Wall clock time and date at job start Wed Apr 1 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47231 * 257.41877 * 3 2 1 5 5 C 1.34777 * 120.00290 * 270.00515 * 4 3 2 6 6 O 1.21279 * 120.00328 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99776 * 359.97438 * 5 4 3 8 8 C 1.53004 * 109.47014 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.46968 * 180.02562 * 8 7 5 10 10 C 1.46761 * 124.34972 * 269.72520 * 9 8 7 11 11 C 1.54654 * 105.38299 * 162.85639 * 10 9 8 12 12 C 1.54621 * 101.68523 * 25.76575 * 11 10 9 13 13 C 1.34416 * 124.35034 * 90.02006 * 9 8 7 14 14 O 1.21286 * 124.94272 * 0.43563 * 13 9 8 15 15 C 1.46504 * 119.99980 * 90.00252 * 4 3 2 16 16 C 1.53081 * 109.43848 * 299.79571 * 15 4 3 17 17 C 1.53190 * 109.29209 * 181.23616 * 16 15 4 18 18 N 1.46921 * 108.89311 * 305.57883 * 17 16 15 19 19 C 1.36940 * 120.63187 * 233.51481 * 18 17 16 20 20 H 1.08001 * 120.00319 * 152.61971 * 19 18 17 21 21 C 1.38813 * 119.99903 * 332.62203 * 19 18 17 22 22 N 1.31624 * 120.00070 * 159.34992 * 21 19 18 23 23 Si 1.86800 * 120.00077 * 339.35529 * 21 19 18 24 24 H 1.48494 * 109.47321 * 92.87851 * 23 21 19 25 25 H 1.48501 * 109.47194 * 212.88430 * 23 21 19 26 26 H 1.48509 * 109.46983 * 332.87654 * 23 21 19 27 27 C 1.46923 * 118.74178 * 53.54201 * 18 17 16 28 28 C 1.53035 * 109.45960 * 59.99966 * 15 4 3 29 29 H 4.40644 * 5.51532 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46759 * 137.42381 * 3 2 1 31 31 H 1.08993 * 109.47096 * 17.42253 * 3 2 1 32 32 H 1.09007 * 109.47134 * 300.00098 * 7 5 4 33 33 H 1.08995 * 109.47349 * 60.00416 * 7 5 4 34 34 H 1.08999 * 109.46820 * 299.99470 * 8 7 5 35 35 H 1.08995 * 109.47074 * 59.99817 * 8 7 5 36 36 H 1.09000 * 110.24136 * 281.98792 * 10 9 8 37 37 H 1.09001 * 110.24535 * 43.97745 * 10 9 8 38 38 H 1.09004 * 111.19130 * 267.58622 * 11 10 9 39 39 H 1.09007 * 110.82179 * 143.77950 * 11 10 9 40 40 H 1.09006 * 110.48147 * 216.31153 * 12 11 10 41 41 H 1.08994 * 110.59850 * 93.72669 * 12 11 10 42 42 H 1.08998 * 109.46073 * 179.97438 * 15 4 3 43 43 H 1.08992 * 109.38800 * 61.36034 * 16 15 4 44 44 H 1.09002 * 109.61927 * 301.25313 * 16 15 4 45 45 H 1.08999 * 109.58729 * 185.71870 * 17 16 15 46 46 H 1.09004 * 109.58886 * 65.43758 * 17 16 15 47 47 H 0.97001 * 119.99914 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.59094 * 66.17180 * 27 18 17 49 49 H 1.09001 * 109.59077 * 186.46452 * 27 18 17 50 50 H 1.09002 * 109.49848 * 58.67960 * 28 15 4 51 51 H 1.09002 * 109.52425 * 298.59433 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3017 1.3480 5 6 3.3582 1.5794 1.7140 6 8 3.7619 1.8287 2.8301 7 6 3.1069 2.6983 0.7362 8 6 3.4382 4.0376 1.3977 9 7 3.1933 5.1254 0.4473 10 6 4.1989 5.6564 -0.4804 11 6 3.3994 6.4411 -1.5467 12 6 2.1232 6.8241 -0.7623 13 6 2.0205 5.7690 0.3170 14 8 1.0250 5.5380 0.9701 15 6 3.3789 -0.7860 2.2984 16 6 2.0760 -1.5516 2.5430 17 6 2.3287 -2.6686 3.5604 18 7 3.4415 -3.5020 3.0854 19 6 3.2972 -4.8589 2.9698 20 1 3.8869 -5.4053 2.2486 21 6 2.3928 -5.5321 3.7797 22 7 1.9481 -6.7190 3.4245 23 14 1.8068 -4.7537 5.3734 24 1 0.5508 -4.0017 5.1245 25 1 1.5566 -5.8159 6.3805 26 1 2.8475 -3.8244 5.8824 27 6 4.7124 -2.8522 2.7372 28 6 4.4342 -1.7352 1.7262 29 1 -1.0501 0.0002 -0.0001 30 1 3.0089 0.7576 -0.6953 31 1 3.0097 -0.9796 -0.3077 32 1 3.7375 2.5615 -0.1424 33 1 2.0591 2.6902 0.4362 34 1 2.8078 4.1746 2.2763 35 1 4.4861 4.0454 1.6974 36 1 4.8840 6.3210 0.0460 37 1 4.7491 4.8400 -0.9481 38 1 3.1573 5.8094 -2.4015 39 1 3.9446 7.3305 -1.8630 40 1 1.2501 6.7894 -1.4140 41 1 2.2282 7.8143 -0.3192 42 1 3.7363 -0.3713 3.2409 43 1 1.7297 -1.9854 1.6050 44 1 1.3186 -0.8705 2.9310 45 1 1.4320 -3.2798 3.6623 46 1 2.5852 -2.2324 4.5259 47 1 1.3159 -7.1892 3.9903 48 1 5.1642 -2.4288 3.6343 49 1 5.3893 -3.5850 2.2980 50 1 5.3536 -1.1827 1.5323 51 1 4.0676 -2.1694 0.7961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754643039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:37 Heat of formation + Delta-G solvation = -5.594273 kcal Electronic energy + Delta-G solvation = -31250.362305 eV Core-core repulsion = 27151.272939 eV Total energy + Delta-G solvation = -4099.089366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.66517 -41.13640 -39.31184 -37.50921 -37.15640 -35.04814 -34.49718 -33.60567 -32.33432 -31.99036 -30.74949 -28.42870 -28.27406 -27.07564 -25.35694 -24.44843 -23.42568 -22.69424 -21.10194 -20.84395 -20.35574 -19.11749 -18.76885 -18.46571 -17.78475 -17.40810 -17.10351 -16.90661 -16.86472 -16.17089 -15.99091 -15.41230 -15.22506 -15.19488 -14.88259 -14.71929 -14.69905 -14.46301 -14.30424 -14.18922 -14.03935 -13.96628 -13.83617 -13.49539 -13.30455 -13.09368 -12.70487 -12.59706 -12.38957 -12.29654 -12.16227 -12.12213 -11.84697 -11.80980 -11.55676 -11.49847 -11.34988 -11.22462 -10.93194 -10.85590 -10.71655 -9.90993 -9.77838 -8.99586 -8.19494 -5.50581 1.25329 1.30413 1.36882 1.44954 1.50345 1.57759 1.86312 1.92976 2.36689 2.37706 3.01266 3.30036 3.43528 3.44827 3.51738 3.67242 3.75742 3.85854 3.91613 3.97235 4.10593 4.13346 4.19455 4.26842 4.27255 4.33462 4.39954 4.51158 4.62405 4.63291 4.69040 4.69694 4.76395 4.80536 4.87380 4.88074 4.92331 4.98929 5.04734 5.06102 5.11136 5.14529 5.27267 5.38897 5.43071 5.53562 5.84583 6.10651 6.13721 6.26752 6.64466 6.87534 7.01084 7.12650 7.58588 8.00149 9.00006 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020972 B = 0.002385 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.763864 B =11737.965137 C =11900.463467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.231 4.231 3 C 0.213 3.787 4 N -0.598 5.598 5 C 0.519 3.481 6 O -0.577 6.577 7 C -0.142 4.142 8 C 0.144 3.856 9 N -0.618 5.618 10 C 0.091 3.909 11 C -0.119 4.119 12 C -0.150 4.150 13 C 0.497 3.503 14 O -0.593 6.593 15 C 0.152 3.848 16 C -0.122 4.122 17 C 0.126 3.874 18 N -0.618 5.618 19 C -0.242 4.242 20 H 0.062 0.938 21 C -0.031 4.031 22 N -0.952 5.952 23 Si 0.936 3.064 24 H -0.282 1.282 25 H -0.309 1.309 26 H -0.266 1.266 27 C 0.144 3.856 28 C -0.124 4.124 29 H 0.234 0.766 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.025 0.975 47 H 0.261 0.739 48 H 0.030 0.970 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 29.489 -16.633 34.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.232 4.232 3 C 0.092 3.908 4 N -0.328 5.328 5 C 0.309 3.691 6 O -0.457 6.457 7 C -0.182 4.182 8 C 0.021 3.979 9 N -0.350 5.350 10 C -0.030 4.030 11 C -0.156 4.156 12 C -0.190 4.190 13 C 0.286 3.714 14 O -0.474 6.474 15 C 0.048 3.952 16 C -0.162 4.162 17 C 0.000 4.000 18 N -0.342 5.342 19 C -0.371 4.371 20 H 0.080 0.920 21 C -0.226 4.226 22 N -0.599 5.599 23 Si 0.766 3.234 24 H -0.209 1.209 25 H -0.237 1.237 26 H -0.190 1.190 27 C 0.019 3.981 28 C -0.164 4.164 29 H 0.251 0.749 30 H 0.156 0.844 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.194 29.332 -15.631 33.809 hybrid contribution -1.250 -0.656 1.488 2.051 sum 4.944 28.676 -14.143 32.354 Atomic orbital electron populations 1.25661 0.97016 1.00241 0.97962 1.23965 0.95790 1.01277 1.02192 1.18752 0.83056 1.05568 0.83439 1.48154 1.64560 1.05778 1.14347 1.21042 0.75884 0.83946 0.88260 1.90697 1.47741 1.83793 1.23464 1.22001 1.04789 0.92034 0.99425 1.20920 1.02855 0.83843 0.90315 1.48505 1.13192 1.34519 1.38821 1.22527 0.90718 0.99514 0.90229 1.22683 0.93875 1.02146 0.96898 1.22385 1.02186 0.98161 0.96285 1.21928 0.81989 0.83134 0.84299 1.90721 1.34912 1.70122 1.51636 1.20879 0.94938 0.86367 0.92967 1.22156 0.97272 0.96693 1.00118 1.21276 0.91171 0.92279 0.95293 1.44517 1.09167 1.02608 1.77944 1.18892 1.21195 0.82796 1.14242 0.91981 1.25809 0.99837 0.96053 1.00885 1.69940 1.34188 1.16746 1.38993 0.86084 0.78444 0.76861 0.82053 1.20885 1.23749 1.19050 1.21102 0.86774 0.94117 0.96116 1.22204 0.98595 0.96088 0.99479 0.74943 0.84441 0.86790 0.84553 0.89358 0.93013 0.88070 0.89520 0.88085 0.88845 0.86365 0.87597 0.86567 0.90199 0.91605 0.92770 0.93127 0.95747 0.92985 0.95171 0.91179 0.89160 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.45 19.25 74.32 1.43 -3.02 16 2 C -0.23 -5.46 11.92 31.13 0.37 -5.09 16 3 C 0.21 4.04 5.16 84.57 0.44 4.47 16 4 N -0.60 -14.86 2.37 -808.09 -1.91 -16.77 16 5 C 0.52 13.28 7.67 87.66 0.67 13.95 16 6 O -0.58 -19.44 15.31 -3.03 -0.05 -19.49 16 7 C -0.14 -2.48 4.58 29.85 0.14 -2.34 16 8 C 0.14 2.73 5.22 86.38 0.45 3.18 16 9 N -0.62 -9.09 2.93 -817.64 -2.40 -11.49 16 10 C 0.09 0.42 7.35 86.89 0.64 1.06 16 11 C -0.12 -0.19 7.19 31.71 0.23 0.04 16 12 C -0.15 -1.28 6.86 30.58 0.21 -1.07 16 13 C 0.50 9.79 8.02 87.90 0.70 10.50 16 14 O -0.59 -18.71 17.59 -3.05 -0.05 -18.77 16 15 C 0.15 4.74 2.48 45.03 0.11 4.85 16 16 C -0.12 -4.47 4.75 30.68 0.15 -4.33 16 17 C 0.13 5.60 4.20 86.36 0.36 5.97 16 18 N -0.62 -29.03 2.77 -699.09 -1.94 -30.96 16 19 C -0.24 -13.58 10.03 84.03 0.84 -12.74 16 20 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 21 C -0.03 -1.82 5.23 84.86 0.44 -1.37 16 22 N -0.95 -60.01 13.97 21.65 0.30 -59.71 16 23 Si 0.94 48.11 24.34 68.60 1.67 49.78 16 24 H -0.28 -13.98 6.62 99.48 0.66 -13.32 16 25 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 26 H -0.27 -13.31 6.64 99.48 0.66 -12.65 16 27 C 0.14 5.36 6.52 86.37 0.56 5.92 16 28 C -0.12 -3.59 5.31 30.67 0.16 -3.43 16 29 H 0.23 4.12 7.80 -4.41 -0.03 4.08 16 30 H 0.14 1.47 6.44 -2.39 -0.02 1.45 16 31 H 0.11 2.09 6.45 -2.39 -0.02 2.08 16 32 H 0.14 1.25 7.40 -2.38 -0.02 1.23 16 33 H 0.09 1.79 7.95 -2.39 -0.02 1.78 16 34 H 0.05 1.39 7.88 -2.39 -0.02 1.37 16 35 H 0.10 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.12 -0.36 8.14 -2.38 -0.02 -0.38 16 40 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 2.86 6.90 -2.39 -0.02 2.84 16 43 H 0.07 2.44 7.01 -2.39 -0.02 2.43 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.05 2.50 4.50 -2.39 -0.01 2.49 16 46 H 0.02 1.10 7.07 -2.38 -0.02 1.09 16 47 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 48 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 50 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.07 2.04 6.72 -2.39 -0.02 2.02 16 Total: -1.00 -84.24 403.19 4.36 -79.88 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.82 Total: 10.98 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 7.91 Total: 16.56 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -5.95 Total: -118.94 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.10 Total: -38.26 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.67 Total: 49.78 kcal Total: -84.24 4.36 -79.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754643039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.287 kcal (2) G-P(sol) polarization free energy of solvation -84.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds