Wall clock time and date at job start Wed Apr 1 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46881 * 2 1 4 4 N 1.46500 * 109.46780 * 182.81797 * 3 2 1 5 5 C 1.34783 * 120.00223 * 97.87275 * 4 3 2 6 6 O 1.21510 * 120.00367 * 186.91059 * 5 4 3 7 7 C 1.48166 * 119.99661 * 6.91746 * 5 4 3 8 8 C 1.39969 * 120.88920 * 132.64605 * 7 5 4 9 9 C 1.37977 * 119.12931 * 180.29280 * 8 7 5 10 10 N 1.31906 * 120.97670 * 359.67957 * 9 8 7 11 11 C 1.32171 * 121.97591 * 0.02854 * 10 9 8 12 12 O 1.35686 * 119.62552 * 180.02562 * 11 10 9 13 13 C 1.42896 * 116.99803 * 0.02562 * 12 11 10 14 14 C 1.38902 * 120.75031 * 0.02562 * 11 10 9 15 15 C 1.46503 * 120.00129 * 277.87649 * 4 3 2 16 16 C 1.53042 * 109.45902 * 240.02681 * 15 4 3 17 17 C 1.53193 * 109.30927 * 178.59636 * 16 15 4 18 18 N 1.46924 * 108.76259 * 54.66015 * 17 16 15 19 19 C 1.36935 * 120.63079 * 126.40351 * 18 17 16 20 20 H 1.07997 * 120.00240 * 329.45253 * 19 18 17 21 21 C 1.38820 * 119.99869 * 149.45269 * 19 18 17 22 22 N 1.31619 * 119.99596 * 173.89551 * 21 19 18 23 23 Si 1.86794 * 120.00186 * 353.89813 * 21 19 18 24 24 H 1.48501 * 109.47347 * 91.92654 * 23 21 19 25 25 H 1.48496 * 109.47142 * 211.92846 * 23 21 19 26 26 H 1.48502 * 109.47005 * 331.92352 * 23 21 19 27 27 C 1.46927 * 118.73850 * 306.37982 * 18 17 16 28 28 C 1.53036 * 109.45955 * 119.97105 * 15 4 3 29 29 H 1.08997 * 109.47367 * 300.00878 * 1 2 3 30 30 H 1.09000 * 109.46929 * 60.00339 * 1 2 3 31 31 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47435 * 239.99627 * 2 1 3 33 33 H 1.09000 * 109.46929 * 119.99661 * 2 1 3 34 34 H 1.08996 * 109.47247 * 62.81684 * 3 2 1 35 35 H 1.08999 * 109.46881 * 302.81397 * 3 2 1 36 36 H 1.07995 * 120.43896 * 359.97438 * 8 7 5 37 37 H 1.08003 * 119.51420 * 179.70428 * 9 8 7 38 38 H 1.09000 * 109.47287 * 60.00741 * 13 12 11 39 39 H 1.09002 * 109.46655 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47279 * 300.00048 * 13 12 11 41 41 H 1.07995 * 120.52155 * 179.97438 * 14 11 10 42 42 H 1.08998 * 109.45668 * 359.97438 * 15 4 3 43 43 H 1.08998 * 109.49662 * 298.56434 * 16 15 4 44 44 H 1.09002 * 109.49643 * 58.66273 * 16 15 4 45 45 H 1.08997 * 109.60414 * 294.86958 * 17 16 15 46 46 H 1.09002 * 109.70133 * 174.50754 * 17 16 15 47 47 H 0.97010 * 120.00048 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58616 * 293.82254 * 27 18 17 49 49 H 1.09002 * 109.70454 * 173.47283 * 27 18 17 50 50 H 1.08999 * 109.50011 * 301.33563 * 28 15 4 51 51 H 1.09001 * 109.49954 * 61.43640 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5034 1.4431 -0.0679 5 6 4.1231 1.6221 -1.2514 6 8 5.3292 1.4981 -1.3306 7 6 3.3335 1.9704 -2.4558 8 6 3.7333 3.0124 -3.3005 9 6 2.9675 3.3097 -4.4091 10 7 1.8744 2.6241 -4.6829 11 6 1.4622 1.6289 -3.9169 12 8 0.3307 0.9551 -4.2439 13 6 -0.3569 1.3760 -5.4237 14 6 2.1741 1.2649 -2.7812 15 6 4.2933 1.2489 1.1505 16 6 5.1838 2.4721 1.3812 17 6 5.9822 2.2808 2.6745 18 7 6.7133 1.0089 2.5948 19 6 8.0660 0.9674 2.8036 20 1 8.6786 1.8185 2.5455 21 6 8.6499 -0.1687 3.3472 22 7 9.9601 -0.2565 3.4369 23 14 7.5762 -1.5727 3.9513 24 1 7.3780 -2.5524 2.8530 25 1 8.2377 -2.2432 5.0993 26 1 6.2591 -1.0388 4.3820 27 6 5.9654 -0.2178 2.2872 28 6 5.1668 0.0016 0.9984 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7184 1.9416 0.9141 35 1 1.6360 1.9707 -0.8637 36 1 4.6267 3.5795 -3.0848 37 1 3.2676 4.1156 -5.0625 38 1 0.3035 1.2744 -6.2849 39 1 -1.2418 0.7564 -5.5690 40 1 -0.6572 2.4184 -5.3169 41 1 1.8337 0.4514 -2.1577 42 1 3.6236 1.1222 2.0011 43 1 5.8708 2.5852 0.5425 44 1 4.5624 3.3636 1.4660 45 1 5.3008 2.2579 3.5249 46 1 6.6891 3.1017 2.7948 47 1 10.3682 -1.0502 3.8172 48 1 5.2826 -0.4445 3.1061 49 1 6.6596 -1.0470 2.1503 50 1 4.5335 -0.8655 0.8108 51 1 5.8541 0.1383 0.1635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752439881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:29 Heat of formation + Delta-G solvation = -14.339469 kcal Electronic energy + Delta-G solvation = -32125.811314 eV Core-core repulsion = 28026.342728 eV Total energy + Delta-G solvation = -4099.468586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.22928 -41.09690 -39.21326 -38.55786 -37.46859 -35.15508 -33.69791 -33.67844 -32.02920 -31.79851 -31.75202 -28.32966 -27.39138 -27.00949 -25.20345 -24.64428 -24.48938 -23.48289 -22.67253 -21.60770 -20.70825 -19.18180 -18.68606 -18.31171 -17.60093 -17.49001 -17.38564 -17.00890 -16.68569 -16.29238 -15.92704 -15.68420 -15.43880 -15.23450 -15.14989 -14.76869 -14.72099 -14.60766 -14.40691 -14.20742 -14.03104 -13.84681 -13.47254 -13.23441 -13.11537 -12.89438 -12.70512 -12.66325 -12.57260 -12.27084 -12.19895 -12.14541 -11.96850 -11.73563 -11.63099 -11.50129 -11.22116 -11.04640 -10.93948 -10.79037 -10.53774 -9.73137 -9.59491 -8.88345 -8.14331 -5.55649 -0.31075 0.04363 1.29794 1.38819 1.49165 1.52212 1.75675 2.08059 2.41585 2.63862 3.11858 3.12771 3.29218 3.35417 3.79085 3.84856 3.88129 3.91525 3.93103 4.06747 4.14363 4.21411 4.32685 4.34537 4.44117 4.46847 4.50129 4.51137 4.52126 4.62376 4.64979 4.68367 4.72163 4.76660 4.79908 4.90325 4.94447 4.97717 5.02821 5.08684 5.20330 5.21310 5.24882 5.32700 5.40917 5.48831 5.64928 5.88059 6.12188 6.13947 6.30649 6.68499 6.91217 7.01018 7.60703 8.00539 9.05608 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.002932 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.813397 B = 9546.599956 C =10286.778956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C 0.094 3.906 4 N -0.593 5.593 5 C 0.553 3.447 6 O -0.554 6.554 7 C -0.052 4.052 8 C -0.171 4.171 9 C 0.149 3.851 10 N -0.537 5.537 11 C 0.312 3.688 12 O -0.314 6.314 13 C 0.035 3.965 14 C -0.174 4.174 15 C 0.167 3.833 16 C -0.138 4.138 17 C 0.152 3.848 18 N -0.622 5.622 19 C -0.246 4.246 20 H 0.043 0.957 21 C -0.048 4.048 22 N -0.971 5.971 23 Si 0.964 3.036 24 H -0.287 1.287 25 H -0.316 1.316 26 H -0.230 1.230 27 C 0.122 3.878 28 C -0.143 4.143 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.147 0.853 37 H 0.200 0.800 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.062 0.938 41 H 0.164 0.836 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.260 0.740 48 H 0.056 0.944 49 H 0.040 0.960 50 H 0.072 0.928 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.704 5.535 -14.570 33.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C -0.028 4.028 4 N -0.323 5.323 5 C 0.340 3.660 6 O -0.432 6.432 7 C -0.063 4.063 8 C -0.192 4.192 9 C -0.007 4.007 10 N -0.261 5.261 11 C 0.133 3.867 12 O -0.221 6.221 13 C -0.059 4.059 14 C -0.194 4.194 15 C 0.065 3.935 16 C -0.177 4.177 17 C 0.027 3.973 18 N -0.347 5.347 19 C -0.376 4.376 20 H 0.061 0.939 21 C -0.242 4.242 22 N -0.618 5.618 23 Si 0.794 3.206 24 H -0.215 1.215 25 H -0.246 1.246 26 H -0.153 1.153 27 C -0.003 4.003 28 C -0.183 4.183 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.165 0.835 37 H 0.217 0.783 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.181 0.819 42 H 0.132 0.868 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.622 5.400 -15.140 33.702 hybrid contribution 1.342 -0.922 0.615 1.741 sum -28.280 4.477 -14.525 32.105 Atomic orbital electron populations 1.21670 0.93110 1.02681 1.02783 1.22063 0.97776 0.96138 1.02405 1.22221 0.77029 0.98296 1.05220 1.48151 1.07960 1.69954 1.06255 1.18604 0.86775 0.76948 0.83645 1.90848 1.15782 1.51257 1.85286 1.20111 0.94130 0.96772 0.95307 1.22216 1.02364 0.98596 0.96026 1.22883 0.87337 0.96497 0.93964 1.67276 1.18291 1.08607 1.31956 1.19777 0.87484 0.89267 0.90154 1.86240 1.34214 1.55365 1.46240 1.23108 0.96554 1.01903 0.84341 1.21658 0.95063 1.04135 0.98580 1.20942 0.92280 0.94171 0.86138 1.22271 0.98691 0.97803 0.98964 1.21023 0.94132 0.86906 0.95226 1.44430 1.03761 1.04157 1.82374 1.18847 0.83059 1.01861 1.33822 0.93927 1.26145 0.96847 1.02028 0.99134 1.69915 1.10831 1.30171 1.50908 0.85781 0.79961 0.78582 0.76283 1.21493 1.24614 1.15288 1.21595 0.94102 0.89066 0.95551 1.22359 0.99014 0.98002 0.98895 0.91360 0.92060 0.91948 0.92408 0.91208 0.87975 0.88901 0.83534 0.78299 0.92554 0.85922 0.91956 0.81853 0.86782 0.93565 0.89566 0.92957 0.92997 0.93089 0.92646 0.94160 0.90900 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.15 -2.10 5.45 30.60 0.17 -1.93 16 3 C 0.09 1.48 4.82 86.38 0.42 1.90 16 4 N -0.59 -14.45 2.43 -800.70 -1.94 -16.40 16 5 C 0.55 16.26 6.71 86.88 0.58 16.84 16 6 O -0.55 -21.96 13.32 -3.75 -0.05 -22.01 16 7 C -0.05 -1.23 5.06 -19.90 -0.10 -1.33 16 8 C -0.17 -3.49 9.83 22.63 0.22 -3.26 16 9 C 0.15 2.41 11.17 84.62 0.94 3.36 16 10 N -0.54 -10.05 9.18 -309.13 -2.84 -12.89 16 11 C 0.31 6.09 7.49 84.80 0.63 6.73 16 12 O -0.31 -5.37 10.47 -90.05 -0.94 -6.32 16 13 C 0.04 0.39 10.38 113.37 1.18 1.56 16 14 C -0.17 -3.49 7.47 22.75 0.17 -3.32 16 15 C 0.17 4.84 2.49 45.02 0.11 4.95 16 16 C -0.14 -4.54 5.27 30.67 0.16 -4.38 16 17 C 0.15 5.92 6.52 86.36 0.56 6.48 16 18 N -0.62 -30.39 2.82 -699.09 -1.97 -32.36 16 19 C -0.25 -14.80 10.13 84.04 0.85 -13.95 16 20 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 21 C -0.05 -2.98 5.44 84.86 0.46 -2.51 16 22 N -0.97 -64.44 13.97 21.65 0.30 -64.14 16 23 Si 0.96 48.12 24.27 68.60 1.67 49.78 16 24 H -0.29 -13.97 6.78 99.48 0.67 -13.29 16 25 H -0.32 -16.05 7.11 99.48 0.71 -15.35 16 26 H -0.23 -10.12 5.40 99.48 0.54 -9.58 16 27 C 0.12 5.26 4.07 86.36 0.35 5.61 16 28 C -0.14 -5.24 5.26 30.67 0.16 -5.08 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.96 6.10 -2.39 -0.01 0.95 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 35 H 0.09 1.38 5.08 -2.39 -0.01 1.37 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 37 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 39 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.65 8.10 -2.38 -0.02 0.63 16 41 H 0.16 2.96 4.01 -2.91 -0.01 2.95 16 42 H 0.11 2.66 7.90 -2.39 -0.02 2.64 16 43 H 0.05 1.88 6.45 -2.39 -0.02 1.87 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 47 H 0.26 16.37 8.31 -92.70 -0.77 15.60 16 48 H 0.06 2.16 6.47 -2.38 -0.02 2.14 16 49 H 0.04 1.97 3.92 -2.39 -0.01 1.96 16 50 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.05 2.45 6.00 -2.39 -0.01 2.44 16 Total: -1.00 -80.51 388.99 2.55 -77.97 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.73 Total: 15.50 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.59 Total: 10.87 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -6.45 Total: -125.80 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.99 Total: -28.33 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.67 Total: 49.78 kcal Total: -80.51 2.55 -77.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752439881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.626 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds