Wall clock time and date at job start Wed Apr 1 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46646 * 2 1 4 4 O 1.42893 * 109.47075 * 119.99692 * 2 1 3 5 5 C 1.35651 * 116.99826 * 85.47587 * 4 2 1 6 6 C 1.39345 * 120.54089 * 354.59210 * 5 4 2 7 7 C 1.38299 * 118.43520 * 180.25783 * 6 5 4 8 8 C 1.38771 * 119.44872 * 359.46503 * 7 6 5 9 9 N 1.31368 * 121.06476 * 0.27074 * 8 7 6 10 10 C 1.32857 * 121.69792 * 0.02562 * 9 8 7 11 11 C 1.47830 * 119.78353 * 179.97438 * 10 9 8 12 12 O 1.21558 * 120.00338 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00085 * 0.02562 * 11 10 9 14 14 C 1.46502 * 120.00097 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47180 * 179.97438 * 14 13 11 16 16 C 1.53048 * 109.45734 * 295.02210 * 15 14 13 17 17 C 1.53194 * 109.31157 * 178.60097 * 16 15 14 18 18 N 1.46922 * 108.76403 * 54.65396 * 17 16 15 19 19 C 1.36941 * 120.63035 * 126.35910 * 18 17 16 20 20 H 1.07997 * 120.00180 * 208.73580 * 19 18 17 21 21 C 1.38816 * 119.99720 * 28.73071 * 19 18 17 22 22 N 1.31620 * 119.99561 * 17.04539 * 21 19 18 23 23 Si 1.86797 * 120.00355 * 197.04238 * 21 19 18 24 24 H 1.48503 * 109.47139 * 94.67006 * 23 21 19 25 25 H 1.48492 * 109.47209 * 214.67158 * 23 21 19 26 26 H 1.48505 * 109.46953 * 334.67631 * 23 21 19 27 27 C 1.46925 * 118.74190 * 306.38737 * 18 17 16 28 28 C 1.53039 * 109.45734 * 174.97095 * 15 14 13 29 29 H 1.08997 * 109.46638 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46697 * 300.00093 * 1 2 3 31 31 H 1.08998 * 109.46847 * 60.00096 * 1 2 3 32 32 H 1.08992 * 109.46892 * 239.99937 * 2 1 3 33 33 H 1.09006 * 109.46693 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47043 * 299.99250 * 3 2 1 35 35 H 1.08995 * 109.47057 * 60.00151 * 3 2 1 36 36 H 1.07991 * 120.78004 * 359.97438 * 6 5 4 37 37 H 1.08008 * 120.27691 * 179.73358 * 7 6 5 38 38 H 1.07998 * 119.46747 * 180.25639 * 8 7 6 39 39 H 0.97003 * 120.00077 * 359.97438 * 13 11 10 40 40 H 1.09003 * 109.47101 * 299.99482 * 14 13 11 41 41 H 1.08996 * 109.47660 * 59.99357 * 14 13 11 42 42 H 1.08993 * 109.46070 * 54.99621 * 15 14 13 43 43 H 1.08999 * 109.49743 * 298.57229 * 16 15 14 44 44 H 1.09000 * 109.49213 * 58.66560 * 16 15 14 45 45 H 1.08999 * 109.59436 * 294.87294 * 17 16 15 46 46 H 1.08994 * 109.69779 * 174.50476 * 17 16 15 47 47 H 0.97001 * 119.99940 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.58489 * 293.81500 * 27 18 17 49 49 H 1.09001 * 109.70064 * 173.46592 * 27 18 17 50 50 H 1.08995 * 109.49919 * 301.33341 * 28 15 14 51 51 H 1.09003 * 109.50043 * 61.40371 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1218 -2.0232 1.0947 6 6 1.6805 -2.7124 -0.0331 7 6 1.8143 -4.0887 -0.0581 8 6 2.3890 -4.7380 1.0253 9 7 2.8030 -4.0671 2.0761 10 6 2.6907 -2.7453 2.1491 11 6 3.1703 -2.0329 3.3524 12 8 3.0690 -0.8237 3.4236 13 7 3.7199 -2.7242 4.3705 14 6 4.1947 -2.0183 5.5632 15 6 4.7687 -3.0283 6.5589 16 6 3.6509 -3.9503 7.0515 17 6 4.2356 -4.9820 8.0213 18 7 4.9486 -4.2729 9.0924 19 6 4.6553 -4.5186 10.4073 20 1 4.7956 -3.7432 11.1459 21 6 4.1776 -5.7642 10.7908 22 7 4.3174 -6.7982 9.9884 23 14 3.3364 -5.9731 12.4455 24 1 1.8667 -5.8484 12.2729 25 1 3.6579 -7.3132 12.9985 26 1 3.8157 -4.9236 13.3804 27 6 5.9818 -3.2946 8.7261 28 6 5.3776 -2.2820 7.7482 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.2401 -2.1847 -0.8661 37 1 1.4783 -4.6530 -0.9156 38 1 2.4975 -5.8124 1.0043 39 1 3.8004 -3.6892 4.3138 40 1 4.9699 -1.3064 5.2795 41 1 3.3636 -1.4854 6.0250 42 1 5.5403 -3.6224 6.0694 43 1 2.8910 -3.3596 7.5630 44 1 3.2019 -4.4639 6.2013 45 1 4.9297 -5.6321 7.4886 46 1 3.4316 -5.5795 8.4508 47 1 3.9839 -7.6687 10.2564 48 1 6.8183 -3.8072 8.2510 49 1 6.3306 -2.7766 9.6195 50 1 6.1577 -1.6081 7.3941 51 1 4.6014 -1.7067 8.2528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362406159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:40 Heat of formation + Delta-G solvation = -25.960300 kcal Electronic energy + Delta-G solvation = -30618.398058 eV Core-core repulsion = 26518.425555 eV Total energy + Delta-G solvation = -4099.972503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.23808 -39.30604 -38.68081 -37.63749 -34.83415 -33.67333 -33.05413 -32.43863 -30.78566 -30.29881 -29.76515 -27.73053 -26.92274 -24.99444 -24.22824 -23.43752 -22.17072 -21.59428 -21.04943 -20.48897 -19.13205 -18.69784 -17.84359 -17.20065 -16.67409 -16.03015 -15.53538 -15.48735 -15.15922 -14.85091 -14.76610 -14.59011 -14.10249 -13.81024 -13.71742 -13.44214 -13.36111 -13.28731 -12.93854 -12.84700 -12.67329 -12.62579 -12.31340 -12.26088 -12.23497 -11.74830 -11.41485 -11.30776 -11.19943 -10.93706 -10.69184 -10.44770 -10.30962 -10.15576 -10.15016 -10.12467 -9.85810 -9.71859 -9.45991 -9.34767 -8.89099 -8.63794 -8.41449 -6.60019 -5.73715 -3.16227 0.41156 0.90191 2.70801 2.75750 3.22232 3.41264 3.48268 3.49624 3.69051 4.04423 4.18360 4.32995 4.38586 4.47918 4.54362 4.61645 4.67795 4.80646 5.10848 5.13266 5.21599 5.25109 5.32218 5.35775 5.37950 5.44446 5.50963 5.54539 5.59159 5.66861 5.71307 5.78946 5.97430 6.01803 6.05380 6.15985 6.25245 6.38340 6.54044 6.65475 6.68530 6.77103 6.85472 6.90853 6.94050 7.06307 7.41821 7.45116 7.71853 7.77843 7.85223 8.37030 8.51383 9.27299 9.90894 10.48314 11.34737 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002133 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.590711 B =13124.994822 C =13825.329553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 C -0.147 4.147 4 O -0.265 6.265 5 C 0.141 3.859 6 C -0.180 4.180 7 C -0.109 4.109 8 C 0.058 3.942 9 N -0.418 5.418 10 C 0.044 3.956 11 C 0.567 3.433 12 O -0.522 6.522 13 N -0.706 5.706 14 C 0.124 3.876 15 C -0.090 4.090 16 C -0.135 4.135 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.146 3.854 28 C -0.124 4.124 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.410 0.590 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.017 0.983 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.017 0.983 49 H 0.053 0.947 50 H 0.052 0.948 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 9.758 -26.419 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 C -0.204 4.204 4 O -0.175 6.175 5 C 0.090 3.910 6 C -0.207 4.207 7 C -0.129 4.129 8 C -0.103 4.103 9 N -0.129 5.129 10 C -0.095 4.095 11 C 0.352 3.648 12 O -0.397 6.397 13 N -0.358 5.358 14 C 0.001 3.999 15 C -0.109 4.109 16 C -0.174 4.174 17 C 0.046 3.954 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.020 3.980 28 C -0.164 4.164 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.183 0.817 39 H 0.247 0.753 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.749 10.229 -25.394 27.974 hybrid contribution -0.996 -0.459 -0.290 1.134 sum -6.745 9.770 -25.684 28.296 Atomic orbital electron populations 1.22398 0.94784 1.03011 1.03596 1.22613 0.94583 0.94406 0.87209 1.21825 1.02371 0.93034 1.03171 1.86486 1.79008 1.14516 1.37513 1.20021 0.92769 0.84586 0.93640 1.21786 1.04691 0.95578 0.98600 1.22217 0.96786 0.94106 0.99761 1.22736 0.97632 1.00782 0.89142 1.67641 1.13501 1.06088 1.25688 1.20785 1.03824 0.89405 0.95466 1.17597 0.78549 0.86570 0.82131 1.90822 1.55917 1.12901 1.80064 1.45903 1.60831 1.11885 1.17208 1.21583 0.98847 0.95049 0.84393 1.21304 0.98473 0.96218 0.94926 1.22249 0.97061 0.98874 0.99243 1.20749 0.96097 0.91126 0.87439 1.44054 1.39129 1.45822 1.02547 1.19205 1.39337 0.94960 0.84505 0.91759 1.25056 1.01906 0.95052 0.97723 1.70041 1.48298 0.99122 1.37261 0.86284 0.79706 0.77048 0.83811 1.21531 1.21836 1.20404 1.20879 0.90894 0.90567 0.95674 1.21984 0.99757 0.98390 0.96269 0.92053 0.90955 0.90791 0.91042 0.91468 0.90541 0.90998 0.83627 0.83985 0.81661 0.75335 0.91891 0.91579 0.91253 0.92588 0.93383 0.96472 0.89687 0.93726 0.96537 0.92796 0.92970 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 9.20 37.16 0.34 -0.83 16 2 C 0.07 0.54 2.85 -26.72 -0.08 0.47 16 3 C -0.15 -1.04 9.56 37.16 0.36 -0.68 16 4 O -0.26 -3.29 7.86 -40.60 -0.32 -3.61 16 5 C 0.14 1.68 6.62 -38.55 -0.26 1.42 16 6 C -0.18 -1.48 8.36 -39.15 -0.33 -1.81 16 7 C -0.11 -0.76 10.10 -39.36 -0.40 -1.16 16 8 C 0.06 0.52 11.17 -17.55 -0.20 0.32 16 9 N -0.42 -5.16 9.54 -9.71 -0.09 -5.25 16 10 C 0.04 0.61 6.76 -82.88 -0.56 0.05 16 11 C 0.57 9.15 7.80 -12.34 -0.10 9.05 16 12 O -0.52 -9.71 15.14 -16.63 -0.25 -9.96 16 13 N -0.71 -10.72 5.26 -61.25 -0.32 -11.04 16 14 C 0.12 1.94 5.06 -4.04 -0.02 1.92 16 15 C -0.09 -1.52 2.19 -90.57 -0.20 -1.72 16 16 C -0.13 -2.59 5.25 -26.61 -0.14 -2.73 16 17 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 18 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 19 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 20 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 22 N -0.90 -26.48 11.24 55.49 0.62 -25.86 16 23 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.15 3.10 6.51 -3.71 -0.02 3.07 16 28 C -0.12 -2.17 5.36 -26.61 -0.14 -2.32 16 29 H 0.06 0.40 7.00 -51.93 -0.36 0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.44 6.31 -51.93 -0.33 0.11 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.15 0.80 5.62 -52.49 -0.30 0.51 16 37 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 38 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.41 5.92 6.97 -40.82 -0.28 5.64 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.84 7.15 -51.93 -0.37 0.47 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 2.30 6.10 -51.93 -0.32 1.98 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -33.70 404.78 -10.05 -43.75 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.26 Total: 2.44 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.99 Total: 1.99 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.31 Total: -57.70 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.57 Total: -13.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.70 -10.05 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362406159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.794 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds