Wall clock time and date at job start Wed Apr 1 2020 04:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21273 * 120.00136 * 2 1 4 4 N 1.34774 * 119.99972 * 180.02562 * 2 1 3 5 5 C 1.39441 * 120.00132 * 184.60879 * 4 2 1 6 6 C 1.39140 * 119.92481 * 32.30119 * 5 4 2 7 7 C 1.37669 * 120.07325 * 180.27546 * 6 5 4 8 8 C 1.39746 * 119.92624 * 359.51485 * 7 6 5 9 9 C 1.47597 * 120.07186 * 180.23091 * 8 7 6 10 10 O 1.21588 * 119.99443 * 180.25463 * 9 8 7 11 11 N 1.34769 * 120.00161 * 0.25215 * 9 8 7 12 12 C 1.46507 * 119.99968 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46963 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47019 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47177 * 179.97438 * 14 13 12 16 16 C 1.36942 * 120.00363 * 89.99707 * 15 14 13 17 17 H 1.07996 * 120.00075 * 219.58228 * 16 15 14 18 18 C 1.38810 * 119.99843 * 39.57958 * 16 15 14 19 19 N 1.31627 * 119.99924 * 19.06407 * 18 16 15 20 20 Si 1.86797 * 119.99940 * 199.07014 * 18 16 15 21 21 H 1.48496 * 109.47511 * 59.99997 * 20 18 16 22 22 H 1.48500 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46921 * 299.99750 * 20 18 16 24 24 C 1.46507 * 119.99995 * 269.99745 * 15 14 13 25 25 C 1.53003 * 109.47076 * 116.65902 * 24 15 14 26 26 C 1.52992 * 109.47307 * 236.66284 * 24 15 14 27 27 C 1.39748 * 119.85152 * 0.48290 * 8 7 6 28 28 C 1.37669 * 119.92906 * 359.75144 * 27 8 7 29 29 H 1.09005 * 109.47292 * 239.99744 * 1 2 3 30 30 H 1.08996 * 109.47484 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46874 * 120.00420 * 1 2 3 32 32 H 0.97003 * 120.00038 * 4.60966 * 4 2 1 33 33 H 1.08003 * 119.96033 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.03405 * 179.72436 * 7 6 5 35 35 H 0.97005 * 119.99919 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46570 * 299.99987 * 12 11 9 37 37 H 1.08997 * 109.46868 * 60.00198 * 12 11 9 38 38 H 1.09001 * 109.46850 * 299.99609 * 13 12 11 39 39 H 1.09001 * 109.47443 * 59.99486 * 13 12 11 40 40 H 1.09001 * 109.46965 * 299.99508 * 14 13 12 41 41 H 1.09001 * 109.47458 * 59.99464 * 14 13 12 42 42 H 0.97002 * 119.99616 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46728 * 356.66286 * 24 15 14 44 44 H 1.08994 * 109.47021 * 65.37349 * 25 24 15 45 45 H 1.08997 * 109.47046 * 185.37462 * 25 24 15 46 46 H 1.08997 * 109.47207 * 305.37214 * 25 24 15 47 47 H 1.09000 * 109.47482 * 63.77534 * 26 24 15 48 48 H 1.09000 * 109.47510 * 183.77783 * 26 24 15 49 49 H 1.09008 * 109.46925 * 303.77829 * 26 24 15 50 50 H 1.08005 * 120.03944 * 179.72193 * 27 8 7 51 51 H 1.08001 * 119.96486 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5719 -1.1692 0.0965 6 6 4.2181 -0.1780 0.8285 7 6 5.5916 -0.1738 0.9216 8 6 6.3364 -1.1724 0.2884 9 6 7.8088 -1.1739 0.3903 10 8 8.4557 -2.0408 -0.1650 11 7 8.4362 -0.2145 1.0990 12 6 9.8978 -0.2157 1.1997 13 6 10.3511 0.9700 2.0538 14 6 11.8775 0.9691 2.1585 15 7 12.3116 2.1048 2.9758 16 6 12.4473 1.9610 4.3309 17 1 12.1381 2.7570 4.9920 18 6 12.9824 0.7922 4.8546 19 7 13.6937 -0.0073 4.0881 20 14 12.6928 0.3537 6.6472 21 1 11.2346 0.2235 6.8957 22 1 13.3651 -0.9338 6.9566 23 1 13.2492 1.4230 7.5144 24 6 12.6005 3.3944 2.3434 25 6 11.6198 4.4479 2.8623 26 6 14.0310 3.8190 2.6813 27 6 5.6842 -2.1665 -0.4460 28 6 4.3106 -2.1621 -0.5392 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6982 -2.0059 -0.0684 33 1 3.6416 0.5913 1.3208 34 1 6.0928 0.5985 1.4863 35 1 7.9200 0.4769 1.5423 36 1 10.2292 -1.1448 1.6634 37 1 10.3307 -0.1324 0.2028 38 1 10.0196 1.8993 1.5904 39 1 9.9181 0.8864 3.0506 40 1 12.2094 0.0398 2.6216 41 1 12.3101 1.0529 1.1615 42 1 14.0673 -0.8243 4.4541 43 1 12.4950 3.3007 1.2626 44 1 11.7905 4.6104 3.9264 45 1 11.7719 5.3828 2.3230 46 1 10.5982 4.1010 2.7070 47 1 14.7331 3.1032 2.2536 48 1 14.2237 4.8087 2.2672 49 1 14.1554 3.8475 3.7639 50 1 6.2570 -2.9372 -0.9404 51 1 3.8060 -2.9304 -1.1062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732015061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:04 Heat of formation + Delta-G solvation = -35.440583 kcal Electronic energy + Delta-G solvation = -29587.627575 eV Core-core repulsion = 25487.243976 eV Total energy + Delta-G solvation = -4100.383599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.02121 -39.81114 -38.17220 -36.73007 -35.20017 -34.98678 -32.50171 -31.85027 -31.33739 -30.97783 -29.35830 -28.46638 -26.14746 -25.43892 -23.98810 -23.22231 -22.79067 -21.00769 -20.85897 -20.22855 -19.48063 -18.38493 -17.64760 -17.36634 -16.39298 -16.09547 -15.56379 -15.36638 -15.03300 -14.88978 -14.57763 -14.56026 -14.10817 -14.02993 -13.78478 -13.57432 -13.46286 -13.22293 -13.04846 -12.79939 -12.71150 -12.60277 -12.37985 -11.68573 -11.61857 -11.45724 -11.36101 -11.26179 -10.92823 -10.80991 -10.73039 -10.59722 -10.42123 -10.36651 -10.18133 -9.93228 -9.77235 -9.53984 -9.46604 -9.27926 -8.85779 -8.45043 -8.43714 -6.47893 -5.73390 -3.34868 0.55521 1.12587 2.01381 2.53096 2.89373 3.34160 3.38945 3.44540 3.45763 3.74337 4.13921 4.49892 4.50825 4.65906 4.67303 4.75833 4.77498 5.02360 5.08907 5.16282 5.27404 5.29733 5.40033 5.67667 5.71091 5.81945 5.88993 5.90624 5.99011 6.08384 6.08998 6.14760 6.22526 6.35764 6.44682 6.45907 6.48987 6.61176 6.73114 6.77131 6.79133 6.82868 6.83202 6.85607 7.16113 7.25760 7.38894 7.56082 7.68356 7.72213 7.87967 8.35414 8.59509 9.25278 9.86816 10.47148 11.26062 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.001962 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.408106 B =14269.102380 C =14583.770274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.519 6.519 4 N -0.675 5.675 5 C 0.165 3.835 6 C -0.131 4.131 7 C -0.064 4.064 8 C -0.146 4.146 9 C 0.553 3.447 10 O -0.543 6.543 11 N -0.720 5.720 12 C 0.121 3.879 13 C -0.146 4.146 14 C 0.153 3.847 15 N -0.579 5.579 16 C -0.253 4.253 17 H 0.058 0.942 18 C 0.013 3.987 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.162 3.838 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.040 4.040 28 C -0.156 4.156 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.413 0.587 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.024 0.976 42 H 0.254 0.746 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.028 0.972 49 H 0.058 0.942 50 H 0.141 0.859 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.658 -2.905 -9.084 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.394 6.394 4 N -0.320 5.320 5 C 0.070 3.930 6 C -0.151 4.151 7 C -0.084 4.084 8 C -0.150 4.150 9 C 0.340 3.660 10 O -0.422 6.422 11 N -0.371 5.371 12 C -0.003 4.003 13 C -0.187 4.187 14 C 0.025 3.975 15 N -0.299 5.299 16 C -0.383 4.383 17 H 0.075 0.925 18 C -0.187 4.187 19 N -0.529 5.529 20 Si 0.724 3.276 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.055 3.945 25 C -0.213 4.213 26 C -0.205 4.205 27 C -0.059 4.059 28 C -0.177 4.177 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.249 0.751 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.047 0.953 49 H 0.077 0.923 50 H 0.159 0.841 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.682 -2.874 -9.422 26.575 hybrid contribution -0.700 -0.396 1.187 1.434 sum -25.382 -3.270 -8.236 26.884 Atomic orbital electron populations 1.21940 0.90430 1.06225 1.04675 1.21081 0.91039 0.83076 0.75112 1.90776 1.70542 1.31181 1.46890 1.43571 1.05236 1.10166 1.73016 1.17924 0.82702 0.96683 0.95728 1.21079 0.94467 0.99837 0.99734 1.21245 0.93547 0.96761 0.96817 1.20060 0.93399 0.98277 1.03219 1.18188 0.87041 0.81757 0.78983 1.90771 1.67364 1.37271 1.46786 1.46120 1.08996 1.29508 1.52437 1.21511 0.77526 1.00596 1.00621 1.22514 1.02422 0.94947 0.98791 1.20784 0.87975 0.95291 0.93404 1.43816 1.76011 1.06118 1.03931 1.18838 1.35199 1.02114 0.82135 0.92482 1.25241 0.96356 0.99905 0.97202 1.69962 1.33413 1.13900 1.35624 0.86521 0.77984 0.77521 0.85604 1.20982 1.21697 1.20834 1.20415 0.92302 0.87219 0.94560 1.22191 0.99887 0.97960 1.01213 1.22043 0.98346 0.97819 1.02244 1.21066 0.93256 0.96730 0.94879 1.20825 0.93898 1.00710 1.02231 0.88863 0.88397 0.88998 0.75082 0.84172 0.85054 0.76719 0.91347 0.91853 0.93236 0.91655 0.88748 0.95721 0.93557 0.93748 0.93017 0.94676 0.93718 0.93494 0.95278 0.92260 0.84128 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.46 10.32 36.00 0.37 -0.09 16 2 C 0.51 3.67 7.69 -10.99 -0.08 3.58 16 3 O -0.52 -6.20 14.65 5.56 0.08 -6.12 16 4 N -0.67 -4.04 5.32 -9.86 -0.05 -4.10 16 5 C 0.16 1.50 6.30 -83.73 -0.53 0.98 16 6 C -0.13 -1.41 8.63 -39.45 -0.34 -1.75 16 7 C -0.06 -0.72 9.53 -39.23 -0.37 -1.09 16 8 C -0.15 -1.86 5.88 -104.95 -0.62 -2.47 16 9 C 0.55 8.68 7.76 -12.45 -0.10 8.58 16 10 O -0.54 -10.35 16.34 5.29 0.09 -10.27 16 11 N -0.72 -10.66 5.51 -61.33 -0.34 -11.00 16 12 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 13 C -0.15 -2.70 5.65 -26.73 -0.15 -2.85 16 14 C 0.15 3.42 5.27 -4.04 -0.02 3.40 16 15 N -0.58 -13.71 2.35 -165.66 -0.39 -14.10 16 16 C -0.25 -6.60 8.03 -15.06 -0.12 -6.72 16 17 H 0.06 1.51 7.13 -52.49 -0.37 1.13 16 18 C 0.01 0.36 5.00 -17.43 -0.09 0.27 16 19 N -0.89 -25.02 11.47 55.49 0.64 -24.38 16 20 Si 0.89 21.34 29.59 -169.99 -5.03 16.31 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.16 3.36 3.37 -67.93 -0.23 3.13 16 25 C -0.15 -2.82 9.12 37.16 0.34 -2.48 16 26 C -0.15 -2.98 9.18 37.15 0.34 -2.64 16 27 C -0.04 -0.44 9.58 -39.23 -0.38 -0.82 16 28 C -0.16 -1.35 9.94 -39.46 -0.39 -1.74 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.10 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.41 0.92 8.81 -40.82 -0.36 0.56 16 33 H 0.14 1.56 6.30 -52.48 -0.33 1.23 16 34 H 0.13 1.25 6.39 -52.49 -0.34 0.92 16 35 H 0.40 4.93 6.49 -40.82 -0.27 4.66 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 2.42 5.58 -51.93 -0.29 2.13 16 41 H 0.02 0.53 7.89 -51.93 -0.41 0.12 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.04 0.88 7.77 -51.93 -0.40 0.47 16 44 H 0.05 1.00 7.36 -51.93 -0.38 0.62 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 1.31 7.46 -51.92 -0.39 0.93 16 50 H 0.14 1.55 7.64 -52.48 -0.40 1.14 16 51 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 418.20 15.07 6.30 6.30 Total: -1.00 -33.92 418.20 -9.24 -43.15 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.15 Total: 4.88 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.39 Total: -0.68 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.14 Total: -53.58 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.17 Total: -16.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.92 -9.24 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732015061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.714 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds