Wall clock time and date at job start Wed Apr 1 2020 04:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47231 * 257.41877 * 3 2 1 5 5 C 1.34777 * 120.00290 * 270.00515 * 4 3 2 6 6 O 1.21279 * 120.00328 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99776 * 359.97438 * 5 4 3 8 8 C 1.53004 * 109.47014 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.46968 * 180.02562 * 8 7 5 10 10 C 1.46761 * 124.34972 * 269.72520 * 9 8 7 11 11 C 1.54654 * 105.38299 * 162.85639 * 10 9 8 12 12 C 1.54621 * 101.68523 * 25.76575 * 11 10 9 13 13 C 1.34416 * 124.35034 * 90.02006 * 9 8 7 14 14 O 1.21286 * 124.94272 * 0.43563 * 13 9 8 15 15 C 1.46504 * 119.99980 * 90.00252 * 4 3 2 16 16 C 1.53081 * 109.43848 * 299.79571 * 15 4 3 17 17 C 1.53190 * 109.29209 * 181.23616 * 16 15 4 18 18 N 1.46921 * 108.89311 * 305.57883 * 17 16 15 19 19 C 1.36940 * 120.63187 * 233.51481 * 18 17 16 20 20 H 1.08001 * 120.00319 * 152.61971 * 19 18 17 21 21 C 1.38813 * 119.99903 * 332.62203 * 19 18 17 22 22 N 1.31624 * 120.00070 * 159.34992 * 21 19 18 23 23 Si 1.86800 * 120.00077 * 339.35529 * 21 19 18 24 24 H 1.48494 * 109.47321 * 92.87851 * 23 21 19 25 25 H 1.48501 * 109.47194 * 212.88430 * 23 21 19 26 26 H 1.48509 * 109.46983 * 332.87654 * 23 21 19 27 27 C 1.46923 * 118.74178 * 53.54201 * 18 17 16 28 28 C 1.53035 * 109.45960 * 59.99966 * 15 4 3 29 29 H 4.40644 * 5.51532 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46759 * 137.42381 * 3 2 1 31 31 H 1.08993 * 109.47096 * 17.42253 * 3 2 1 32 32 H 1.09007 * 109.47134 * 300.00098 * 7 5 4 33 33 H 1.08995 * 109.47349 * 60.00416 * 7 5 4 34 34 H 1.08999 * 109.46820 * 299.99470 * 8 7 5 35 35 H 1.08995 * 109.47074 * 59.99817 * 8 7 5 36 36 H 1.09000 * 110.24136 * 281.98792 * 10 9 8 37 37 H 1.09001 * 110.24535 * 43.97745 * 10 9 8 38 38 H 1.09004 * 111.19130 * 267.58622 * 11 10 9 39 39 H 1.09007 * 110.82179 * 143.77950 * 11 10 9 40 40 H 1.09006 * 110.48147 * 216.31153 * 12 11 10 41 41 H 1.08994 * 110.59850 * 93.72669 * 12 11 10 42 42 H 1.08998 * 109.46073 * 179.97438 * 15 4 3 43 43 H 1.08992 * 109.38800 * 61.36034 * 16 15 4 44 44 H 1.09002 * 109.61927 * 301.25313 * 16 15 4 45 45 H 1.08999 * 109.58729 * 185.71870 * 17 16 15 46 46 H 1.09004 * 109.58886 * 65.43758 * 17 16 15 47 47 H 0.97001 * 119.99914 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.59094 * 66.17180 * 27 18 17 49 49 H 1.09001 * 109.59077 * 186.46452 * 27 18 17 50 50 H 1.09002 * 109.49848 * 58.67960 * 28 15 4 51 51 H 1.09002 * 109.52425 * 298.59433 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3017 1.3480 5 6 3.3582 1.5794 1.7140 6 8 3.7619 1.8287 2.8301 7 6 3.1069 2.6983 0.7362 8 6 3.4382 4.0376 1.3977 9 7 3.1933 5.1254 0.4473 10 6 4.1989 5.6564 -0.4804 11 6 3.3994 6.4411 -1.5467 12 6 2.1232 6.8241 -0.7623 13 6 2.0205 5.7690 0.3170 14 8 1.0250 5.5380 0.9701 15 6 3.3789 -0.7860 2.2984 16 6 2.0760 -1.5516 2.5430 17 6 2.3287 -2.6686 3.5604 18 7 3.4415 -3.5020 3.0854 19 6 3.2972 -4.8589 2.9698 20 1 3.8869 -5.4053 2.2486 21 6 2.3928 -5.5321 3.7797 22 7 1.9481 -6.7190 3.4245 23 14 1.8068 -4.7537 5.3734 24 1 0.5508 -4.0017 5.1245 25 1 1.5566 -5.8159 6.3805 26 1 2.8475 -3.8244 5.8824 27 6 4.7124 -2.8522 2.7372 28 6 4.4342 -1.7352 1.7262 29 1 -1.0501 0.0002 -0.0001 30 1 3.0089 0.7576 -0.6953 31 1 3.0097 -0.9796 -0.3077 32 1 3.7375 2.5615 -0.1424 33 1 2.0591 2.6902 0.4362 34 1 2.8078 4.1746 2.2763 35 1 4.4861 4.0454 1.6974 36 1 4.8840 6.3210 0.0460 37 1 4.7491 4.8400 -0.9481 38 1 3.1573 5.8094 -2.4015 39 1 3.9446 7.3305 -1.8630 40 1 1.2501 6.7894 -1.4140 41 1 2.2282 7.8143 -0.3192 42 1 3.7363 -0.3713 3.2409 43 1 1.7297 -1.9854 1.6050 44 1 1.3186 -0.8705 2.9310 45 1 1.4320 -3.2798 3.6623 46 1 2.5852 -2.2324 4.5259 47 1 1.3159 -7.1892 3.9903 48 1 5.1642 -2.4288 3.6343 49 1 5.3893 -3.5850 2.2980 50 1 5.3536 -1.1827 1.5323 51 1 4.0676 -2.1694 0.7961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754643039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:38 Heat of formation + Delta-G solvation = 18.545958 kcal Electronic energy + Delta-G solvation = -31249.315506 eV Core-core repulsion = 27151.272939 eV Total energy + Delta-G solvation = -4098.042567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.82589 -40.16865 -37.83207 -36.73612 -35.85445 -34.19409 -33.11442 -32.18791 -30.87522 -30.41254 -29.77045 -27.97711 -27.25786 -25.57515 -24.12956 -22.84796 -22.35162 -21.80440 -19.86329 -19.62196 -19.53895 -18.03423 -17.57453 -17.07930 -16.87812 -16.47308 -16.05864 -15.97672 -15.44245 -15.04686 -14.38446 -14.22253 -14.17466 -14.10708 -13.78334 -13.68495 -13.55145 -13.37795 -13.33654 -13.05433 -12.92922 -12.80820 -12.40527 -12.31387 -12.00125 -11.96344 -11.80414 -11.52512 -11.41789 -11.09732 -10.88712 -10.62586 -10.48786 -10.24774 -10.18866 -10.12355 -10.09011 -9.86409 -9.69522 -9.48183 -9.10988 -8.72000 -8.60621 -6.99789 -5.95424 -3.31356 2.22685 2.36991 2.55882 2.64573 2.80427 3.33979 3.35002 3.50237 3.53880 3.92428 3.99650 4.31338 4.32439 4.45996 4.53600 4.57098 4.63430 4.69703 4.93423 4.97341 5.00027 5.04169 5.17260 5.18026 5.20908 5.26547 5.30576 5.36559 5.42591 5.46736 5.48780 5.65995 5.66371 5.80817 5.89390 6.01330 6.03464 6.15305 6.17400 6.29342 6.40824 6.57809 6.62318 6.66536 6.67583 6.76247 6.88893 7.34905 7.58157 7.83638 7.95158 8.09636 8.31907 8.92904 9.71572 10.09027 11.20366 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020972 B = 0.002385 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.763864 B =11737.965137 C =11900.463467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.211 4.211 3 C 0.217 3.783 4 N -0.601 5.601 5 C 0.521 3.479 6 O -0.538 6.538 7 C -0.158 4.158 8 C 0.142 3.858 9 N -0.621 5.621 10 C 0.099 3.901 11 C -0.132 4.132 12 C -0.156 4.156 13 C 0.513 3.487 14 O -0.528 6.528 15 C 0.144 3.856 16 C -0.137 4.137 17 C 0.129 3.871 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.024 3.976 22 N -0.908 5.908 23 Si 0.881 3.119 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.270 1.270 27 C 0.151 3.849 28 C -0.140 4.140 29 H 0.216 0.784 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.026 0.974 47 H 0.262 0.738 48 H 0.025 0.975 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 26.588 -14.143 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.212 4.212 3 C 0.095 3.905 4 N -0.332 5.332 5 C 0.309 3.691 6 O -0.416 6.416 7 C -0.199 4.199 8 C 0.020 3.980 9 N -0.356 5.356 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.301 3.699 14 O -0.404 6.404 15 C 0.042 3.958 16 C -0.177 4.177 17 C 0.002 3.998 18 N -0.329 5.329 19 C -0.388 4.388 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.551 5.551 23 Si 0.711 3.289 24 H -0.217 1.217 25 H -0.231 1.231 26 H -0.195 1.195 27 C 0.025 3.975 28 C -0.180 4.180 29 H 0.233 0.767 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.043 0.957 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.397 26.371 -13.087 29.767 hybrid contribution -0.764 0.198 0.757 1.094 sum 3.633 26.569 -12.330 29.516 Atomic orbital electron populations 1.24958 0.95969 1.00319 0.98423 1.23444 0.94871 1.01068 1.01794 1.18392 0.83947 1.03811 0.84396 1.48236 1.64673 1.06496 1.13828 1.20426 0.76992 0.83449 0.88255 1.90708 1.45959 1.83272 1.21616 1.22080 1.04596 0.93935 0.99274 1.21094 1.03148 0.82908 0.90865 1.48359 1.12626 1.35548 1.39026 1.22163 0.91303 0.98394 0.90508 1.22633 0.95622 1.01120 0.97601 1.22341 1.00370 0.99368 0.97542 1.20990 0.82502 0.82421 0.84013 1.90765 1.32545 1.68048 1.49046 1.21210 0.96259 0.85695 0.92610 1.22371 0.95844 0.97841 1.01630 1.21320 0.92519 0.91743 0.94168 1.44390 1.07074 1.03771 1.77703 1.18901 1.22987 0.80952 1.15931 0.89635 1.25275 0.98596 0.95405 0.98240 1.69836 1.32422 1.15000 1.37818 0.86985 0.78502 0.77864 0.85529 1.21656 1.23106 1.19462 1.20880 0.88644 0.93118 0.94896 1.22386 0.97448 0.97421 1.00748 0.76709 0.88506 0.87328 0.88700 0.88474 0.89070 0.89279 0.90798 0.90171 0.89820 0.89086 0.88029 0.87807 0.88340 0.91330 0.92721 0.90688 0.95564 0.92771 0.95697 0.91407 0.92250 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 19.25 29.55 0.57 -1.63 16 2 C -0.21 -2.69 11.92 -37.12 -0.44 -3.13 16 3 C 0.22 2.40 5.16 -6.83 -0.04 2.37 16 4 N -0.60 -8.18 2.37 -169.35 -0.40 -8.58 16 5 C 0.52 7.15 7.67 -10.98 -0.08 7.06 16 6 O -0.54 -9.24 15.31 5.56 0.09 -9.16 16 7 C -0.16 -1.58 4.58 -27.88 -0.13 -1.70 16 8 C 0.14 1.43 5.22 -4.04 -0.02 1.41 16 9 N -0.62 -5.18 2.93 -172.30 -0.51 -5.69 16 10 C 0.10 0.43 7.35 -3.03 -0.02 0.41 16 11 C -0.13 -0.39 7.19 -25.01 -0.18 -0.57 16 12 C -0.16 -0.85 6.86 -26.75 -0.18 -1.04 16 13 C 0.51 5.25 8.02 -10.86 -0.09 5.16 16 14 O -0.53 -8.01 17.59 5.55 0.10 -7.92 16 15 C 0.14 2.37 2.48 -67.87 -0.17 2.20 16 16 C -0.14 -2.55 4.75 -26.59 -0.13 -2.68 16 17 C 0.13 2.89 4.20 -3.71 -0.02 2.87 16 18 N -0.61 -14.34 2.77 -172.32 -0.48 -14.82 16 19 C -0.26 -7.21 10.03 -15.06 -0.15 -7.36 16 20 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 22 N -0.91 -27.87 13.97 55.49 0.78 -27.10 16 23 Si 0.88 22.80 24.34 -169.99 -4.14 18.66 16 24 H -0.29 -7.27 6.62 56.52 0.37 -6.90 16 25 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.27 -6.90 6.64 56.52 0.38 -6.53 16 27 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 28 C -0.14 -2.21 5.31 -26.61 -0.14 -2.35 16 29 H 0.22 2.02 7.80 -54.08 -0.42 1.60 16 30 H 0.10 0.75 6.44 -51.93 -0.33 0.42 16 31 H 0.11 1.19 6.45 -51.93 -0.34 0.85 16 32 H 0.09 0.67 7.40 -51.93 -0.38 0.29 16 33 H 0.10 1.08 7.95 -51.93 -0.41 0.66 16 34 H 0.09 1.17 7.88 -51.93 -0.41 0.77 16 35 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.10 8.14 -51.92 -0.42 -0.32 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 1.82 6.90 -51.93 -0.36 1.46 16 43 H 0.07 1.31 7.01 -51.93 -0.36 0.94 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.84 4.50 -51.93 -0.23 1.61 16 46 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.07 1.03 6.72 -51.93 -0.35 0.68 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -36.46 403.19 -8.04 -44.50 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.22 Total: -0.51 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.33 Total: 4.52 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.61 Total: -56.18 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.18 Total: -17.07 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.14 Total: 18.66 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.46 -8.04 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754643039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.050 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds