Wall clock time and date at job start Wed Apr 1 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21273 * 120.00136 * 2 1 4 4 N 1.34774 * 119.99972 * 180.02562 * 2 1 3 5 5 C 1.39441 * 120.00132 * 184.60879 * 4 2 1 6 6 C 1.39140 * 119.92481 * 32.30119 * 5 4 2 7 7 C 1.37669 * 120.07325 * 180.27546 * 6 5 4 8 8 C 1.39746 * 119.92624 * 359.51485 * 7 6 5 9 9 C 1.47597 * 120.07186 * 180.23091 * 8 7 6 10 10 O 1.21588 * 119.99443 * 180.25463 * 9 8 7 11 11 N 1.34769 * 120.00161 * 0.25215 * 9 8 7 12 12 C 1.46507 * 119.99968 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46963 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47019 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47177 * 179.97438 * 14 13 12 16 16 C 1.36942 * 120.00363 * 89.99707 * 15 14 13 17 17 H 1.07996 * 120.00075 * 219.58228 * 16 15 14 18 18 C 1.38810 * 119.99843 * 39.57958 * 16 15 14 19 19 N 1.31627 * 119.99924 * 19.06407 * 18 16 15 20 20 Si 1.86797 * 119.99940 * 199.07014 * 18 16 15 21 21 H 1.48496 * 109.47511 * 59.99997 * 20 18 16 22 22 H 1.48500 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46921 * 299.99750 * 20 18 16 24 24 C 1.46507 * 119.99995 * 269.99745 * 15 14 13 25 25 C 1.53003 * 109.47076 * 116.65902 * 24 15 14 26 26 C 1.52992 * 109.47307 * 236.66284 * 24 15 14 27 27 C 1.39748 * 119.85152 * 0.48290 * 8 7 6 28 28 C 1.37669 * 119.92906 * 359.75144 * 27 8 7 29 29 H 1.09005 * 109.47292 * 239.99744 * 1 2 3 30 30 H 1.08996 * 109.47484 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46874 * 120.00420 * 1 2 3 32 32 H 0.97003 * 120.00038 * 4.60966 * 4 2 1 33 33 H 1.08003 * 119.96033 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.03405 * 179.72436 * 7 6 5 35 35 H 0.97005 * 119.99919 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46570 * 299.99987 * 12 11 9 37 37 H 1.08997 * 109.46868 * 60.00198 * 12 11 9 38 38 H 1.09001 * 109.46850 * 299.99609 * 13 12 11 39 39 H 1.09001 * 109.47443 * 59.99486 * 13 12 11 40 40 H 1.09001 * 109.46965 * 299.99508 * 14 13 12 41 41 H 1.09001 * 109.47458 * 59.99464 * 14 13 12 42 42 H 0.97002 * 119.99616 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46728 * 356.66286 * 24 15 14 44 44 H 1.08994 * 109.47021 * 65.37349 * 25 24 15 45 45 H 1.08997 * 109.47046 * 185.37462 * 25 24 15 46 46 H 1.08997 * 109.47207 * 305.37214 * 25 24 15 47 47 H 1.09000 * 109.47482 * 63.77534 * 26 24 15 48 48 H 1.09000 * 109.47510 * 183.77783 * 26 24 15 49 49 H 1.09008 * 109.46925 * 303.77829 * 26 24 15 50 50 H 1.08005 * 120.03944 * 179.72193 * 27 8 7 51 51 H 1.08001 * 119.96486 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5719 -1.1692 0.0965 6 6 4.2181 -0.1780 0.8285 7 6 5.5916 -0.1738 0.9216 8 6 6.3364 -1.1724 0.2884 9 6 7.8088 -1.1739 0.3903 10 8 8.4557 -2.0408 -0.1650 11 7 8.4362 -0.2145 1.0990 12 6 9.8978 -0.2157 1.1997 13 6 10.3511 0.9700 2.0538 14 6 11.8775 0.9691 2.1585 15 7 12.3116 2.1048 2.9758 16 6 12.4473 1.9610 4.3309 17 1 12.1381 2.7570 4.9920 18 6 12.9824 0.7922 4.8546 19 7 13.6937 -0.0073 4.0881 20 14 12.6928 0.3537 6.6472 21 1 11.2346 0.2235 6.8957 22 1 13.3651 -0.9338 6.9566 23 1 13.2492 1.4230 7.5144 24 6 12.6005 3.3944 2.3434 25 6 11.6198 4.4479 2.8623 26 6 14.0310 3.8190 2.6813 27 6 5.6842 -2.1665 -0.4460 28 6 4.3106 -2.1621 -0.5392 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6982 -2.0059 -0.0684 33 1 3.6416 0.5913 1.3208 34 1 6.0928 0.5985 1.4863 35 1 7.9200 0.4769 1.5423 36 1 10.2292 -1.1448 1.6634 37 1 10.3307 -0.1324 0.2028 38 1 10.0196 1.8993 1.5904 39 1 9.9181 0.8864 3.0506 40 1 12.2094 0.0398 2.6216 41 1 12.3101 1.0529 1.1615 42 1 14.0673 -0.8243 4.4541 43 1 12.4950 3.3007 1.2626 44 1 11.7905 4.6104 3.9264 45 1 11.7719 5.3828 2.3230 46 1 10.5982 4.1010 2.7070 47 1 14.7331 3.1032 2.2536 48 1 14.2237 4.8087 2.2672 49 1 14.1554 3.8475 3.7639 50 1 6.2570 -2.9372 -0.9404 51 1 3.8060 -2.9304 -1.1062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732015061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:03 Heat of formation + Delta-G solvation = -57.201661 kcal Electronic energy + Delta-G solvation = -29588.571206 eV Core-core repulsion = 25487.243976 eV Total energy + Delta-G solvation = -4101.327230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.74391 -40.87092 -39.09231 -38.46393 -36.41628 -35.91725 -34.27339 -33.34460 -32.05374 -31.92297 -30.55695 -29.57075 -27.72464 -27.12627 -25.32373 -24.12815 -23.98310 -22.39673 -21.79515 -21.32759 -21.22446 -19.17064 -18.60253 -18.18473 -17.97452 -17.12043 -16.97172 -16.55475 -16.49120 -16.06136 -15.78455 -15.65922 -15.36645 -15.24001 -14.97886 -14.64544 -14.52510 -14.42348 -14.07442 -13.90579 -13.74024 -13.31255 -13.26352 -13.24979 -13.14077 -13.01853 -12.83825 -12.69326 -12.51776 -12.36369 -12.35050 -12.14009 -11.91904 -11.69976 -11.54896 -11.31585 -11.27071 -11.13504 -10.93314 -10.45766 -10.18497 -10.07321 -9.23817 -8.44362 -7.74410 -5.39834 -0.31461 0.32698 1.39578 1.46261 1.48818 1.54232 1.87023 2.04442 2.13696 2.53835 2.82040 3.31519 3.61498 3.66294 3.70393 3.88111 3.89022 4.17786 4.23568 4.28338 4.36480 4.36966 4.45018 4.52559 4.55472 4.64241 4.67205 4.74217 4.81644 4.91516 4.95323 4.98573 5.04663 5.09949 5.11910 5.16414 5.18802 5.21270 5.23640 5.28791 5.34880 5.41333 5.49444 5.64419 5.69466 5.75970 5.85125 5.90581 6.37424 6.49062 6.56375 7.07258 7.14148 7.25974 7.95407 8.49120 9.20217 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.001962 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.408106 B =14269.102380 C =14583.770274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.573 6.573 4 N -0.660 5.660 5 C 0.171 3.829 6 C -0.145 4.145 7 C -0.063 4.063 8 C -0.168 4.168 9 C 0.552 3.448 10 O -0.584 6.584 11 N -0.712 5.712 12 C 0.133 3.867 13 C -0.122 4.122 14 C 0.152 3.848 15 N -0.592 5.592 16 C -0.246 4.246 17 H 0.054 0.946 18 C -0.037 4.037 19 N -0.918 5.918 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.298 1.298 23 H -0.277 1.277 24 C 0.152 3.848 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.047 4.047 28 C -0.144 4.144 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.434 0.566 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.411 0.589 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.248 0.752 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.024 0.976 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.138 0.862 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.020 -2.336 -9.682 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.451 6.451 4 N -0.307 5.307 5 C 0.074 3.926 6 C -0.166 4.166 7 C -0.082 4.082 8 C -0.172 4.172 9 C 0.342 3.658 10 O -0.466 6.466 11 N -0.364 5.364 12 C 0.009 3.991 13 C -0.163 4.163 14 C 0.025 3.975 15 N -0.313 5.313 16 C -0.377 4.377 17 H 0.072 0.928 18 C -0.234 4.234 19 N -0.562 5.562 20 Si 0.777 3.223 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.203 1.203 24 C 0.046 3.954 25 C -0.201 4.201 26 C -0.196 4.196 27 C -0.066 4.066 28 C -0.164 4.164 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.274 0.726 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.248 0.752 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.083 0.917 49 H 0.054 0.946 50 H 0.156 0.844 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -28.109 -2.297 -10.011 29.927 hybrid contribution 0.258 -0.530 1.297 1.425 sum -27.850 -2.826 -8.714 29.318 Atomic orbital electron populations 1.21972 0.86548 1.06635 1.07093 1.21981 0.92798 0.82301 0.73450 1.90762 1.71869 1.33092 1.49366 1.43566 1.03967 1.11202 1.71952 1.18090 0.84346 0.95793 0.94341 1.21145 0.94293 1.00518 1.00603 1.21307 0.93837 0.96529 0.96566 1.19868 0.91419 1.00199 1.05734 1.18664 0.88331 0.80875 0.77966 1.90740 1.68507 1.38811 1.48577 1.45949 1.07997 1.29954 1.52471 1.21183 0.79053 0.98958 0.99908 1.22150 0.99408 0.96203 0.98503 1.20676 0.90411 0.93632 0.92784 1.44037 1.76494 1.07341 1.03471 1.18984 1.33630 1.01663 0.83415 0.92822 1.25847 0.96864 1.00336 1.00320 1.70102 1.35012 1.14147 1.36927 0.85651 0.77780 0.76830 0.82033 1.20547 1.22458 1.20294 1.20665 0.93030 0.86479 0.95260 1.22039 0.99084 0.98398 1.00535 1.21954 0.97788 0.99233 1.00611 1.21200 0.94502 0.96276 0.94666 1.21088 0.92773 1.01050 1.01533 0.86412 0.89075 0.86295 0.72572 0.84724 0.84104 0.75187 0.93485 0.92034 0.91455 0.92835 0.92191 0.95574 0.94300 0.92492 0.94414 0.91568 0.93497 0.95708 0.91680 0.94558 0.84431 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.34 10.32 71.24 0.74 0.40 16 2 C 0.50 6.15 7.69 87.66 0.67 6.82 16 3 O -0.57 -13.24 14.65 -3.01 -0.04 -13.28 16 4 N -0.66 -5.98 5.32 -303.50 -1.62 -7.59 16 5 C 0.17 2.76 6.30 38.36 0.24 3.00 16 6 C -0.15 -3.00 8.63 22.35 0.19 -2.81 16 7 C -0.06 -1.38 9.53 22.50 0.21 -1.16 16 8 C -0.17 -4.27 5.88 -20.08 -0.12 -4.38 16 9 C 0.55 17.67 7.76 86.71 0.67 18.35 16 10 O -0.58 -23.03 16.34 -3.99 -0.07 -23.10 16 11 N -0.71 -21.27 5.51 -466.21 -2.57 -23.84 16 12 C 0.13 4.66 5.67 86.38 0.49 5.15 16 13 C -0.12 -4.52 5.65 30.59 0.17 -4.35 16 14 C 0.15 6.94 5.27 86.38 0.45 7.40 16 15 N -0.59 -28.20 2.35 -678.03 -1.59 -29.79 16 16 C -0.25 -12.97 8.03 84.03 0.67 -12.29 16 17 H 0.05 2.84 7.13 -2.91 -0.02 2.82 16 18 C -0.04 -2.00 5.00 84.86 0.42 -1.58 16 19 N -0.92 -53.52 11.47 21.65 0.25 -53.27 16 20 Si 0.95 44.64 29.59 68.60 2.03 46.67 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 C 0.15 6.10 3.37 44.99 0.15 6.25 16 25 C -0.14 -4.88 9.12 71.98 0.66 -4.22 16 26 C -0.14 -5.50 9.18 71.98 0.66 -4.84 16 27 C -0.05 -1.00 9.58 22.50 0.22 -0.79 16 28 C -0.14 -2.14 9.94 22.35 0.22 -1.92 16 29 H 0.12 -0.28 8.14 -2.38 -0.02 -0.30 16 30 H 0.09 0.38 8.12 -2.39 -0.02 0.36 16 31 H 0.12 -0.35 8.14 -2.38 -0.02 -0.37 16 32 H 0.43 0.19 8.81 -92.71 -0.82 -0.63 16 33 H 0.13 2.96 6.30 -2.91 -0.02 2.94 16 34 H 0.14 2.63 6.39 -2.91 -0.02 2.61 16 35 H 0.41 10.01 6.49 -92.70 -0.60 9.41 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 3.21 5.58 -2.39 -0.01 3.20 16 41 H 0.03 1.15 7.89 -2.39 -0.02 1.13 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.06 2.15 7.77 -2.39 -0.02 2.13 16 44 H 0.04 1.39 7.36 -2.39 -0.02 1.37 16 45 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.04 1.59 7.46 -2.38 -0.02 1.57 16 50 H 0.14 2.99 7.64 -2.91 -0.02 2.97 16 51 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -76.83 418.20 2.66 -74.17 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.47 Total: 21.00 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.74 Total: 9.02 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -5.53 Total: -114.49 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.11 Total: -36.38 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.83 2.66 -74.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732015061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.971 kcal (2) G-P(sol) polarization free energy of solvation -76.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds