Wall clock time and date at job start Wed Apr 1 2020 04:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46881 * 2 1 4 4 N 1.46500 * 109.46780 * 182.81797 * 3 2 1 5 5 C 1.34783 * 120.00223 * 97.87275 * 4 3 2 6 6 O 1.21510 * 120.00367 * 186.91059 * 5 4 3 7 7 C 1.48166 * 119.99661 * 6.91746 * 5 4 3 8 8 C 1.39969 * 120.88920 * 132.64605 * 7 5 4 9 9 C 1.37977 * 119.12931 * 180.29280 * 8 7 5 10 10 N 1.31906 * 120.97670 * 359.67957 * 9 8 7 11 11 C 1.32171 * 121.97591 * 0.02854 * 10 9 8 12 12 O 1.35686 * 119.62552 * 180.02562 * 11 10 9 13 13 C 1.42896 * 116.99803 * 0.02562 * 12 11 10 14 14 C 1.38902 * 120.75031 * 0.02562 * 11 10 9 15 15 C 1.46503 * 120.00129 * 277.87649 * 4 3 2 16 16 C 1.53042 * 109.45902 * 240.02681 * 15 4 3 17 17 C 1.53193 * 109.30927 * 178.59636 * 16 15 4 18 18 N 1.46924 * 108.76259 * 54.66015 * 17 16 15 19 19 C 1.36935 * 120.63079 * 126.40351 * 18 17 16 20 20 H 1.07997 * 120.00240 * 329.45253 * 19 18 17 21 21 C 1.38820 * 119.99869 * 149.45269 * 19 18 17 22 22 N 1.31619 * 119.99596 * 173.89551 * 21 19 18 23 23 Si 1.86794 * 120.00186 * 353.89813 * 21 19 18 24 24 H 1.48501 * 109.47347 * 91.92654 * 23 21 19 25 25 H 1.48496 * 109.47142 * 211.92846 * 23 21 19 26 26 H 1.48502 * 109.47005 * 331.92352 * 23 21 19 27 27 C 1.46927 * 118.73850 * 306.37982 * 18 17 16 28 28 C 1.53036 * 109.45955 * 119.97105 * 15 4 3 29 29 H 1.08997 * 109.47367 * 300.00878 * 1 2 3 30 30 H 1.09000 * 109.46929 * 60.00339 * 1 2 3 31 31 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47435 * 239.99627 * 2 1 3 33 33 H 1.09000 * 109.46929 * 119.99661 * 2 1 3 34 34 H 1.08996 * 109.47247 * 62.81684 * 3 2 1 35 35 H 1.08999 * 109.46881 * 302.81397 * 3 2 1 36 36 H 1.07995 * 120.43896 * 359.97438 * 8 7 5 37 37 H 1.08003 * 119.51420 * 179.70428 * 9 8 7 38 38 H 1.09000 * 109.47287 * 60.00741 * 13 12 11 39 39 H 1.09002 * 109.46655 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47279 * 300.00048 * 13 12 11 41 41 H 1.07995 * 120.52155 * 179.97438 * 14 11 10 42 42 H 1.08998 * 109.45668 * 359.97438 * 15 4 3 43 43 H 1.08998 * 109.49662 * 298.56434 * 16 15 4 44 44 H 1.09002 * 109.49643 * 58.66273 * 16 15 4 45 45 H 1.08997 * 109.60414 * 294.86958 * 17 16 15 46 46 H 1.09002 * 109.70133 * 174.50754 * 17 16 15 47 47 H 0.97010 * 120.00048 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58616 * 293.82254 * 27 18 17 49 49 H 1.09002 * 109.70454 * 173.47283 * 27 18 17 50 50 H 1.08999 * 109.50011 * 301.33563 * 28 15 4 51 51 H 1.09001 * 109.49954 * 61.43640 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5034 1.4431 -0.0679 5 6 4.1231 1.6221 -1.2514 6 8 5.3292 1.4981 -1.3306 7 6 3.3335 1.9704 -2.4558 8 6 3.7333 3.0124 -3.3005 9 6 2.9675 3.3097 -4.4091 10 7 1.8744 2.6241 -4.6829 11 6 1.4622 1.6289 -3.9169 12 8 0.3307 0.9551 -4.2439 13 6 -0.3569 1.3760 -5.4237 14 6 2.1741 1.2649 -2.7812 15 6 4.2933 1.2489 1.1505 16 6 5.1838 2.4721 1.3812 17 6 5.9822 2.2808 2.6745 18 7 6.7133 1.0089 2.5948 19 6 8.0660 0.9674 2.8036 20 1 8.6786 1.8185 2.5455 21 6 8.6499 -0.1687 3.3472 22 7 9.9601 -0.2565 3.4369 23 14 7.5762 -1.5727 3.9513 24 1 7.3780 -2.5524 2.8530 25 1 8.2377 -2.2432 5.0993 26 1 6.2591 -1.0388 4.3820 27 6 5.9654 -0.2178 2.2872 28 6 5.1668 0.0016 0.9984 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7184 1.9416 0.9141 35 1 1.6360 1.9707 -0.8637 36 1 4.6267 3.5795 -3.0848 37 1 3.2676 4.1156 -5.0625 38 1 0.3035 1.2744 -6.2849 39 1 -1.2418 0.7564 -5.5690 40 1 -0.6572 2.4184 -5.3169 41 1 1.8337 0.4514 -2.1577 42 1 3.6236 1.1222 2.0011 43 1 5.8708 2.5852 0.5425 44 1 4.5624 3.3636 1.4660 45 1 5.3008 2.2579 3.5249 46 1 6.6891 3.1017 2.7948 47 1 10.3682 -1.0502 3.8172 48 1 5.2826 -0.4445 3.1061 49 1 6.6596 -1.0470 2.1503 50 1 4.5335 -0.8655 0.8108 51 1 5.8541 0.1383 0.1635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752439881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:31 Heat of formation + Delta-G solvation = 10.157570 kcal Electronic energy + Delta-G solvation = -32124.749042 eV Core-core repulsion = 28026.342728 eV Total energy + Delta-G solvation = -4098.406315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.31240 -40.07969 -38.18602 -37.26256 -36.39585 -33.72011 -32.85685 -31.97378 -31.04772 -30.41594 -30.15448 -27.68347 -26.47723 -25.54652 -24.07384 -23.62773 -22.93681 -22.14924 -21.79098 -20.25603 -19.57097 -17.99811 -17.54465 -16.95020 -16.68297 -16.46354 -16.31404 -15.93780 -15.31038 -15.00944 -14.82451 -14.40925 -14.34852 -14.16269 -13.81114 -13.77773 -13.69516 -13.29945 -13.14655 -12.96122 -12.59447 -12.44121 -12.40691 -12.15516 -12.03441 -11.81912 -11.68015 -11.58588 -11.55933 -11.16408 -11.00902 -10.92949 -10.39860 -10.35454 -10.12293 -10.05941 -9.92005 -9.64912 -9.40129 -9.29771 -8.85988 -8.66177 -8.51115 -6.86322 -5.84794 -3.29112 0.55419 0.82924 2.54670 2.71735 2.91503 3.35262 3.45291 3.46061 3.51928 3.91335 4.18675 4.56538 4.58469 4.61333 4.67294 4.75465 4.86281 4.91219 4.96223 4.99270 5.03845 5.13106 5.23165 5.24541 5.26801 5.33625 5.39098 5.45842 5.49395 5.54509 5.61524 5.75495 5.77834 5.81765 5.92290 5.94954 6.03500 6.09886 6.12100 6.19556 6.30262 6.43648 6.57023 6.65264 6.74866 6.84754 6.87868 7.03911 7.41171 7.45546 8.06851 8.12595 8.41411 8.99829 9.78148 10.15688 11.31425 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.002932 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.813397 B = 9546.599956 C =10286.778956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.096 3.904 4 N -0.601 5.601 5 C 0.555 3.445 6 O -0.500 6.500 7 C -0.040 4.040 8 C -0.163 4.163 9 C 0.139 3.861 10 N -0.532 5.532 11 C 0.317 3.683 12 O -0.306 6.306 13 C 0.040 3.960 14 C -0.175 4.175 15 C 0.161 3.839 16 C -0.149 4.149 17 C 0.157 3.843 18 N -0.606 5.606 19 C -0.255 4.255 20 H 0.086 0.914 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.896 3.104 24 H -0.291 1.291 25 H -0.308 1.308 26 H -0.262 1.262 27 C 0.126 3.874 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.167 0.833 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.157 0.843 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.066 0.934 47 H 0.262 0.738 48 H 0.032 0.968 49 H 0.068 0.932 50 H 0.049 0.951 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.860 5.479 -14.264 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C -0.027 4.027 4 N -0.333 5.333 5 C 0.341 3.659 6 O -0.375 6.375 7 C -0.051 4.051 8 C -0.184 4.184 9 C -0.016 4.016 10 N -0.256 5.256 11 C 0.138 3.862 12 O -0.213 6.213 13 C -0.055 4.055 14 C -0.196 4.196 15 C 0.059 3.941 16 C -0.189 4.189 17 C 0.031 3.969 18 N -0.330 5.330 19 C -0.384 4.384 20 H 0.103 0.897 21 C -0.180 4.180 22 N -0.564 5.564 23 Si 0.729 3.271 24 H -0.220 1.220 25 H -0.237 1.237 26 H -0.187 1.187 27 C 0.000 4.000 28 C -0.192 4.192 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.165 0.835 37 H 0.184 0.816 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.175 0.825 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.049 0.951 49 H 0.086 0.914 50 H 0.068 0.932 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.670 5.317 -14.816 29.264 hybrid contribution -0.143 -1.022 0.670 1.230 sum -24.813 4.295 -14.146 28.883 Atomic orbital electron populations 1.21714 0.94783 1.02222 1.02099 1.22099 0.96425 0.97065 1.03092 1.21946 0.79745 0.97292 1.03689 1.48200 1.06507 1.70983 1.07562 1.18168 0.87255 0.77959 0.82541 1.90859 1.13389 1.48879 1.84339 1.20292 0.93531 0.95473 0.95776 1.22082 1.02021 0.98665 0.95598 1.22387 0.88351 0.96435 0.94445 1.67174 1.17935 1.08529 1.31980 1.19657 0.87123 0.89206 0.90233 1.86247 1.34597 1.55356 1.45140 1.22872 0.96032 1.01045 0.85534 1.21674 0.95509 1.04181 0.98202 1.21114 0.92144 0.96723 0.84093 1.22456 0.98969 0.95469 1.02028 1.20828 0.94018 0.89346 0.92756 1.44299 1.05082 1.01806 1.81827 1.18953 0.80836 1.03327 1.35243 0.89665 1.25336 0.95580 0.98777 0.98302 1.69738 1.08642 1.29075 1.48911 0.86878 0.80660 0.82247 0.77347 1.21994 1.23729 1.18717 1.21539 0.94309 0.90908 0.93213 1.22549 0.99192 0.95214 1.02231 0.92415 0.92376 0.92249 0.91381 0.90821 0.90180 0.89709 0.83515 0.81615 0.92243 0.88556 0.92236 0.82549 0.90010 0.90021 0.92889 0.95994 0.91541 0.92852 0.95054 0.91417 0.93185 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.15 -1.32 5.45 -26.73 -0.15 -1.46 16 3 C 0.10 0.93 4.82 -4.04 -0.02 0.91 16 4 N -0.60 -7.98 2.43 -167.05 -0.41 -8.38 16 5 C 0.55 8.28 6.71 -12.18 -0.08 8.20 16 6 O -0.50 -9.58 13.32 5.36 0.07 -9.51 16 7 C -0.04 -0.48 5.06 -104.68 -0.53 -1.01 16 8 C -0.16 -1.74 9.83 -39.03 -0.38 -2.12 16 9 C 0.14 1.28 11.17 -17.62 -0.20 1.08 16 10 N -0.53 -5.57 9.18 -13.38 -0.12 -5.69 16 11 C 0.32 3.42 7.49 -17.16 -0.13 3.29 16 12 O -0.31 -2.99 10.47 -18.76 -0.20 -3.18 16 13 C 0.04 0.27 10.38 101.05 1.05 1.32 16 14 C -0.17 -1.91 7.47 -38.84 -0.29 -2.20 16 15 C 0.16 2.53 2.49 -67.89 -0.17 2.37 16 16 C -0.15 -2.57 5.27 -26.61 -0.14 -2.71 16 17 C 0.16 3.14 6.52 -3.71 -0.02 3.11 16 18 N -0.61 -14.80 2.82 -172.32 -0.49 -15.28 16 19 C -0.25 -7.38 10.13 -15.06 -0.15 -7.53 16 20 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 21 C 0.02 0.54 5.44 -17.43 -0.09 0.44 16 22 N -0.92 -29.17 13.97 55.49 0.78 -28.39 16 23 Si 0.90 23.02 24.27 -169.99 -4.13 18.90 16 24 H -0.29 -7.35 6.78 56.52 0.38 -6.97 16 25 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 26 H -0.26 -6.33 5.40 56.52 0.31 -6.03 16 27 C 0.13 2.82 4.07 -3.71 -0.02 2.81 16 28 C -0.15 -2.88 5.26 -26.61 -0.14 -3.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.65 6.10 -51.93 -0.32 0.33 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.08 0.77 5.08 -51.93 -0.26 0.50 16 36 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 38 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.39 8.10 -51.93 -0.42 -0.04 16 41 H 0.16 1.57 4.01 -52.49 -0.21 1.36 16 42 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 43 H 0.08 1.63 6.45 -51.93 -0.34 1.30 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 47 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 48 H 0.03 0.68 6.47 -51.93 -0.34 0.34 16 49 H 0.07 1.68 3.92 -51.93 -0.20 1.48 16 50 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 2.01 6.00 -51.93 -0.31 1.70 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -34.67 388.99 -7.68 -42.35 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.96 Total: 0.54 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.09 Total: 2.80 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.24 Total: -57.76 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.13 Total: -12.69 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.13 Total: 18.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.67 -7.68 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752439881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.509 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds