Wall clock time and date at job start Wed Apr 1 2020 05:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46984 * 2 1 4 4 N 1.46501 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.36930 * 120.00227 * 269.99789 * 4 3 2 6 6 H 1.08007 * 120.00570 * 142.03453 * 5 4 3 7 7 C 1.38816 * 119.99729 * 322.03527 * 5 4 3 8 8 N 1.31629 * 119.99704 * 157.22435 * 7 5 4 9 9 Si 1.86795 * 120.00153 * 337.22632 * 7 5 4 10 10 H 1.48498 * 109.46974 * 93.84846 * 9 7 5 11 11 H 1.48499 * 109.46965 * 213.84779 * 9 7 5 12 12 H 1.48494 * 109.46979 * 333.84774 * 9 7 5 13 13 C 1.46507 * 120.00047 * 89.99517 * 4 3 2 14 14 C 1.52995 * 109.47337 * 266.84531 * 13 4 3 15 15 N 1.46505 * 109.47235 * 184.35561 * 14 13 4 16 16 C 1.34772 * 119.99878 * 179.97438 * 15 14 13 17 17 O 1.21361 * 120.00419 * 359.97438 * 16 15 14 18 18 C 1.49355 * 119.99867 * 180.02562 * 16 15 14 19 19 O 1.21371 * 119.99741 * 359.97438 * 18 16 15 20 20 N 1.34772 * 119.99867 * 179.97438 * 18 16 15 21 21 C 1.39722 * 119.99963 * 184.24380 * 20 18 16 22 22 C 1.38932 * 120.07531 * 53.42934 * 21 20 18 23 23 C 1.50697 * 120.03833 * 359.97438 * 22 21 20 24 24 C 1.38099 * 119.92379 * 180.25637 * 22 21 20 25 25 C 1.38301 * 120.07326 * 359.44671 * 24 22 21 26 26 C 1.38287 * 120.15362 * 0.28086 * 25 24 22 27 27 C 1.38095 * 120.07907 * 359.97438 * 26 25 24 28 28 C 1.50699 * 120.04108 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.46996 * 60.00013 * 1 2 3 30 30 H 1.08995 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46571 * 300.00485 * 1 2 3 32 32 H 1.09000 * 109.46571 * 239.99515 * 2 1 3 33 33 H 1.08999 * 109.46624 * 119.99619 * 2 1 3 34 34 H 1.08994 * 109.47855 * 59.99867 * 3 2 1 35 35 H 1.08999 * 109.47129 * 299.99310 * 3 2 1 36 36 H 0.96993 * 119.99460 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46979 * 146.84171 * 13 4 3 38 38 H 1.09000 * 109.46957 * 26.84287 * 13 4 3 39 39 H 1.08993 * 109.47524 * 64.35079 * 14 13 4 40 40 H 1.09006 * 109.46745 * 304.35236 * 14 13 4 41 41 H 0.96995 * 119.99609 * 0.02562 * 15 14 13 42 42 H 0.97003 * 120.00563 * 4.24865 * 20 18 16 43 43 H 1.09000 * 109.47120 * 263.66365 * 23 22 21 44 44 H 1.08996 * 109.47109 * 23.66461 * 23 22 21 45 45 H 1.09005 * 109.46793 * 143.66174 * 23 22 21 46 46 H 1.07995 * 119.96591 * 179.72614 * 24 22 21 47 47 H 1.07995 * 119.92094 * 180.25563 * 25 24 22 48 48 H 1.08002 * 119.96388 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47206 * 90.00095 * 28 27 26 50 50 H 1.09004 * 109.46726 * 210.00426 * 28 27 26 51 51 H 1.09002 * 109.47085 * 329.99630 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1903 1.4423 1.1849 6 1 5.0990 0.8669 1.2835 7 6 3.7169 2.1818 2.2602 8 7 4.0717 1.8610 3.4865 9 14 2.5766 3.6319 1.9668 10 1 1.1657 3.1826 2.0792 11 1 2.8433 4.6842 2.9800 12 1 2.8143 4.1815 0.6079 13 6 4.2371 1.4425 -1.2697 14 6 4.5606 0.0023 -1.6720 15 7 5.3816 0.0068 -2.8854 16 6 5.7902 -1.1577 -3.4269 17 8 5.4785 -2.2102 -2.9091 18 6 6.6275 -1.1531 -4.6636 19 8 6.9396 -0.1005 -5.1812 20 7 7.0365 -2.3176 -5.2048 21 6 7.8924 -2.3123 -6.3092 22 6 9.0844 -1.6001 -6.2628 23 6 9.4561 -0.8314 -5.0210 24 6 9.9256 -1.5926 -7.3580 25 6 9.5879 -2.3023 -8.4960 26 6 8.4049 -3.0169 -8.5436 27 6 7.5566 -3.0244 -7.4539 28 6 6.2679 -3.8039 -7.5065 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.7407 2.3775 4.2378 37 1 5.1638 2.0046 -1.1545 38 1 3.6243 1.9066 -2.0425 39 1 3.6339 -0.5388 -1.8623 40 1 5.1074 -0.4861 -0.8652 41 1 5.6316 0.8480 -3.2986 42 1 6.7367 -3.1596 -4.8277 43 1 9.1637 0.2120 -5.1384 44 1 8.9402 -1.2588 -4.1612 45 1 10.5333 -0.8917 -4.8652 46 1 10.8502 -1.0356 -7.3243 47 1 10.2494 -2.2981 -9.3496 48 1 8.1444 -3.5703 -9.4337 49 1 6.4419 -4.8182 -7.1475 50 1 5.5234 -3.3179 -6.8758 51 1 5.9062 -3.8391 -8.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753150476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:27 Heat of formation + Delta-G solvation = -26.089308 kcal Electronic energy + Delta-G solvation = -30365.720538 eV Core-core repulsion = 26265.742440 eV Total energy + Delta-G solvation = -4099.978097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.32728 -39.70443 -38.28268 -36.88180 -35.45302 -34.46675 -33.83907 -32.60954 -31.56020 -31.08850 -28.82702 -27.65436 -26.94061 -25.69232 -25.18214 -23.34796 -21.74130 -21.32679 -21.01739 -20.74011 -20.16582 -18.81071 -17.61992 -16.88589 -16.56066 -16.43989 -15.70649 -15.48031 -15.39568 -15.22523 -14.44037 -14.29266 -14.22055 -14.18743 -13.91891 -13.69895 -13.39471 -13.26203 -13.12160 -13.03199 -12.94215 -12.71452 -12.22829 -12.17683 -11.93390 -11.72627 -11.66265 -11.56620 -11.49218 -11.45357 -11.20452 -10.86280 -10.76944 -10.37462 -10.32878 -10.21115 -9.75381 -9.70159 -9.52017 -8.97188 -8.85650 -8.60125 -8.55909 -6.95163 -6.05890 -3.50119 0.85040 1.06038 1.42892 2.26255 3.13011 3.27390 3.41818 3.43213 3.47765 3.55881 4.36727 4.45303 4.47546 4.50143 4.67131 4.94537 4.95030 5.05929 5.13865 5.20729 5.27089 5.29080 5.44627 5.51572 5.53593 5.54194 5.56632 5.69263 5.76826 5.77169 5.96383 5.98041 6.02255 6.04027 6.09076 6.12657 6.21479 6.26295 6.29463 6.40383 6.44725 6.47793 6.53189 6.63549 6.71865 6.84590 6.89643 7.06853 7.32816 7.65473 7.97025 8.00039 8.31149 8.90114 9.63389 10.01645 11.09063 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002122 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.494747 B =13193.405751 C =14036.216162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.134 3.866 4 N -0.599 5.599 5 C -0.275 4.275 6 H 0.079 0.921 7 C 0.040 3.960 8 N -0.895 5.895 9 Si 0.879 3.121 10 H -0.284 1.284 11 H -0.301 1.301 12 H -0.270 1.270 13 C 0.139 3.861 14 C 0.092 3.908 15 N -0.687 5.687 16 C 0.503 3.497 17 O -0.522 6.522 18 C 0.508 3.492 19 O -0.499 6.499 20 N -0.650 5.650 21 C 0.133 3.867 22 C -0.068 4.068 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.089 4.089 28 C -0.117 4.117 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.264 0.736 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.410 0.590 42 H 0.421 0.579 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -8.982 -23.421 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.320 5.320 5 C -0.404 4.404 6 H 0.097 0.903 7 C -0.161 4.161 8 N -0.535 5.535 9 Si 0.710 3.290 10 H -0.212 1.212 11 H -0.229 1.229 12 H -0.195 1.195 13 C 0.011 3.989 14 C -0.033 4.033 15 N -0.340 5.340 16 C 0.282 3.718 17 O -0.398 6.398 18 C 0.290 3.710 19 O -0.372 6.372 20 N -0.299 5.299 21 C 0.040 3.960 22 C -0.070 4.070 23 C -0.171 4.171 24 C -0.133 4.133 25 C -0.134 4.134 26 C -0.135 4.135 27 C -0.091 4.091 28 C -0.174 4.174 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.245 0.755 42 H 0.259 0.741 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.720 -8.870 -23.115 25.654 hybrid contribution -0.663 0.696 -0.019 0.961 sum 6.057 -8.174 -23.134 25.272 Atomic orbital electron populations 1.21748 0.97299 1.00670 1.01024 1.22107 0.93905 1.00055 1.02053 1.21309 0.84011 0.94485 0.99298 1.44013 1.00366 1.86044 1.01591 1.18711 1.09787 1.24721 0.87139 0.90334 1.25453 0.97888 0.97618 0.95138 1.69884 1.46446 1.39281 0.97891 0.86924 0.80203 0.84117 0.77806 1.21225 1.22949 1.19451 1.20993 0.97210 0.91856 0.88813 1.22624 0.94108 1.02326 0.84194 1.45904 1.51365 1.08133 1.28550 1.19801 0.81825 0.85300 0.84905 1.90786 1.56056 1.30748 1.62225 1.20476 0.80984 0.84113 0.85410 1.90777 1.54444 1.30582 1.61404 1.43054 1.47147 1.09758 1.29985 1.17262 0.90289 1.01117 0.87297 1.19916 0.92326 0.97838 0.96882 1.20905 1.01330 1.00706 0.94127 1.20899 0.99727 1.00018 0.92662 1.21143 0.96967 0.97226 0.98095 1.20858 0.94479 1.00351 0.97795 1.19880 0.97264 0.99735 0.92203 1.20780 0.93958 0.99446 1.03225 0.93551 0.93465 0.93116 0.92978 0.91267 0.92582 0.94387 0.92596 0.91992 0.93611 0.91373 0.90368 0.75471 0.74076 0.89518 0.92351 0.91529 0.85593 0.85787 0.85633 0.90788 0.91422 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.14 -2.63 6.26 -26.73 -0.17 -2.80 16 3 C 0.13 2.78 4.55 -4.04 -0.02 2.76 16 4 N -0.60 -13.34 2.07 -173.24 -0.36 -13.70 16 5 C -0.28 -7.34 9.91 -15.06 -0.15 -7.49 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 7 C 0.04 1.13 5.29 -17.42 -0.09 1.03 16 8 N -0.89 -26.63 13.97 55.49 0.78 -25.86 16 9 Si 0.88 21.62 25.16 -169.99 -4.28 17.34 16 10 H -0.28 -6.79 6.60 56.52 0.37 -6.42 16 11 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.14 2.50 5.83 -4.04 -0.02 2.48 16 14 C 0.09 1.55 5.99 -4.04 -0.02 1.52 16 15 N -0.69 -9.77 5.55 -60.76 -0.34 -10.10 16 16 C 0.50 7.29 7.89 -11.63 -0.09 7.20 16 17 O -0.52 -8.75 16.48 5.49 0.09 -8.65 16 18 C 0.51 6.57 6.07 -11.63 -0.07 6.50 16 19 O -0.50 -7.11 13.70 5.48 0.08 -7.03 16 20 N -0.65 -7.15 3.85 -10.29 -0.04 -7.19 16 21 C 0.13 1.45 5.81 -83.75 -0.49 0.96 16 22 C -0.07 -0.73 5.49 -104.42 -0.57 -1.30 16 23 C -0.11 -1.22 8.26 36.00 0.30 -0.92 16 24 C -0.11 -1.03 9.72 -39.61 -0.39 -1.41 16 25 C -0.12 -0.91 10.04 -39.54 -0.40 -1.31 16 26 C -0.12 -0.93 9.69 -39.62 -0.38 -1.31 16 27 C -0.09 -0.82 5.90 -104.42 -0.62 -1.44 16 28 C -0.12 -0.85 9.69 36.00 0.35 -0.50 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.91 6.61 -51.93 -0.34 0.57 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.06 1.29 3.31 -51.93 -0.17 1.12 16 35 H 0.04 0.70 7.87 -51.93 -0.41 0.30 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 37 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 38 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 39 H 0.07 1.17 6.61 -51.93 -0.34 0.83 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.41 5.12 7.94 -40.82 -0.32 4.80 16 42 H 0.42 4.10 8.18 -40.82 -0.33 3.76 16 43 H 0.09 1.01 7.07 -51.93 -0.37 0.65 16 44 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 45 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.55 7.46 -51.93 -0.39 0.16 16 51 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 LS Contribution 410.80 15.07 6.19 6.19 Total: -1.00 -31.56 410.80 -8.41 -39.97 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.07 Total: 7.03 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.46 Total: 2.00 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.04 Total: -56.85 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.17 Total: -15.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.28 Total: 17.34 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.56 -8.41 -39.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753150476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.882 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds