Wall clock time and date at job start Wed Apr 1 2020 04:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46696 * 2 1 4 4 O 1.42894 * 109.47060 * 120.00131 * 2 1 3 5 5 C 1.35500 * 116.99845 * 150.00410 * 4 2 1 6 6 C 1.39168 * 119.52381 * 179.97438 * 5 4 2 7 7 C 1.37956 * 119.25926 * 180.02562 * 6 5 4 8 8 C 1.40275 * 118.36025 * 0.02562 * 7 6 5 9 9 C 1.47612 * 120.49948 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99921 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00309 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46949 * 180.02562 * 12 11 9 14 14 H 1.08992 * 109.50040 * 55.00130 * 13 12 11 15 15 C 1.53041 * 109.49596 * 175.06618 * 13 12 11 16 16 C 1.53038 * 109.54156 * 181.31676 * 15 13 12 17 17 C 1.53193 * 109.31026 * 298.63418 * 16 15 13 18 18 N 1.46926 * 108.77801 * 54.63245 * 17 16 15 19 19 C 1.36942 * 120.63163 * 126.43230 * 18 17 16 20 20 H 1.07999 * 119.99722 * 207.66213 * 19 18 17 21 21 C 1.38799 * 119.99765 * 27.66909 * 19 18 17 22 22 N 1.31621 * 120.00404 * 17.36452 * 21 19 18 23 23 Si 1.86803 * 119.99817 * 197.36171 * 21 19 18 24 24 H 1.48495 * 109.47257 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47242 * 119.99916 * 23 21 19 26 26 H 1.48500 * 109.47156 * 239.99829 * 23 21 19 27 27 C 1.46938 * 118.76697 * 306.41514 * 18 17 16 28 28 C 1.39531 * 119.00461 * 0.24223 * 8 7 6 29 29 N 1.31666 * 120.62160 * 359.48408 * 28 8 7 30 30 H 1.09004 * 109.47196 * 299.99854 * 1 2 3 31 31 H 1.09001 * 109.47376 * 59.99935 * 1 2 3 32 32 H 1.08996 * 109.47400 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46503 * 240.00223 * 2 1 3 34 34 H 1.09003 * 109.47186 * 299.99587 * 3 2 1 35 35 H 1.08995 * 109.47293 * 60.00336 * 3 2 1 36 36 H 1.09004 * 109.46586 * 180.02562 * 3 2 1 37 37 H 1.08001 * 120.36763 * 0.04065 * 6 5 4 38 38 H 1.08004 * 120.82007 * 180.02562 * 7 6 5 39 39 H 0.97003 * 119.99784 * 359.97438 * 11 9 8 40 40 H 1.09005 * 109.46726 * 299.99870 * 12 11 9 41 41 H 1.08995 * 109.47048 * 59.99980 * 12 11 9 42 42 H 1.09007 * 109.45930 * 301.33435 * 15 13 12 43 43 H 1.08999 * 109.46194 * 61.30595 * 15 13 12 44 44 H 1.08995 * 109.49634 * 58.58319 * 16 15 13 45 45 H 1.08995 * 109.50186 * 178.68166 * 16 15 13 46 46 H 1.09001 * 109.59008 * 174.42081 * 17 16 15 47 47 H 1.09004 * 109.58643 * 294.84607 * 17 16 15 48 48 H 0.97003 * 120.00220 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.55656 * 293.78763 * 27 18 17 50 50 H 1.08995 * 109.62011 * 173.35736 * 27 18 17 51 51 H 1.07991 * 119.68487 * 179.72796 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1972 -1.3121 1.0653 6 6 3.7110 -1.9848 2.1700 7 6 4.9241 -2.6325 2.0608 8 6 5.5961 -2.5856 0.8304 9 6 6.8974 -3.2617 0.6613 10 8 7.3948 -3.8645 1.5926 11 7 7.5342 -3.2107 -0.5254 12 6 8.8259 -3.8811 -0.6931 13 6 9.3284 -3.6698 -2.1227 14 1 9.3611 -2.6028 -2.3429 15 6 10.7319 -4.2636 -2.2639 16 6 11.2487 -4.0238 -3.6842 17 6 10.3243 -4.7246 -4.6848 18 7 8.9471 -4.2655 -4.4582 19 6 8.2039 -3.7537 -5.4882 20 1 7.4223 -3.0364 -5.2857 21 6 8.4549 -4.1571 -6.7923 22 7 9.1455 -5.2541 -7.0206 23 14 7.8124 -3.1431 -8.2236 24 1 7.0724 -1.9655 -7.7033 25 1 8.9532 -2.6823 -9.0553 26 1 6.9016 -3.9751 -9.0503 27 6 8.3818 -4.3659 -3.1056 28 6 5.0188 -1.8857 -0.2296 29 7 3.8559 -1.2858 -0.0829 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 3.1659 -1.9997 3.1022 38 1 5.3460 -3.1625 2.9020 39 1 7.1371 -2.7300 -1.2686 40 1 9.5462 -3.4633 0.0103 41 1 8.7090 -4.9479 -0.5027 42 1 11.4017 -3.7865 -1.5483 43 1 10.6942 -5.3351 -2.0674 44 1 11.2631 -2.9536 -3.8902 45 1 12.2574 -4.4263 -3.7772 46 1 10.6299 -4.4757 -5.7010 47 1 10.3785 -5.8035 -4.5386 48 1 9.3212 -5.5358 -7.9320 49 1 8.2772 -5.4156 -2.8309 50 1 7.4064 -3.8803 -3.0797 51 1 5.5287 -1.8388 -1.1803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266122984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:10 Heat of formation + Delta-G solvation = -50.277580 kcal Electronic energy + Delta-G solvation = -30288.707383 eV Core-core repulsion = 26187.680403 eV Total energy + Delta-G solvation = -4101.026979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.98837 -40.75876 -39.46726 -38.89448 -36.30888 -34.76024 -34.28740 -33.63514 -32.40316 -32.25504 -31.03392 -28.18689 -27.28808 -26.97412 -25.16974 -24.98048 -23.80153 -22.63452 -22.09103 -21.74246 -20.65751 -19.67100 -18.91292 -18.49486 -18.06983 -16.90823 -16.81323 -16.67243 -16.46370 -15.97851 -15.76225 -15.57178 -15.44035 -15.29813 -15.00555 -14.80013 -14.49495 -14.31400 -14.08470 -14.00909 -13.76052 -13.71541 -13.56087 -13.28248 -13.18724 -12.99462 -12.89024 -12.88028 -12.51030 -12.22610 -11.95003 -11.93416 -11.80795 -11.77786 -11.56576 -11.44762 -11.14791 -11.08518 -11.05997 -10.63349 -10.52534 -10.16066 -9.61844 -8.66522 -7.85402 -5.30602 -0.38597 0.10534 1.47010 1.49521 1.59236 1.77477 1.89769 2.12660 2.52280 2.73752 3.07041 3.29626 3.59177 3.64198 3.76150 3.87878 3.92683 4.00273 4.00996 4.03854 4.04148 4.10115 4.26870 4.43277 4.54018 4.58145 4.61794 4.66017 4.70121 4.78754 4.81975 4.84457 4.90314 4.91631 4.92796 5.01253 5.04643 5.13276 5.19606 5.23191 5.25140 5.30803 5.35359 5.39543 5.48134 5.59474 5.69085 5.80633 6.12618 6.40237 6.46305 6.62429 7.12456 7.16652 7.88332 8.39911 9.20966 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.002616 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.515181 B =10699.764556 C =13233.030734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.164 4.164 4 O -0.304 6.304 5 C 0.335 3.665 6 C -0.195 4.195 7 C 0.017 3.983 8 C -0.236 4.236 9 C 0.569 3.431 10 O -0.577 6.577 11 N -0.713 5.713 12 C 0.138 3.862 13 C -0.101 4.101 14 H 0.079 0.921 15 C -0.097 4.097 16 C -0.130 4.130 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.258 4.258 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.296 1.296 27 C 0.151 3.849 28 C 0.182 3.818 29 N -0.554 5.554 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.172 0.828 38 H 0.162 0.838 39 H 0.409 0.591 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.051 0.949 47 H -0.008 1.008 48 H 0.248 0.752 49 H 0.006 0.994 50 H 0.057 0.943 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 11.430 18.024 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.222 4.222 4 O -0.211 6.211 5 C 0.156 3.844 6 C -0.215 4.215 7 C -0.009 4.009 8 C -0.242 4.242 9 C 0.357 3.643 10 O -0.458 6.458 11 N -0.365 5.365 12 C 0.014 3.986 13 C -0.121 4.121 14 H 0.097 0.903 15 C -0.135 4.135 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.332 5.332 19 C -0.388 4.388 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.792 3.208 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.223 1.223 27 C 0.026 3.974 28 C 0.024 3.976 29 N -0.278 5.278 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.189 0.811 38 H 0.180 0.820 39 H 0.246 0.754 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.010 0.990 48 H 0.057 0.943 49 H 0.024 0.976 50 H 0.076 0.924 51 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.726 11.435 18.034 24.361 hybrid contribution 0.114 -0.261 -1.174 1.208 sum -11.612 11.175 16.860 23.323 Atomic orbital electron populations 1.21921 0.90973 1.03271 1.04189 1.22626 0.95913 0.93007 0.86863 1.22190 1.01147 0.95078 1.03746 1.86270 1.31108 1.63827 1.39861 1.20353 0.85806 0.88340 0.89866 1.21272 0.97825 1.02467 0.99918 1.21671 0.91285 0.91455 0.96475 1.20737 0.98155 1.07700 0.97643 1.18077 0.84276 0.79509 0.82412 1.90751 1.68413 1.45345 1.41271 1.45927 1.22478 1.54808 1.13239 1.21328 0.83872 0.97219 0.96189 1.21731 0.96551 1.01111 0.92751 0.90288 1.21338 0.95085 1.00563 0.96533 1.21995 0.98644 1.00469 0.95797 1.20642 0.83683 0.93501 0.97551 1.44326 1.10636 1.73406 1.04864 1.19583 1.15279 1.17240 0.86673 0.90994 1.25781 1.01353 0.97141 1.00568 1.70208 1.45708 1.23060 1.19371 0.85261 0.77308 0.78651 0.79567 1.18669 1.21943 1.22289 1.21047 0.95396 0.96339 0.84668 1.22888 0.88723 0.87780 0.98191 1.67307 1.10685 1.24878 1.24883 0.91030 0.88671 0.92074 0.90151 0.89397 0.91392 0.93506 0.81100 0.82015 0.75365 0.90498 0.92165 0.90042 0.92641 0.92768 0.91342 0.93060 0.99008 0.94277 0.97620 0.92413 0.80498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.56 71.98 0.69 -0.96 16 2 C 0.07 1.15 3.10 30.60 0.09 1.24 16 3 C -0.16 -2.31 9.53 71.98 0.69 -1.62 16 4 O -0.30 -5.88 9.75 -88.01 -0.86 -6.73 16 5 C 0.33 6.93 7.46 84.83 0.63 7.56 16 6 C -0.19 -3.40 10.02 22.43 0.22 -3.18 16 7 C 0.02 0.32 9.70 22.70 0.22 0.54 16 8 C -0.24 -5.22 5.89 -20.00 -0.12 -5.33 16 9 C 0.57 14.87 7.77 86.72 0.67 15.54 16 10 O -0.58 -18.65 16.41 -3.97 -0.07 -18.72 16 11 N -0.71 -17.08 5.28 -466.18 -2.46 -19.55 16 12 C 0.14 3.55 5.07 86.38 0.44 3.99 16 13 C -0.10 -2.97 2.37 -10.71 -0.03 -3.00 16 14 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.10 -2.85 5.17 30.62 0.16 -2.70 16 16 C -0.13 -4.60 6.08 30.67 0.19 -4.41 16 17 C 0.17 8.13 5.31 86.36 0.46 8.58 16 18 N -0.61 -29.35 3.00 -699.06 -2.09 -31.44 16 19 C -0.26 -13.64 9.58 84.03 0.81 -12.83 16 20 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 22 N -0.94 -55.18 11.19 21.65 0.24 -54.93 16 23 Si 0.96 44.01 29.59 68.60 2.03 46.04 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 27 C 0.15 5.77 5.60 86.36 0.48 6.26 16 28 C 0.18 3.76 10.71 85.03 0.91 4.67 16 29 N -0.55 -12.18 8.61 -307.82 -2.65 -14.83 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.50 6.97 -2.39 -0.02 1.48 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.16 2.83 7.73 -2.91 -0.02 2.80 16 39 H 0.41 8.53 5.75 -92.71 -0.53 8.00 16 40 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16 47 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 48 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.06 2.07 7.14 -2.39 -0.02 2.05 16 51 H 0.18 2.99 6.41 -2.92 -0.02 2.98 16 Total: -1.00 -68.87 409.41 1.47 -67.40 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.39 Total: 20.92 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.94 Total: 11.85 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -6.96 Total: -120.76 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.92 Total: -25.45 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.87 1.47 -67.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266122984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.126 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds