Wall clock time and date at job start Wed Apr 1 2020 05:29:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08995 * 109.47509 * 2 1
4 4 C 1.50702 * 109.46812 * 240.00234 * 2 1 3
5 5 H 1.08008 * 119.99875 * 275.17192 * 4 2 1
6 6 C 1.37878 * 120.00226 * 95.17899 * 4 2 1
7 7 N 1.31514 * 120.00155 * 181.96862 * 6 4 2
8 8 Si 1.86797 * 119.99664 * 1.95821 * 6 4 2
9 9 H 1.48505 * 109.46891 * 85.45512 * 8 6 4
10 10 H 1.48503 * 109.47094 * 205.44919 * 8 6 4
11 11 H 1.48502 * 109.47666 * 325.45312 * 8 6 4
12 12 N 1.46494 * 109.46853 * 120.00467 * 2 1 3
13 13 C 1.46499 * 120.00307 * 59.99789 * 12 2 1
14 14 S 1.65603 * 119.99752 * 239.99604 * 12 2 1
15 15 O 1.42100 * 106.40239 * 336.45870 * 14 12 2
16 16 O 1.42106 * 106.40035 * 203.54270 * 14 12 2
17 17 N 1.65597 * 107.21742 * 90.00263 * 14 12 2
18 18 C 1.46500 * 119.99936 * 65.00083 * 17 14 12
19 19 C 1.53005 * 109.47051 * 164.72543 * 18 17 14
20 20 C 1.53001 * 109.47184 * 179.97438 * 19 18 17
21 21 N 1.46897 * 109.47412 * 179.97438 * 20 19 18
22 22 C 1.46855 * 110.99547 * 65.05698 * 21 20 19
23 23 C 1.53035 * 109.51740 * 185.83956 * 22 21 20
24 24 C 1.53115 * 109.28238 * 300.81894 * 23 22 21
25 25 C 1.53124 * 109.15692 * 57.66022 * 24 23 22
26 26 C 1.46841 * 111.00118 * 189.26891 * 21 20 19
27 27 H 1.09004 * 109.46338 * 294.17292 * 26 21 20
28 28 C 1.52993 * 109.46477 * 54.14549 * 26 21 20
29 29 H 1.09003 * 109.47264 * 177.98452 * 1 2 3
30 30 H 1.08998 * 109.47235 * 297.98714 * 1 2 3
31 31 H 1.09005 * 109.47148 * 57.98534 * 1 2 3
32 32 H 0.97000 * 119.99988 * 179.97438 * 7 6 4
33 33 H 1.08996 * 109.47331 * 269.99973 * 13 12 2
34 34 H 1.09001 * 109.46890 * 30.00105 * 13 12 2
35 35 H 1.09008 * 109.47397 * 149.99667 * 13 12 2
36 36 H 0.97001 * 120.00073 * 244.72404 * 17 14 12
37 37 H 1.08999 * 109.46984 * 284.72131 * 18 17 14
38 38 H 1.09002 * 109.47398 * 44.72504 * 18 17 14
39 39 H 1.08999 * 109.46890 * 299.99645 * 19 18 17
40 40 H 1.09002 * 109.47051 * 59.99749 * 19 18 17
41 41 H 1.09002 * 109.47062 * 300.00280 * 20 19 18
42 42 H 1.09008 * 109.47014 * 59.99623 * 20 19 18
43 43 H 1.08991 * 109.46363 * 305.85344 * 22 21 20
44 44 H 1.09001 * 109.45963 * 65.84048 * 22 21 20
45 45 H 1.09001 * 109.50727 * 60.76855 * 23 22 21
46 46 H 1.09005 * 109.49853 * 180.83984 * 23 22 21
47 47 H 1.08999 * 109.52467 * 177.55874 * 24 23 22
48 48 H 1.08999 * 109.52591 * 297.75593 * 24 23 22
49 49 H 1.08993 * 109.50500 * 62.28452 * 25 24 23
50 50 H 1.09001 * 109.50255 * 182.36562 * 25 24 23
51 51 H 1.09007 * 109.47125 * 53.38009 * 28 26 21
52 52 H 1.09003 * 109.47243 * 173.38005 * 28 26 21
53 53 H 1.08999 * 109.47109 * 293.37999 * 28 26 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.1328 -1.7858 -1.2301
6 6 2.3637 0.0125 -2.3569
7 7 2.7651 -0.6104 -3.4435
8 14 2.2422 1.8764 -2.3397
9 1 3.4966 2.4491 -1.7884
10 1 2.0387 2.3720 -3.7247
11 1 1.0949 2.2900 -1.4923
12 7 2.0183 -0.6907 1.1961
13 6 1.6643 -2.0933 1.4279
14 16 2.9704 0.1140 2.2862
15 8 3.5795 1.1828 1.5748
16 8 3.7118 -0.8792 2.9813
17 7 1.9607 0.8088 3.3998
18 6 1.1510 -0.0355 4.2816
19 6 0.6144 0.8058 5.4415
20 6 -0.2318 -0.0758 6.3622
21 7 -0.7466 0.7317 7.4762
22 6 -1.6757 1.7617 6.9941
23 6 -2.0774 2.6724 8.1565
24 6 -2.7407 1.8322 9.2512
25 6 -1.7700 0.7370 9.7017
26 6 -1.3772 -0.1178 8.4945
27 1 -2.2681 -0.5861 8.0759
28 6 -0.3916 -1.2014 8.9362
29 1 -0.3634 -1.0270 -0.0361
30 1 -0.3633 0.4822 0.9075
31 1 -0.3634 0.5448 -0.8714
32 1 2.9979 -0.1018 -4.2360
33 1 0.7375 -2.1445 1.9992
34 1 1.5294 -2.5969 0.4706
35 1 2.4628 -2.5821 1.9862
36 1 1.9084 1.7748 3.4709
37 1 0.3161 -0.4529 3.7189
38 1 1.7657 -0.8455 4.6743
39 1 1.4493 1.2232 6.0043
40 1 -0.0004 1.6158 5.0489
41 1 -1.0667 -0.4930 5.7992
42 1 0.3826 -0.8861 6.7548
43 1 -1.1903 2.3547 6.2191
44 1 -2.5652 1.2844 6.5827
45 1 -1.1902 3.1606 8.5598
46 1 -2.7786 3.4277 7.8015
47 1 -2.9893 2.4699 10.0995
48 1 -3.6493 1.3750 8.8594
49 1 -0.8780 1.1946 10.1292
50 1 -2.2519 0.1093 10.4513
51 1 0.5449 -0.7367 9.2449
52 1 -0.8142 -1.7578 9.7728
53 1 -0.2032 -1.8816 8.1056
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000330413953.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:32
Heat of formation + Delta-G solvation = -111.887672 kcal
Electronic energy + Delta-G solvation = -30111.045972 eV
Core-core repulsion = 26142.791329 eV
Total energy + Delta-G solvation = -3968.254642 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.203 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-40.33486 -38.38578 -37.98964 -37.16489 -36.89898 -34.74087 -34.48554 -33.46903
-31.65357 -31.11414 -27.98033 -27.28353 -27.00302 -26.24461 -24.28950 -22.52437
-22.32242 -21.89324 -20.54669 -20.17567 -19.28688 -18.76247 -18.13349 -17.50194
-17.02901 -16.64959 -16.28410 -15.97610 -15.83029 -15.32076 -15.21883 -15.09518
-14.88064 -14.59871 -14.49032 -14.38764 -14.08848 -13.70624 -13.55297 -13.52650
-13.41930 -13.17879 -13.08947 -13.01836 -12.87313 -12.83701 -12.70794 -12.56502
-12.50316 -12.46347 -12.23351 -12.02636 -11.89677 -11.80922 -11.76572 -11.53942
-11.23892 -11.10981 -11.01107 -10.76640 -10.43982 -9.68031 -9.21257 -8.32116
-6.35589 -0.35548 1.30187 1.40299 1.42642 2.02346 2.32321 2.60940
2.91157 3.08058 3.42634 3.85614 3.87890 3.95400 4.01709 4.06768
4.12584 4.18277 4.30133 4.45787 4.46502 4.48898 4.55270 4.59655
4.65182 4.69325 4.72985 4.74055 4.81592 4.84585 4.90729 4.92202
4.95323 5.00433 5.02887 5.09912 5.13557 5.16050 5.24320 5.26742
5.28016 5.37214 5.37332 5.38739 5.51188 5.53580 5.58563 5.91759
6.16331 6.21302 6.25973 6.34215 6.71226 7.30072 8.83567
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.018659 B = 0.002452 C = 0.002358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1500.274844 B =11418.289547 C =11873.729906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.236 3.764
3 H 0.044 0.956
4 C -0.517 4.517
5 H 0.052 0.948
6 C 0.020 3.980
7 N -0.939 5.939
8 Si 0.914 3.086
9 H -0.281 1.281
10 H -0.279 1.279
11 H -0.231 1.231
12 N -0.992 5.992
13 C 0.091 3.909
14 S 2.790 3.210
15 O -1.020 7.020
16 O -1.010 7.010
17 N -1.116 6.116
18 C 0.116 3.884
19 C -0.113 4.113
20 C 0.053 3.947
21 N -0.541 5.541
22 C 0.049 3.951
23 C -0.116 4.116
24 C -0.122 4.122
25 C -0.109 4.109
26 C 0.079 3.921
27 H 0.035 0.965
28 C -0.148 4.148
29 H 0.059 0.941
30 H 0.061 0.939
31 H 0.048 0.952
32 H 0.267 0.733
33 H 0.078 0.922
34 H 0.065 0.935
35 H 0.069 0.931
36 H 0.422 0.578
37 H 0.077 0.923
38 H 0.074 0.926
39 H 0.074 0.926
40 H 0.076 0.924
41 H 0.039 0.961
42 H 0.086 0.914
43 H 0.079 0.921
44 H 0.029 0.971
45 H 0.064 0.936
46 H 0.073 0.927
47 H 0.070 0.930
48 H 0.058 0.942
49 H 0.064 0.936
50 H 0.075 0.925
51 H 0.058 0.942
52 H 0.070 0.930
53 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.125 3.612 27.577 31.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.131 3.869
3 H 0.062 0.938
4 C -0.557 4.557
5 H 0.070 0.930
6 C -0.179 4.179
7 N -0.579 5.579
8 Si 0.738 3.262
9 H -0.207 1.207
10 H -0.205 1.205
11 H -0.153 1.153
12 N -0.834 5.834
13 C -0.055 4.055
14 S 2.799 3.201
15 O -1.004 7.004
16 O -0.993 6.993
17 N -0.880 5.880
18 C -0.011 4.011
19 C -0.152 4.152
20 C -0.076 4.076
21 N -0.266 5.266
22 C -0.079 4.079
23 C -0.154 4.154
24 C -0.159 4.159
25 C -0.147 4.147
26 C -0.029 4.029
27 H 0.053 0.947
28 C -0.206 4.206
29 H 0.078 0.922
30 H 0.080 0.920
31 H 0.067 0.933
32 H 0.076 0.924
33 H 0.097 0.903
34 H 0.084 0.916
35 H 0.087 0.913
36 H 0.258 0.742
37 H 0.095 0.905
38 H 0.093 0.907
39 H 0.093 0.907
40 H 0.095 0.905
41 H 0.058 0.942
42 H 0.105 0.895
43 H 0.097 0.903
44 H 0.048 0.952
45 H 0.082 0.918
46 H 0.092 0.908
47 H 0.089 0.911
48 H 0.077 0.923
49 H 0.083 0.917
50 H 0.094 0.906
51 H 0.078 0.922
52 H 0.089 0.911
53 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -12.712 3.695 27.621 30.630
hybrid contribution -0.547 0.569 -1.181 1.420
sum -13.260 4.264 26.440 29.885
Atomic orbital electron populations
1.22103 0.95238 1.01991 1.00569 1.18921 0.93313 0.92064 0.82555
0.93782 1.21469 1.42930 0.94932 0.96341 0.93006 1.25751 0.94190
1.02620 0.95314 1.70008 1.46580 1.37696 1.03583 0.86251 0.80450
0.81509 0.78027 1.20719 1.20460 1.15348 1.57615 1.70016 1.21144
1.34611 1.21509 1.00882 0.80594 1.02480 1.01387 0.73709 0.72406
0.72553 1.93547 1.75896 1.57478 1.73440 1.93505 1.69952 1.61305
1.74552 1.55714 1.62298 1.18117 1.51883 1.21392 0.94822 0.93419
0.91432 1.21688 1.00264 0.98512 0.94733 1.22105 0.98140 0.95989
0.91344 1.61960 1.37497 1.14755 1.12411 1.22193 0.94063 0.93963
0.97642 1.21576 1.00619 0.97609 0.95563 1.21591 0.98036 0.97530
0.98756 1.21623 0.99443 0.97162 0.96502 1.21652 0.95474 0.93107
0.92637 0.94689 1.21927 0.99461 0.97556 1.01615 0.92170 0.91974
0.93317 0.92422 0.90321 0.91635 0.91270 0.74228 0.90477 0.90715
0.90745 0.90513 0.94231 0.89524 0.90300 0.95245 0.91761 0.90843
0.91081 0.92347 0.91731 0.90649 0.92247 0.91131 0.92360
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.01 9.14 71.98 0.66 -4.35 16
2 C 0.24 10.46 2.24 44.25 0.10 10.56 16
3 H 0.04 2.07 4.17 -2.39 -0.01 2.06 16
4 C -0.52 -28.38 8.73 25.60 0.22 -28.16 16
5 H 0.05 3.09 6.82 -2.91 -0.02 3.07 16
6 C 0.02 1.18 5.47 84.65 0.46 1.64 16
7 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16
8 Si 0.91 44.51 26.80 68.60 1.84 46.35 16
9 H -0.28 -14.36 7.11 99.48 0.71 -13.66 16
10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
11 H -0.23 -9.89 6.74 99.48 0.67 -9.22 16
12 N -0.99 -38.02 3.12 -520.46 -1.62 -39.65 16
13 C 0.09 2.93 9.75 127.77 1.25 4.18 16
14 S 2.79 103.24 6.14 -56.49 -0.35 102.89 16
15 O -1.02 -46.45 16.70 -128.00 -2.14 -48.59 16
16 O -1.01 -40.44 16.21 -128.00 -2.07 -42.51 16
17 N -1.12 -27.92 6.05 -187.48 -1.14 -29.06 16
18 C 0.12 2.23 6.25 86.38 0.54 2.77 16
19 C -0.11 -1.74 5.27 30.60 0.16 -1.58 16
20 C 0.05 0.75 4.66 86.30 0.40 1.15 16
21 N -0.54 -7.88 4.50 -871.11 -3.92 -11.80 16
22 C 0.05 0.66 5.29 86.32 0.46 1.12 16
23 C -0.12 -1.36 6.09 30.64 0.19 -1.18 16
24 C -0.12 -1.29 6.00 30.67 0.18 -1.10 16
25 C -0.11 -1.23 5.37 30.65 0.16 -1.06 16
26 C 0.08 1.02 2.44 44.94 0.11 1.13 16
27 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16
28 C -0.15 -1.73 8.55 71.98 0.62 -1.12 16
29 H 0.06 2.06 7.74 -2.39 -0.02 2.04 16
30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
31 H 0.05 1.80 7.86 -2.38 -0.02 1.79 16
32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16
33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
34 H 0.06 2.37 6.56 -2.39 -0.02 2.35 16
35 H 0.07 2.18 7.02 -2.38 -0.02 2.16 16
36 H 0.42 8.97 8.65 -96.75 -0.84 8.13 16
37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
38 H 0.07 1.50 7.75 -2.39 -0.02 1.48 16
39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
40 H 0.08 1.09 6.41 -2.39 -0.02 1.08 16
41 H 0.04 0.55 8.13 -2.39 -0.02 0.53 16
42 H 0.09 1.21 5.84 -2.38 -0.01 1.19 16
43 H 0.08 1.06 6.18 -2.39 -0.01 1.05 16
44 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16
45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
46 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16
47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
48 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
51 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16
52 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
53 H 0.06 0.68 6.53 -2.39 -0.02 0.66 16
Total: -1.00 -72.83 411.65 -3.58 -76.41
By element:
Atomic # 1 Polarization: 19.69 SS G_CDS: 0.01 Total: 19.69 kcal
Atomic # 6 Polarization: -21.50 SS G_CDS: 5.51 Total: -15.99 kcal
Atomic # 7 Polarization: -131.87 SS G_CDS: -6.38 Total: -138.25 kcal
Atomic # 8 Polarization: -86.89 SS G_CDS: -4.21 Total: -91.10 kcal
Atomic # 14 Polarization: 44.51 SS G_CDS: 1.84 Total: 46.35 kcal
Atomic # 16 Polarization: 103.24 SS G_CDS: -0.35 Total: 102.89 kcal
Total: -72.83 -3.58 -76.41 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330413953.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.474 kcal
(2) G-P(sol) polarization free energy of solvation -72.832 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds