Wall clock time and date at job start Wed Apr 1 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46696 * 2 1 4 4 O 1.42894 * 109.47060 * 120.00131 * 2 1 3 5 5 C 1.35500 * 116.99845 * 150.00410 * 4 2 1 6 6 C 1.39168 * 119.52381 * 179.97438 * 5 4 2 7 7 C 1.37956 * 119.25926 * 180.02562 * 6 5 4 8 8 C 1.40275 * 118.36025 * 0.02562 * 7 6 5 9 9 C 1.47612 * 120.49948 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99921 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00309 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46949 * 180.02562 * 12 11 9 14 14 H 1.08992 * 109.50040 * 55.00130 * 13 12 11 15 15 C 1.53041 * 109.49596 * 175.06618 * 13 12 11 16 16 C 1.53038 * 109.54156 * 181.31676 * 15 13 12 17 17 C 1.53193 * 109.31026 * 298.63418 * 16 15 13 18 18 N 1.46926 * 108.77801 * 54.63245 * 17 16 15 19 19 C 1.36942 * 120.63163 * 126.43230 * 18 17 16 20 20 H 1.07999 * 119.99722 * 207.66213 * 19 18 17 21 21 C 1.38799 * 119.99765 * 27.66909 * 19 18 17 22 22 N 1.31621 * 120.00404 * 17.36452 * 21 19 18 23 23 Si 1.86803 * 119.99817 * 197.36171 * 21 19 18 24 24 H 1.48495 * 109.47257 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47242 * 119.99916 * 23 21 19 26 26 H 1.48500 * 109.47156 * 239.99829 * 23 21 19 27 27 C 1.46938 * 118.76697 * 306.41514 * 18 17 16 28 28 C 1.39531 * 119.00461 * 0.24223 * 8 7 6 29 29 N 1.31666 * 120.62160 * 359.48408 * 28 8 7 30 30 H 1.09004 * 109.47196 * 299.99854 * 1 2 3 31 31 H 1.09001 * 109.47376 * 59.99935 * 1 2 3 32 32 H 1.08996 * 109.47400 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46503 * 240.00223 * 2 1 3 34 34 H 1.09003 * 109.47186 * 299.99587 * 3 2 1 35 35 H 1.08995 * 109.47293 * 60.00336 * 3 2 1 36 36 H 1.09004 * 109.46586 * 180.02562 * 3 2 1 37 37 H 1.08001 * 120.36763 * 0.04065 * 6 5 4 38 38 H 1.08004 * 120.82007 * 180.02562 * 7 6 5 39 39 H 0.97003 * 119.99784 * 359.97438 * 11 9 8 40 40 H 1.09005 * 109.46726 * 299.99870 * 12 11 9 41 41 H 1.08995 * 109.47048 * 59.99980 * 12 11 9 42 42 H 1.09007 * 109.45930 * 301.33435 * 15 13 12 43 43 H 1.08999 * 109.46194 * 61.30595 * 15 13 12 44 44 H 1.08995 * 109.49634 * 58.58319 * 16 15 13 45 45 H 1.08995 * 109.50186 * 178.68166 * 16 15 13 46 46 H 1.09001 * 109.59008 * 174.42081 * 17 16 15 47 47 H 1.09004 * 109.58643 * 294.84607 * 17 16 15 48 48 H 0.97003 * 120.00220 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.55656 * 293.78763 * 27 18 17 50 50 H 1.08995 * 109.62011 * 173.35736 * 27 18 17 51 51 H 1.07991 * 119.68487 * 179.72796 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1972 -1.3121 1.0653 6 6 3.7110 -1.9848 2.1700 7 6 4.9241 -2.6325 2.0608 8 6 5.5961 -2.5856 0.8304 9 6 6.8974 -3.2617 0.6613 10 8 7.3948 -3.8645 1.5926 11 7 7.5342 -3.2107 -0.5254 12 6 8.8259 -3.8811 -0.6931 13 6 9.3284 -3.6698 -2.1227 14 1 9.3611 -2.6028 -2.3429 15 6 10.7319 -4.2636 -2.2639 16 6 11.2487 -4.0238 -3.6842 17 6 10.3243 -4.7246 -4.6848 18 7 8.9471 -4.2655 -4.4582 19 6 8.2039 -3.7537 -5.4882 20 1 7.4223 -3.0364 -5.2857 21 6 8.4549 -4.1571 -6.7923 22 7 9.1455 -5.2541 -7.0206 23 14 7.8124 -3.1431 -8.2236 24 1 7.0724 -1.9655 -7.7033 25 1 8.9532 -2.6823 -9.0553 26 1 6.9016 -3.9751 -9.0503 27 6 8.3818 -4.3659 -3.1056 28 6 5.0188 -1.8857 -0.2296 29 7 3.8559 -1.2858 -0.0829 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 3.1659 -1.9997 3.1022 38 1 5.3460 -3.1625 2.9020 39 1 7.1371 -2.7300 -1.2686 40 1 9.5462 -3.4633 0.0103 41 1 8.7090 -4.9479 -0.5027 42 1 11.4017 -3.7865 -1.5483 43 1 10.6942 -5.3351 -2.0674 44 1 11.2631 -2.9536 -3.8902 45 1 12.2574 -4.4263 -3.7772 46 1 10.6299 -4.4757 -5.7010 47 1 10.3785 -5.8035 -4.5386 48 1 9.3212 -5.5358 -7.9320 49 1 8.2772 -5.4156 -2.8309 50 1 7.4064 -3.8803 -3.0797 51 1 5.5287 -1.8388 -1.1803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266122984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:11 Heat of formation + Delta-G solvation = -30.601284 kcal Electronic energy + Delta-G solvation = -30287.854155 eV Core-core repulsion = 26187.680403 eV Total energy + Delta-G solvation = -4100.173751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14672 -39.73934 -38.33680 -37.68606 -34.92910 -33.69028 -33.06187 -32.80021 -31.18299 -30.46910 -29.86888 -27.62804 -25.84877 -25.30392 -24.33227 -24.01893 -22.15810 -21.53416 -21.00913 -20.66828 -19.17028 -18.88653 -17.81066 -17.24440 -16.65628 -16.08908 -15.63745 -15.35854 -15.14270 -14.89339 -14.77056 -14.53735 -14.31423 -13.95534 -13.77740 -13.47752 -13.39880 -13.32290 -12.93464 -12.80975 -12.70260 -12.67010 -12.38012 -12.33115 -12.20103 -12.16868 -11.33121 -11.29114 -11.11178 -11.04929 -10.75729 -10.51763 -10.32899 -10.26757 -10.23486 -10.18882 -9.95418 -9.76856 -9.58464 -9.44941 -9.07663 -8.76767 -8.49707 -6.71061 -5.82140 -3.24874 0.48437 0.90019 2.62949 2.76162 3.15726 3.34297 3.42486 3.44059 3.61837 3.85596 4.45094 4.48861 4.49758 4.59467 4.61327 4.71102 4.81191 4.91582 5.06282 5.19637 5.26666 5.27061 5.35327 5.38735 5.41078 5.43268 5.45096 5.57083 5.59236 5.74490 5.79922 5.80576 5.83431 5.92812 5.98178 6.05759 6.20363 6.29159 6.34537 6.44153 6.55985 6.67348 6.73965 6.83080 6.89263 6.92938 7.37407 7.43553 7.50048 7.64789 7.75767 8.17283 8.41011 9.17489 9.81093 10.37570 11.26098 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.002616 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.515181 B =10699.764556 C =13233.030734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.078 3.922 3 C -0.169 4.169 4 O -0.299 6.299 5 C 0.344 3.656 6 C -0.201 4.201 7 C 0.017 3.983 8 C -0.226 4.226 9 C 0.566 3.434 10 O -0.544 6.544 11 N -0.718 5.718 12 C 0.128 3.872 13 C -0.119 4.119 14 H 0.074 0.926 15 C -0.099 4.099 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.154 3.846 28 C 0.182 3.818 29 N -0.541 5.541 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.401 0.599 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.018 0.982 48 H 0.253 0.747 49 H 0.019 0.981 50 H 0.049 0.951 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.668 9.629 16.581 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.226 4.226 4 O -0.206 6.206 5 C 0.166 3.834 6 C -0.221 4.221 7 C -0.008 4.008 8 C -0.232 4.232 9 C 0.353 3.647 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.004 3.996 13 C -0.139 4.139 14 H 0.092 0.908 15 C -0.138 4.138 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.027 3.973 28 C 0.024 3.976 29 N -0.265 5.265 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.237 0.763 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.068 0.932 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.849 9.606 16.573 22.015 hybrid contribution -0.084 0.311 -0.754 0.820 sum -10.933 9.917 15.819 21.636 Atomic orbital electron populations 1.21916 0.92691 1.03121 1.03073 1.22440 0.94583 0.92883 0.87865 1.22219 1.02258 0.95434 1.02698 1.86269 1.31414 1.63817 1.39052 1.20068 0.85574 0.88201 0.89592 1.21043 0.98190 1.03531 0.99358 1.21515 0.91136 0.91569 0.96629 1.20841 0.98734 1.06881 0.96707 1.17857 0.83913 0.80088 0.82875 1.90769 1.67457 1.43768 1.40254 1.45992 1.22810 1.55086 1.13041 1.21508 0.83156 0.97458 0.97464 1.21970 0.97507 1.01550 0.92899 0.90801 1.21338 0.94588 1.00226 0.97606 1.22169 0.98928 1.01254 0.95739 1.20808 0.82604 0.94463 0.97840 1.44054 1.10235 1.73433 1.03661 1.19195 1.15574 1.17719 0.85827 0.91667 1.25031 1.00337 0.96103 0.98133 1.70051 1.43744 1.21298 1.19435 0.86255 0.78162 0.79812 0.82726 1.20239 1.21557 1.21732 1.20903 0.93990 0.96508 0.85927 1.22706 0.88832 0.88196 0.97829 1.67281 1.10433 1.24439 1.24318 0.91653 0.90295 0.91736 0.88850 0.90864 0.92016 0.91877 0.83468 0.82835 0.76280 0.91728 0.91319 0.93394 0.92432 0.92743 0.93163 0.89520 0.96437 0.93660 0.96290 0.93225 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.68 3.10 -26.73 -0.08 0.59 16 3 C -0.17 -1.30 9.53 37.16 0.35 -0.95 16 4 O -0.30 -3.08 9.75 -18.19 -0.18 -3.26 16 5 C 0.34 3.77 7.46 -16.96 -0.13 3.65 16 6 C -0.20 -1.93 10.02 -39.34 -0.39 -2.32 16 7 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 8 C -0.23 -2.62 5.89 -104.82 -0.62 -3.24 16 9 C 0.57 7.75 7.77 -12.44 -0.10 7.65 16 10 O -0.54 -9.08 16.41 5.29 0.09 -8.99 16 11 N -0.72 -9.20 5.28 -61.32 -0.32 -9.52 16 12 C 0.13 1.78 5.07 -4.04 -0.02 1.76 16 13 C -0.12 -1.86 2.37 -90.50 -0.21 -2.08 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.10 -1.58 5.17 -26.69 -0.14 -1.72 16 16 C -0.14 -2.59 6.08 -26.61 -0.16 -2.76 16 17 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 18 N -0.59 -14.17 3.00 -172.31 -0.52 -14.68 16 19 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 20 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 21 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 22 N -0.90 -25.72 11.19 55.49 0.62 -25.09 16 23 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.15 2.98 5.60 -3.70 -0.02 2.96 16 28 C 0.18 1.99 10.71 -17.14 -0.18 1.80 16 29 N -0.54 -6.22 8.61 -12.97 -0.11 -6.33 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.90 6.97 -51.93 -0.36 0.54 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.15 1.45 7.73 -52.48 -0.41 1.04 16 39 H 0.40 4.54 5.75 -40.82 -0.23 4.31 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.05 0.91 7.14 -51.93 -0.37 0.54 16 51 H 0.17 1.50 6.41 -52.49 -0.34 1.16 16 LS Contribution 409.41 15.07 6.17 6.17 Total: -1.00 -31.50 409.41 -9.59 -41.09 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.34 Total: 2.90 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.97 Total: 1.56 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.33 Total: -55.63 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.09 Total: -12.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.50 -9.59 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266122984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.492 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds