Wall clock time and date at job start Wed Apr 1 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46984 * 2 1 4 4 N 1.46501 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.36930 * 120.00227 * 269.99789 * 4 3 2 6 6 H 1.08007 * 120.00570 * 142.03453 * 5 4 3 7 7 C 1.38816 * 119.99729 * 322.03527 * 5 4 3 8 8 N 1.31629 * 119.99704 * 157.22435 * 7 5 4 9 9 Si 1.86795 * 120.00153 * 337.22632 * 7 5 4 10 10 H 1.48498 * 109.46974 * 93.84846 * 9 7 5 11 11 H 1.48499 * 109.46965 * 213.84779 * 9 7 5 12 12 H 1.48494 * 109.46979 * 333.84774 * 9 7 5 13 13 C 1.46507 * 120.00047 * 89.99517 * 4 3 2 14 14 C 1.52995 * 109.47337 * 266.84531 * 13 4 3 15 15 N 1.46505 * 109.47235 * 184.35561 * 14 13 4 16 16 C 1.34772 * 119.99878 * 179.97438 * 15 14 13 17 17 O 1.21361 * 120.00419 * 359.97438 * 16 15 14 18 18 C 1.49355 * 119.99867 * 180.02562 * 16 15 14 19 19 O 1.21371 * 119.99741 * 359.97438 * 18 16 15 20 20 N 1.34772 * 119.99867 * 179.97438 * 18 16 15 21 21 C 1.39722 * 119.99963 * 184.24380 * 20 18 16 22 22 C 1.38932 * 120.07531 * 53.42934 * 21 20 18 23 23 C 1.50697 * 120.03833 * 359.97438 * 22 21 20 24 24 C 1.38099 * 119.92379 * 180.25637 * 22 21 20 25 25 C 1.38301 * 120.07326 * 359.44671 * 24 22 21 26 26 C 1.38287 * 120.15362 * 0.28086 * 25 24 22 27 27 C 1.38095 * 120.07907 * 359.97438 * 26 25 24 28 28 C 1.50699 * 120.04108 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.46996 * 60.00013 * 1 2 3 30 30 H 1.08995 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46571 * 300.00485 * 1 2 3 32 32 H 1.09000 * 109.46571 * 239.99515 * 2 1 3 33 33 H 1.08999 * 109.46624 * 119.99619 * 2 1 3 34 34 H 1.08994 * 109.47855 * 59.99867 * 3 2 1 35 35 H 1.08999 * 109.47129 * 299.99310 * 3 2 1 36 36 H 0.96993 * 119.99460 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46979 * 146.84171 * 13 4 3 38 38 H 1.09000 * 109.46957 * 26.84287 * 13 4 3 39 39 H 1.08993 * 109.47524 * 64.35079 * 14 13 4 40 40 H 1.09006 * 109.46745 * 304.35236 * 14 13 4 41 41 H 0.96995 * 119.99609 * 0.02562 * 15 14 13 42 42 H 0.97003 * 120.00563 * 4.24865 * 20 18 16 43 43 H 1.09000 * 109.47120 * 263.66365 * 23 22 21 44 44 H 1.08996 * 109.47109 * 23.66461 * 23 22 21 45 45 H 1.09005 * 109.46793 * 143.66174 * 23 22 21 46 46 H 1.07995 * 119.96591 * 179.72614 * 24 22 21 47 47 H 1.07995 * 119.92094 * 180.25563 * 25 24 22 48 48 H 1.08002 * 119.96388 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47206 * 90.00095 * 28 27 26 50 50 H 1.09004 * 109.46726 * 210.00426 * 28 27 26 51 51 H 1.09002 * 109.47085 * 329.99630 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1903 1.4423 1.1849 6 1 5.0990 0.8669 1.2835 7 6 3.7169 2.1818 2.2602 8 7 4.0717 1.8610 3.4865 9 14 2.5766 3.6319 1.9668 10 1 1.1657 3.1826 2.0792 11 1 2.8433 4.6842 2.9800 12 1 2.8143 4.1815 0.6079 13 6 4.2371 1.4425 -1.2697 14 6 4.5606 0.0023 -1.6720 15 7 5.3816 0.0068 -2.8854 16 6 5.7902 -1.1577 -3.4269 17 8 5.4785 -2.2102 -2.9091 18 6 6.6275 -1.1531 -4.6636 19 8 6.9396 -0.1005 -5.1812 20 7 7.0365 -2.3176 -5.2048 21 6 7.8924 -2.3123 -6.3092 22 6 9.0844 -1.6001 -6.2628 23 6 9.4561 -0.8314 -5.0210 24 6 9.9256 -1.5926 -7.3580 25 6 9.5879 -2.3023 -8.4960 26 6 8.4049 -3.0169 -8.5436 27 6 7.5566 -3.0244 -7.4539 28 6 6.2679 -3.8039 -7.5065 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.7407 2.3775 4.2378 37 1 5.1638 2.0046 -1.1545 38 1 3.6243 1.9066 -2.0425 39 1 3.6339 -0.5388 -1.8623 40 1 5.1074 -0.4861 -0.8652 41 1 5.6316 0.8480 -3.2986 42 1 6.7367 -3.1596 -4.8277 43 1 9.1637 0.2120 -5.1384 44 1 8.9402 -1.2588 -4.1612 45 1 10.5333 -0.8917 -4.8652 46 1 10.8502 -1.0356 -7.3243 47 1 10.2494 -2.2981 -9.3496 48 1 8.1444 -3.5703 -9.4337 49 1 6.4419 -4.8182 -7.1475 50 1 5.5234 -3.3179 -6.8758 51 1 5.9062 -3.8391 -8.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753150476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:26 Heat of formation + Delta-G solvation = -45.933006 kcal Electronic energy + Delta-G solvation = -30366.581025 eV Core-core repulsion = 26265.742440 eV Total energy + Delta-G solvation = -4100.838585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.29108 -40.70000 -39.30490 -38.51376 -36.53406 -35.63281 -34.53225 -34.34903 -33.33876 -31.82565 -30.31531 -28.47098 -27.58623 -27.37284 -26.45537 -24.73556 -22.76124 -22.46883 -22.28074 -22.04981 -21.21099 -19.92251 -18.75097 -18.51529 -17.68403 -17.47200 -17.34683 -16.59798 -16.52563 -16.13297 -15.91566 -15.71622 -15.32655 -15.13497 -14.90752 -14.79317 -14.71866 -14.48772 -14.35697 -14.08535 -13.98978 -13.89501 -13.63801 -13.25006 -13.06658 -12.91504 -12.87675 -12.83608 -12.54795 -12.50222 -12.30832 -12.23028 -12.17655 -11.98906 -11.81893 -11.66886 -11.24229 -11.18769 -10.85059 -10.59017 -10.30228 -9.52526 -9.35040 -8.83149 -8.20247 -5.61030 -0.00351 0.38795 0.46099 1.19928 1.32682 1.43289 1.54231 2.01746 2.42661 2.49085 2.73764 3.03397 3.25022 3.50212 3.76867 3.85296 4.07233 4.08861 4.11608 4.24913 4.34437 4.37738 4.40951 4.42636 4.50716 4.56680 4.58192 4.68986 4.73064 4.76182 4.81213 4.84790 4.90771 4.95172 4.99333 5.09917 5.10249 5.18944 5.20828 5.27125 5.29037 5.39738 5.40626 5.54296 5.54364 5.58003 5.81245 5.94508 6.04535 6.17707 6.23085 6.64708 6.83891 6.97626 7.60783 8.01165 8.99081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002122 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.494747 B =13193.405751 C =14036.216162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.127 3.873 4 N -0.610 5.610 5 C -0.259 4.259 6 H 0.039 0.961 7 C -0.018 4.018 8 N -0.947 5.947 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.312 1.312 12 H -0.254 1.254 13 C 0.139 3.861 14 C 0.111 3.889 15 N -0.679 5.679 16 C 0.505 3.495 17 O -0.546 6.546 18 C 0.515 3.485 19 O -0.514 6.514 20 N -0.637 5.637 21 C 0.105 3.895 22 C -0.090 4.090 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.095 4.095 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.263 0.737 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.420 0.580 42 H 0.425 0.575 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.142 0.858 47 H 0.153 0.847 48 H 0.153 0.847 49 H 0.086 0.914 50 H 0.055 0.945 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -8.935 -27.265 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.003 3.997 4 N -0.333 5.333 5 C -0.389 4.389 6 H 0.056 0.944 7 C -0.215 4.215 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.241 1.241 12 H -0.178 1.178 13 C 0.013 3.987 14 C -0.014 4.014 15 N -0.332 5.332 16 C 0.285 3.715 17 O -0.424 6.424 18 C 0.297 3.703 19 O -0.388 6.388 20 N -0.286 5.286 21 C 0.013 3.987 22 C -0.091 4.091 23 C -0.166 4.166 24 C -0.141 4.141 25 C -0.130 4.130 26 C -0.136 4.136 27 C -0.097 4.097 28 C -0.173 4.173 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.258 0.742 42 H 0.264 0.736 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.160 0.840 47 H 0.170 0.830 48 H 0.170 0.830 49 H 0.104 0.896 50 H 0.074 0.926 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.900 -8.837 -27.029 29.043 hybrid contribution -0.291 0.536 1.054 1.218 sum 5.608 -8.301 -25.976 27.840 Atomic orbital electron populations 1.21704 0.94570 1.02074 1.01824 1.21992 0.96285 0.98423 1.00798 1.21450 0.82778 0.95782 0.99728 1.44104 1.01334 1.86288 1.01551 1.18546 1.08449 1.22949 0.88951 0.94353 1.26086 1.00450 1.00220 0.94728 1.70021 1.49318 1.40800 0.98894 0.85853 0.78764 0.80150 0.77880 1.19977 1.24051 1.17772 1.21108 0.97399 0.92466 0.87748 1.22162 0.93856 1.01223 0.84180 1.45713 1.51008 1.08798 1.27702 1.20095 0.81435 0.84783 0.85200 1.90773 1.56987 1.31600 1.63073 1.20041 0.80865 0.84584 0.84805 1.90771 1.55230 1.31111 1.61721 1.42939 1.46531 1.09219 1.29880 1.17527 0.90604 1.02767 0.87804 1.20085 0.93080 0.98489 0.97495 1.20830 1.02127 0.99786 0.93892 1.21170 1.00087 1.00331 0.92516 1.21530 0.97174 0.95914 0.98405 1.21240 0.94132 1.00058 0.98170 1.20163 0.98225 0.99401 0.91938 1.20817 0.92779 0.99644 1.04049 0.91158 0.91870 0.93852 0.91886 0.94902 0.94766 0.91020 0.92829 0.92254 0.90079 0.91336 0.93786 0.74210 0.73578 0.90866 0.93951 0.89973 0.83989 0.82956 0.82968 0.89560 0.92626 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.91 71.99 0.71 -3.39 16 2 C -0.14 -4.87 6.26 30.60 0.19 -4.68 16 3 C 0.13 5.02 4.55 86.38 0.39 5.41 16 4 N -0.61 -26.91 2.07 -702.01 -1.45 -28.37 16 5 C -0.26 -14.24 9.91 84.04 0.83 -13.41 16 6 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 7 C -0.02 -1.03 5.29 84.86 0.45 -0.58 16 8 N -0.95 -58.69 13.97 21.65 0.30 -58.39 16 9 Si 0.95 44.99 25.16 68.60 1.73 46.71 16 10 H -0.27 -12.35 6.60 99.48 0.66 -11.69 16 11 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 12 H -0.25 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.14 4.84 5.83 86.38 0.50 5.34 16 14 C 0.11 3.73 5.99 86.38 0.52 4.25 16 15 N -0.68 -19.06 5.55 -464.51 -2.58 -21.63 16 16 C 0.50 14.70 7.89 87.24 0.69 15.39 16 17 O -0.55 -18.57 16.48 -3.28 -0.05 -18.63 16 18 C 0.52 13.33 6.07 87.24 0.53 13.86 16 19 O -0.51 -14.56 13.70 -3.31 -0.05 -14.61 16 20 N -0.64 -13.97 3.85 -304.84 -1.18 -15.14 16 21 C 0.11 2.21 5.81 38.22 0.22 2.43 16 22 C -0.09 -1.88 5.49 -19.73 -0.11 -1.98 16 23 C -0.11 -2.36 8.26 71.24 0.59 -1.77 16 24 C -0.12 -1.98 9.72 22.25 0.22 -1.76 16 25 C -0.11 -1.43 10.04 22.30 0.22 -1.21 16 26 C -0.12 -1.54 9.69 22.25 0.22 -1.33 16 27 C -0.10 -1.59 5.90 -19.73 -0.12 -1.71 16 28 C -0.12 -1.47 9.69 71.24 0.69 -0.78 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 2.11 6.61 -2.39 -0.02 2.09 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.03 1.52 3.31 -2.39 -0.01 1.51 16 35 H 0.07 2.37 7.87 -2.39 -0.02 2.35 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 38 H 0.08 2.31 7.85 -2.39 -0.02 2.29 16 39 H 0.07 2.31 6.61 -2.39 -0.02 2.29 16 40 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.42 10.12 7.94 -92.71 -0.74 9.38 16 42 H 0.42 8.32 8.18 -92.71 -0.76 7.56 16 43 H 0.07 1.74 7.07 -2.39 -0.02 1.73 16 44 H 0.04 1.01 6.31 -2.39 -0.02 1.00 16 45 H 0.08 1.42 8.13 -2.38 -0.02 1.40 16 46 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 47 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 48 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 49 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.05 0.84 7.46 -2.38 -0.02 0.82 16 51 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16 Total: -1.00 -71.02 410.80 2.88 -68.13 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.59 Total: 27.85 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.75 Total: 14.07 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -4.90 Total: -123.53 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.10 Total: -33.24 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.73 Total: 46.71 kcal Total: -71.02 2.88 -68.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753150476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.200 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds