 * 179.15911 * 14 13 4 16 16 C 1.34775 * 119.99816 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00101 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.46502 * 109.46913 * 180.02562 * 18 16 15 20 20 C 1.34776 * 119.99886 * 271.50834 * 19 18 16 21 21 C 1.50703 * 120.00303 * 4.75295 * 20 19 18 22 22 O 1.21286 * 120.00367 * 184.75279 * 20 19 18 23 23 C 1.39921 * 120.00302 * 91.50926 * 19 18 16 24 24 C 1.38865 * 120.07378 * 173.26220 * 23 19 18 25 25 C 1.38112 * 119.92784 * 179.97438 * 24 23 19 26 26 C 1.38279 * 120.07382 * 359.97438 * 25 24 23 27 27 C 1.38283 * 120.13903 * 0.04338 * 26 25 24 28 28 C 1.38104 * 120.07267 * 359.95687 * 27 26 25 29 29 H 1.08993 * 109.47508 * 300.00600 * 1 2 3 30 30 H 1.09006 * 109.47263 * 60.00515 * 1 2 3 31 31 H 1.09003 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47508 * 239.99400 * 2 1 3 33 33 H 1.09001 * 109.46585 * 119.99691 * 2 1 3 34 34 H 1.08993 * 109.47484 * 59.99386 * 3 2 1 35 35 H 1.08997 * 109.46494 * 299.99237 * 3 2 1 36 36 H 0.97003 * 119.99563 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.47382 * 145.24088 * 13 4 3 38 38 H 1.09000 * 109.47048 * 25.23414 * 13 4 3 39 39 H 1.08999 * 109.46987 * 59.15611 * 14 13 4 40 40 H 1.08996 * 109.46845 * 299.15884 * 14 13 4 41 41 H 0.96996 * 120.00058 * 359.97438 * 15 14 13 42 42 H 1.09001 * 109.46778 * 60.00100 * 18 16 15 43 43 H 1.08996 * 109.47359 * 300.00433 * 18 16 15 44 44 H 1.09005 * 109.46937 * 5.76668 * 21 20 19 45 45 H 1.09003 * 109.47021 * 125.76082 * 21 20 19 46 46 H 1.08993 * 109.47080 * 245.76611 * 21 20 19 47 47 H 1.07999 * 120.03902 * 359.70521 * 24 23 19 48 48 H 1.08003 * 119.96246 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.92971 * 180.02562 * 26 25 24 50 50 H 1.08003 * 119.96028 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.03994 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4428 1.1869 6 1 5.1221 0.9055 1.2723 7 6 3.6834 2.1336 2.2795 8 7 4.0324 1.7824 3.4991 9 14 2.5076 3.5615 2.0193 10 1 1.1085 3.0667 2.0726 11 1 2.7154 4.5745 3.0850 12 1 2.7641 4.1785 0.6930 13 6 4.2381 1.4423 -1.2677 14 6 4.5969 0.0046 -1.6491 15 7 5.3125 0.0027 -2.9274 16 6 5.7309 -1.1609 -3.4637 17 8 5.5154 -2.2062 -2.8877 18 6 6.4665 -1.1630 -4.7790 19 7 6.8102 -2.5395 -5.1441 20 6 7.9694 -3.0800 -4.7191 21 6 8.8616 -2.3082 -3.7812 22 8 8.2947 -4.1875 -5.0913 23 6 5.9351 -3.2931 -5.9340 24 6 6.3186 -4.5447 -6.3975 25 6 5.4522 -5.2862 -7.1765 26 6 4.2038 -4.7839 -7.4947 27 6 3.8190 -3.5378 -7.0350 28 6 4.6807 -2.7913 -6.2556 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 3.6793 2.2654 4.2626 37 1 5.1509 2.0281 -1.1599 38 1 3.6151 1.8803 -2.0476 39 1 3.6849 -0.5850 -1.7422 40 1 5.2322 -0.4284 -0.8764 41 1 5.4852 0.8387 -3.3879 42 1 7.3783 -0.5728 -4.6862 43 1 5.8308 -0.7304 -5.5515 44 1 8.3616 -1.3878 -3.4792 45 1 9.0720 -2.9135 -2.8995 46 1 9.7962 -2.0650 -4.2866 47 1 7.2950 -4.9360 -6.1527 48 1 5.7501 -6.2595 -7.5377 49 1 3.5280 -5.3660 -8.1037 50 1 2.8434 -3.1481 -7.2856 51 1 4.3797 -1.8179 -5.8972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731873751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:21 Heat of formation + Delta-G solvation = -19.821884 kcal Electronic energy + Delta-G solvation = -30787.338637 eV Core-core repulsion = 26687.632316 eV Total energy + Delta-G solvation = -4099.706321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.20782 -40.47672 -39.34729 -38.51312 -36.75723 -35.86397 -34.34131 -33.37008 -32.37066 -31.81468 -30.72968 -29.57798 -28.38416 -27.37150 -25.24414 -24.03251 -23.20619 -22.56375 -22.38048 -21.82292 -20.68549 -18.85891 -18.74789 -18.40163 -18.34093 -17.45401 -17.14270 -16.62561 -16.51779 -16.31612 -15.89425 -15.70535 -15.41557 -15.17129 -15.01847 -14.77657 -14.65494 -14.45758 -14.37258 -14.27933 -14.06026 -13.96698 -13.57493 -13.22393 -13.14909 -13.07615 -12.96763 -12.83628 -12.63332 -12.49826 -12.29974 -12.10147 -11.96026 -11.85393 -11.79343 -11.65672 -11.20226 -10.90590 -10.55417 -10.41403 -10.06672 -9.87046 -8.98239 -8.83666 -8.18887 -5.55600 0.30686 0.48400 1.30056 1.33728 1.43937 1.54654 1.54991 1.66278 2.21659 2.44288 2.91532 3.04203 3.35728 3.43452 3.77390 3.85017 3.92666 4.10984 4.11921 4.14192 4.21512 4.24062 4.28772 4.37581 4.40817 4.50521 4.51244 4.54962 4.56632 4.61743 4.65730 4.74372 4.84424 4.89279 5.03223 5.09206 5.14469 5.16322 5.22858 5.25406 5.36991 5.47002 5.48216 5.52684 5.56032 5.65360 5.94499 6.10479 6.18030 6.18520 6.57755 6.88739 6.98597 7.26486 7.64544 8.02832 9.00914 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002453 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.199437 B =11410.707001 C =12595.207833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.126 3.874 4 N -0.613 5.613 5 C -0.257 4.257 6 H 0.038 0.962 7 C -0.023 4.023 8 N -0.950 5.950 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.314 1.314 12 H -0.250 1.250 13 C 0.142 3.858 14 C 0.115 3.885 15 N -0.702 5.702 16 C 0.486 3.514 17 O -0.580 6.580 18 C 0.080 3.920 19 N -0.536 5.536 20 C 0.511 3.489 21 C -0.170 4.170 22 O -0.556 6.556 23 C 0.137 3.863 24 C -0.197 4.197 25 C -0.108 4.108 26 C -0.152 4.152 27 C -0.100 4.100 28 C -0.165 4.165 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.027 0.973 41 H 0.422 0.578 42 H 0.165 0.835 43 H 0.153 0.847 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.162 0.838 48 H 0.137 0.863 49 H 0.145 0.855 50 H 0.150 0.850 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -1.884 -25.778 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.002 3.998 4 N -0.335 5.335 5 C -0.386 4.386 6 H 0.056 0.944 7 C -0.219 4.219 8 N -0.594 5.594 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.243 1.243 12 H -0.173 1.173 13 C 0.016 3.984 14 C -0.012 4.012 15 N -0.356 5.356 16 C 0.271 3.729 17 O -0.459 6.459 18 C -0.045 4.045 19 N -0.256 5.256 20 C 0.304 3.696 21 C -0.229 4.229 22 O -0.436 6.436 23 C 0.043 3.957 24 C -0.216 4.216 25 C -0.127 4.127 26 C -0.170 4.170 27 C -0.118 4.118 28 C -0.185 4.185 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.260 0.740 42 H 0.182 0.818 43 H 0.171 0.829 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.148 0.852 47 H 0.179 0.821 48 H 0.155 0.845 49 H 0.162 0.838 50 H 0.168 0.832 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.837 -3.073 -25.343 25.595 hybrid contribution -0.345 0.472 1.000 1.159 sum 1.492 -2.601 -24.343 24.527 Atomic orbital electron populations 1.21702 0.94580 1.01941 1.01929 1.21983 0.96274 0.98769 1.00413 1.21467 0.83025 0.95428 0.99891 1.44136 1.01260 1.86193 1.01892 1.18568 1.06273 1.25368 0.88438 0.94406 1.26037 1.00746 1.00509 0.94606 1.70050 1.49144 1.41489 0.98702 0.85870 0.78735 0.80160 0.77712 1.20183 1.24323 1.17321 1.21120 0.97266 0.92594 0.87396 1.21853 0.94993 1.00491 0.83818 1.45746 1.57483 1.09477 1.22933 1.21642 0.79613 0.83625 0.88027 1.90788 1.57716 1.33500 1.63903 1.22085 1.04926 0.82769 0.94768 1.45253 1.18382 1.14255 1.47754 1.21709 0.81278 0.86309 0.80258 1.22055 1.00464 1.01360 0.99005 1.90349 1.73507 1.21833 1.57880 1.18245 0.91038 0.92581 0.93788 1.22703 1.04260 0.94425 1.00245 1.21416 0.94131 1.00070 0.97081 1.21472 0.96852 0.96772 1.01927 1.21287 0.99802 0.94448 0.96268 1.21049 0.92465 1.02243 1.02756 0.93875 0.90847 0.92184 0.92173 0.95477 0.94806 0.90611 0.92938 0.91886 0.89654 0.93444 0.95477 0.74020 0.81799 0.82907 0.88738 0.88809 0.85248 0.82121 0.84542 0.83753 0.83231 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.91 71.98 0.71 -3.43 16 2 C -0.13 -4.89 6.26 30.60 0.19 -4.70 16 3 C 0.13 4.87 4.57 86.38 0.39 5.27 16 4 N -0.61 -26.00 2.13 -702.01 -1.49 -27.49 16 5 C -0.26 -13.84 9.93 84.03 0.83 -13.01 16 6 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 7 C -0.02 -1.28 5.29 84.86 0.45 -0.83 16 8 N -0.95 -58.66 13.97 21.65 0.30 -58.35 16 9 Si 0.95 44.03 25.16 68.60 1.73 45.76 16 10 H -0.27 -12.22 6.52 99.48 0.65 -11.57 16 11 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 13 C 0.14 4.42 5.83 86.38 0.50 4.92 16 14 C 0.12 3.57 5.98 86.38 0.52 4.08 16 15 N -0.70 -13.94 5.56 -463.05 -2.57 -16.51 16 16 C 0.49 10.97 7.38 87.66 0.65 11.62 16 17 O -0.58 -20.57 16.42 -3.03 -0.05 -20.62 16 18 C 0.08 1.04 4.83 85.63 0.41 1.46 16 19 N -0.54 -11.69 2.19 -635.30 -1.39 -13.09 16 20 C 0.51 12.38 7.70 87.66 0.68 13.06 16 21 C -0.17 -2.69 9.88 71.24 0.70 -1.99 16 22 O -0.56 -17.30 13.50 -3.05 -0.04 -17.34 16 23 C 0.14 3.45 6.49 38.15 0.25 3.70 16 24 C -0.20 -5.37 9.05 22.39 0.20 -5.16 16 25 C -0.11 -2.41 10.04 22.25 0.22 -2.19 16 26 C -0.15 -2.83 10.04 22.29 0.22 -2.61 16 27 C -0.10 -1.83 10.04 22.25 0.22 -1.60 16 28 C -0.16 -3.41 9.16 22.39 0.21 -3.21 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 2.06 6.58 -2.39 -0.02 2.04 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.03 1.48 2.98 -2.39 -0.01 1.47 16 35 H 0.08 2.36 7.86 -2.39 -0.02 2.35 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 38 H 0.09 2.01 7.84 -2.39 -0.02 2.00 16 39 H 0.05 1.64 6.58 -2.39 -0.02 1.62 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.42 4.38 8.47 -92.71 -0.79 3.60 16 42 H 0.16 0.75 6.38 -2.39 -0.02 0.74 16 43 H 0.15 1.00 6.42 -2.39 -0.02 0.99 16 44 H 0.09 1.16 5.35 -2.38 -0.01 1.15 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.16 4.99 4.54 -61.78 -0.28 4.71 16 48 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 49 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 50 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 51 H 0.14 2.22 6.29 -2.91 -0.02 2.20 16 Total: -1.00 -84.35 406.94 3.69 -80.66 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.16 Total: 21.60 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 7.37 Total: 5.38 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -5.16 Total: -115.44 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.09 Total: -37.95 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.73 Total: 45.76 kcal Total: -84.35 3.69 -80.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731873751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.838 kcal (2) G-P(sol) polarization free energy of solvation -84.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds