Wall clock time and date at job start Wed Apr 1 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47509 * 2 1 4 4 C 1.50702 * 109.46812 * 240.00234 * 2 1 3 5 5 H 1.08008 * 119.99875 * 275.17192 * 4 2 1 6 6 C 1.37878 * 120.00226 * 95.17899 * 4 2 1 7 7 N 1.31514 * 120.00155 * 181.96862 * 6 4 2 8 8 Si 1.86797 * 119.99664 * 1.95821 * 6 4 2 9 9 H 1.48505 * 109.46891 * 85.45512 * 8 6 4 10 10 H 1.48503 * 109.47094 * 205.44919 * 8 6 4 11 11 H 1.48502 * 109.47666 * 325.45312 * 8 6 4 12 12 N 1.46494 * 109.46853 * 120.00467 * 2 1 3 13 13 C 1.46499 * 120.00307 * 59.99789 * 12 2 1 14 14 S 1.65603 * 119.99752 * 239.99604 * 12 2 1 15 15 O 1.42100 * 106.40239 * 336.45870 * 14 12 2 16 16 O 1.42106 * 106.40035 * 203.54270 * 14 12 2 17 17 N 1.65597 * 107.21742 * 90.00263 * 14 12 2 18 18 C 1.46500 * 119.99936 * 65.00083 * 17 14 12 19 19 C 1.53005 * 109.47051 * 164.72543 * 18 17 14 20 20 C 1.53001 * 109.47184 * 179.97438 * 19 18 17 21 21 N 1.46897 * 109.47412 * 179.97438 * 20 19 18 22 22 C 1.46855 * 110.99547 * 65.05698 * 21 20 19 23 23 C 1.53035 * 109.51740 * 185.83956 * 22 21 20 24 24 C 1.53115 * 109.28238 * 300.81894 * 23 22 21 25 25 C 1.53124 * 109.15692 * 57.66022 * 24 23 22 26 26 C 1.46841 * 111.00118 * 189.26891 * 21 20 19 27 27 H 1.09004 * 109.46338 * 294.17292 * 26 21 20 28 28 C 1.52993 * 109.46477 * 54.14549 * 26 21 20 29 29 H 1.09003 * 109.47264 * 177.98452 * 1 2 3 30 30 H 1.08998 * 109.47235 * 297.98714 * 1 2 3 31 31 H 1.09005 * 109.47148 * 57.98534 * 1 2 3 32 32 H 0.97000 * 119.99988 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47331 * 269.99973 * 13 12 2 34 34 H 1.09001 * 109.46890 * 30.00105 * 13 12 2 35 35 H 1.09008 * 109.47397 * 149.99667 * 13 12 2 36 36 H 0.97001 * 120.00073 * 244.72404 * 17 14 12 37 37 H 1.08999 * 109.46984 * 284.72131 * 18 17 14 38 38 H 1.09002 * 109.47398 * 44.72504 * 18 17 14 39 39 H 1.08999 * 109.46890 * 299.99645 * 19 18 17 40 40 H 1.09002 * 109.47051 * 59.99749 * 19 18 17 41 41 H 1.09002 * 109.47062 * 300.00280 * 20 19 18 42 42 H 1.09008 * 109.47014 * 59.99623 * 20 19 18 43 43 H 1.08991 * 109.46363 * 305.85344 * 22 21 20 44 44 H 1.09001 * 109.45963 * 65.84048 * 22 21 20 45 45 H 1.09001 * 109.50727 * 60.76855 * 23 22 21 46 46 H 1.09005 * 109.49853 * 180.83984 * 23 22 21 47 47 H 1.08999 * 109.52467 * 177.55874 * 24 23 22 48 48 H 1.08999 * 109.52591 * 297.75593 * 24 23 22 49 49 H 1.08993 * 109.50500 * 62.28452 * 25 24 23 50 50 H 1.09001 * 109.50255 * 182.36562 * 25 24 23 51 51 H 1.09007 * 109.47125 * 53.38009 * 28 26 21 52 52 H 1.09003 * 109.47243 * 173.38005 * 28 26 21 53 53 H 1.08999 * 109.47109 * 293.37999 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1328 -1.7858 -1.2301 6 6 2.3637 0.0125 -2.3569 7 7 2.7651 -0.6104 -3.4435 8 14 2.2422 1.8764 -2.3397 9 1 3.4966 2.4491 -1.7884 10 1 2.0387 2.3720 -3.7247 11 1 1.0949 2.2900 -1.4923 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0933 1.4279 14 16 2.9704 0.1140 2.2862 15 8 3.5795 1.1828 1.5748 16 8 3.7118 -0.8792 2.9813 17 7 1.9607 0.8088 3.3998 18 6 1.1510 -0.0355 4.2816 19 6 0.6144 0.8058 5.4415 20 6 -0.2318 -0.0758 6.3622 21 7 -0.7466 0.7317 7.4762 22 6 -1.6757 1.7617 6.9941 23 6 -2.0774 2.6724 8.1565 24 6 -2.7407 1.8322 9.2512 25 6 -1.7700 0.7370 9.7017 26 6 -1.3772 -0.1178 8.4945 27 1 -2.2681 -0.5861 8.0759 28 6 -0.3916 -1.2014 8.9362 29 1 -0.3634 -1.0270 -0.0361 30 1 -0.3633 0.4822 0.9075 31 1 -0.3634 0.5448 -0.8714 32 1 2.9979 -0.1018 -4.2360 33 1 0.7375 -2.1445 1.9992 34 1 1.5294 -2.5969 0.4706 35 1 2.4628 -2.5821 1.9862 36 1 1.9084 1.7748 3.4709 37 1 0.3161 -0.4529 3.7189 38 1 1.7657 -0.8455 4.6743 39 1 1.4493 1.2232 6.0043 40 1 -0.0004 1.6158 5.0489 41 1 -1.0667 -0.4930 5.7992 42 1 0.3826 -0.8861 6.7548 43 1 -1.1903 2.3547 6.2191 44 1 -2.5652 1.2844 6.5827 45 1 -1.1902 3.1606 8.5598 46 1 -2.7786 3.4277 7.8015 47 1 -2.9893 2.4699 10.0995 48 1 -3.6493 1.3750 8.8594 49 1 -0.8780 1.1946 10.1292 50 1 -2.2519 0.1093 10.4513 51 1 0.5449 -0.7367 9.2449 52 1 -0.8142 -1.7578 9.7728 53 1 -0.2032 -1.8816 8.1056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330413953.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:32 Heat of formation + Delta-G solvation = -111.887672 kcal Electronic energy + Delta-G solvation = -30111.045972 eV Core-core repulsion = 26142.791329 eV Total energy + Delta-G solvation = -3968.254642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.33486 -38.38578 -37.98964 -37.16489 -36.89898 -34.74087 -34.48554 -33.46903 -31.65357 -31.11414 -27.98033 -27.28353 -27.00302 -26.24461 -24.28950 -22.52437 -22.32242 -21.89324 -20.54669 -20.17567 -19.28688 -18.76247 -18.13349 -17.50194 -17.02901 -16.64959 -16.28410 -15.97610 -15.83029 -15.32076 -15.21883 -15.09518 -14.88064 -14.59871 -14.49032 -14.38764 -14.08848 -13.70624 -13.55297 -13.52650 -13.41930 -13.17879 -13.08947 -13.01836 -12.87313 -12.83701 -12.70794 -12.56502 -12.50316 -12.46347 -12.23351 -12.02636 -11.89677 -11.80922 -11.76572 -11.53942 -11.23892 -11.10981 -11.01107 -10.76640 -10.43982 -9.68031 -9.21257 -8.32116 -6.35589 -0.35548 1.30187 1.40299 1.42642 2.02346 2.32321 2.60940 2.91157 3.08058 3.42634 3.85614 3.87890 3.95400 4.01709 4.06768 4.12584 4.18277 4.30133 4.45787 4.46502 4.48898 4.55270 4.59655 4.65182 4.69325 4.72985 4.74055 4.81592 4.84585 4.90729 4.92202 4.95323 5.00433 5.02887 5.09912 5.13557 5.16050 5.24320 5.26742 5.28016 5.37214 5.37332 5.38739 5.51188 5.53580 5.58563 5.91759 6.16331 6.21302 6.25973 6.34215 6.71226 7.30072 8.83567 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018659 B = 0.002452 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.274844 B =11418.289547 C =11873.729906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.236 3.764 3 H 0.044 0.956 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.939 5.939 8 Si 0.914 3.086 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.231 1.231 12 N -0.992 5.992 13 C 0.091 3.909 14 S 2.790 3.210 15 O -1.020 7.020 16 O -1.010 7.010 17 N -1.116 6.116 18 C 0.116 3.884 19 C -0.113 4.113 20 C 0.053 3.947 21 N -0.541 5.541 22 C 0.049 3.951 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.109 4.109 26 C 0.079 3.921 27 H 0.035 0.965 28 C -0.148 4.148 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.422 0.578 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.029 0.971 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.058 0.942 52 H 0.070 0.930 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 3.612 27.577 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.131 3.869 3 H 0.062 0.938 4 C -0.557 4.557 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.579 5.579 8 Si 0.738 3.262 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.153 1.153 12 N -0.834 5.834 13 C -0.055 4.055 14 S 2.799 3.201 15 O -1.004 7.004 16 O -0.993 6.993 17 N -0.880 5.880 18 C -0.011 4.011 19 C -0.152 4.152 20 C -0.076 4.076 21 N -0.266 5.266 22 C -0.079 4.079 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.147 4.147 26 C -0.029 4.029 27 H 0.053 0.947 28 C -0.206 4.206 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.258 0.742 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.078 0.922 52 H 0.089 0.911 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.712 3.695 27.621 30.630 hybrid contribution -0.547 0.569 -1.181 1.420 sum -13.260 4.264 26.440 29.885 Atomic orbital electron populations 1.22103 0.95238 1.01991 1.00569 1.18921 0.93313 0.92064 0.82555 0.93782 1.21469 1.42930 0.94932 0.96341 0.93006 1.25751 0.94190 1.02620 0.95314 1.70008 1.46580 1.37696 1.03583 0.86251 0.80450 0.81509 0.78027 1.20719 1.20460 1.15348 1.57615 1.70016 1.21144 1.34611 1.21509 1.00882 0.80594 1.02480 1.01387 0.73709 0.72406 0.72553 1.93547 1.75896 1.57478 1.73440 1.93505 1.69952 1.61305 1.74552 1.55714 1.62298 1.18117 1.51883 1.21392 0.94822 0.93419 0.91432 1.21688 1.00264 0.98512 0.94733 1.22105 0.98140 0.95989 0.91344 1.61960 1.37497 1.14755 1.12411 1.22193 0.94063 0.93963 0.97642 1.21576 1.00619 0.97609 0.95563 1.21591 0.98036 0.97530 0.98756 1.21623 0.99443 0.97162 0.96502 1.21652 0.95474 0.93107 0.92637 0.94689 1.21927 0.99461 0.97556 1.01615 0.92170 0.91974 0.93317 0.92422 0.90321 0.91635 0.91270 0.74228 0.90477 0.90715 0.90745 0.90513 0.94231 0.89524 0.90300 0.95245 0.91761 0.90843 0.91081 0.92347 0.91731 0.90649 0.92247 0.91131 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.14 71.98 0.66 -4.35 16 2 C 0.24 10.46 2.24 44.25 0.10 10.56 16 3 H 0.04 2.07 4.17 -2.39 -0.01 2.06 16 4 C -0.52 -28.38 8.73 25.60 0.22 -28.16 16 5 H 0.05 3.09 6.82 -2.91 -0.02 3.07 16 6 C 0.02 1.18 5.47 84.65 0.46 1.64 16 7 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 8 Si 0.91 44.51 26.80 68.60 1.84 46.35 16 9 H -0.28 -14.36 7.11 99.48 0.71 -13.66 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.23 -9.89 6.74 99.48 0.67 -9.22 16 12 N -0.99 -38.02 3.12 -520.46 -1.62 -39.65 16 13 C 0.09 2.93 9.75 127.77 1.25 4.18 16 14 S 2.79 103.24 6.14 -56.49 -0.35 102.89 16 15 O -1.02 -46.45 16.70 -128.00 -2.14 -48.59 16 16 O -1.01 -40.44 16.21 -128.00 -2.07 -42.51 16 17 N -1.12 -27.92 6.05 -187.48 -1.14 -29.06 16 18 C 0.12 2.23 6.25 86.38 0.54 2.77 16 19 C -0.11 -1.74 5.27 30.60 0.16 -1.58 16 20 C 0.05 0.75 4.66 86.30 0.40 1.15 16 21 N -0.54 -7.88 4.50 -871.11 -3.92 -11.80 16 22 C 0.05 0.66 5.29 86.32 0.46 1.12 16 23 C -0.12 -1.36 6.09 30.64 0.19 -1.18 16 24 C -0.12 -1.29 6.00 30.67 0.18 -1.10 16 25 C -0.11 -1.23 5.37 30.65 0.16 -1.06 16 26 C 0.08 1.02 2.44 44.94 0.11 1.13 16 27 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 28 C -0.15 -1.73 8.55 71.98 0.62 -1.12 16 29 H 0.06 2.06 7.74 -2.39 -0.02 2.04 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.80 7.86 -2.38 -0.02 1.79 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 2.37 6.56 -2.39 -0.02 2.35 16 35 H 0.07 2.18 7.02 -2.38 -0.02 2.16 16 36 H 0.42 8.97 8.65 -96.75 -0.84 8.13 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.50 7.75 -2.39 -0.02 1.48 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.09 6.41 -2.39 -0.02 1.08 16 41 H 0.04 0.55 8.13 -2.39 -0.02 0.53 16 42 H 0.09 1.21 5.84 -2.38 -0.01 1.19 16 43 H 0.08 1.06 6.18 -2.39 -0.01 1.05 16 44 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 52 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.06 0.68 6.53 -2.39 -0.02 0.66 16 Total: -1.00 -72.83 411.65 -3.58 -76.41 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.01 Total: 19.69 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 5.51 Total: -15.99 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -6.38 Total: -138.25 kcal Atomic # 8 Polarization: -86.89 SS G_CDS: -4.21 Total: -91.10 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.84 Total: 46.35 kcal Atomic # 16 Polarization: 103.24 SS G_CDS: -0.35 Total: 102.89 kcal Total: -72.83 -3.58 -76.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330413953.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.474 kcal (2) G-P(sol) polarization free energy of solvation -72.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds