Wall clock time and date at job start Wed Apr 1 2020 04:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46646 * 2 1 4 4 O 1.42893 * 109.47075 * 119.99692 * 2 1 3 5 5 C 1.35651 * 116.99826 * 85.47587 * 4 2 1 6 6 C 1.39345 * 120.54089 * 354.59210 * 5 4 2 7 7 C 1.38299 * 118.43520 * 180.25783 * 6 5 4 8 8 C 1.38771 * 119.44872 * 359.46503 * 7 6 5 9 9 N 1.31368 * 121.06476 * 0.27074 * 8 7 6 10 10 C 1.32857 * 121.69792 * 0.02562 * 9 8 7 11 11 C 1.47830 * 119.78353 * 179.97438 * 10 9 8 12 12 O 1.21558 * 120.00338 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00085 * 0.02562 * 11 10 9 14 14 C 1.46502 * 120.00097 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47180 * 179.97438 * 14 13 11 16 16 C 1.53048 * 109.45734 * 295.02210 * 15 14 13 17 17 C 1.53194 * 109.31157 * 178.60097 * 16 15 14 18 18 N 1.46922 * 108.76403 * 54.65396 * 17 16 15 19 19 C 1.36941 * 120.63035 * 126.35910 * 18 17 16 20 20 H 1.07997 * 120.00180 * 208.73580 * 19 18 17 21 21 C 1.38816 * 119.99720 * 28.73071 * 19 18 17 22 22 N 1.31620 * 119.99561 * 17.04539 * 21 19 18 23 23 Si 1.86797 * 120.00355 * 197.04238 * 21 19 18 24 24 H 1.48503 * 109.47139 * 94.67006 * 23 21 19 25 25 H 1.48492 * 109.47209 * 214.67158 * 23 21 19 26 26 H 1.48505 * 109.46953 * 334.67631 * 23 21 19 27 27 C 1.46925 * 118.74190 * 306.38737 * 18 17 16 28 28 C 1.53039 * 109.45734 * 174.97095 * 15 14 13 29 29 H 1.08997 * 109.46638 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46697 * 300.00093 * 1 2 3 31 31 H 1.08998 * 109.46847 * 60.00096 * 1 2 3 32 32 H 1.08992 * 109.46892 * 239.99937 * 2 1 3 33 33 H 1.09006 * 109.46693 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47043 * 299.99250 * 3 2 1 35 35 H 1.08995 * 109.47057 * 60.00151 * 3 2 1 36 36 H 1.07991 * 120.78004 * 359.97438 * 6 5 4 37 37 H 1.08008 * 120.27691 * 179.73358 * 7 6 5 38 38 H 1.07998 * 119.46747 * 180.25639 * 8 7 6 39 39 H 0.97003 * 120.00077 * 359.97438 * 13 11 10 40 40 H 1.09003 * 109.47101 * 299.99482 * 14 13 11 41 41 H 1.08996 * 109.47660 * 59.99357 * 14 13 11 42 42 H 1.08993 * 109.46070 * 54.99621 * 15 14 13 43 43 H 1.08999 * 109.49743 * 298.57229 * 16 15 14 44 44 H 1.09000 * 109.49213 * 58.66560 * 16 15 14 45 45 H 1.08999 * 109.59436 * 294.87294 * 17 16 15 46 46 H 1.08994 * 109.69779 * 174.50476 * 17 16 15 47 47 H 0.97001 * 119.99940 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.58489 * 293.81500 * 27 18 17 49 49 H 1.09001 * 109.70064 * 173.46592 * 27 18 17 50 50 H 1.08995 * 109.49919 * 301.33341 * 28 15 14 51 51 H 1.09003 * 109.50043 * 61.40371 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1218 -2.0232 1.0947 6 6 1.6805 -2.7124 -0.0331 7 6 1.8143 -4.0887 -0.0581 8 6 2.3890 -4.7380 1.0253 9 7 2.8030 -4.0671 2.0761 10 6 2.6907 -2.7453 2.1491 11 6 3.1703 -2.0329 3.3524 12 8 3.0690 -0.8237 3.4236 13 7 3.7199 -2.7242 4.3705 14 6 4.1947 -2.0183 5.5632 15 6 4.7687 -3.0283 6.5589 16 6 3.6509 -3.9503 7.0515 17 6 4.2356 -4.9820 8.0213 18 7 4.9486 -4.2729 9.0924 19 6 4.6553 -4.5186 10.4073 20 1 4.7956 -3.7432 11.1459 21 6 4.1776 -5.7642 10.7908 22 7 4.3174 -6.7982 9.9884 23 14 3.3364 -5.9731 12.4455 24 1 1.8667 -5.8484 12.2729 25 1 3.6579 -7.3132 12.9985 26 1 3.8157 -4.9236 13.3804 27 6 5.9818 -3.2946 8.7261 28 6 5.3776 -2.2820 7.7482 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.2401 -2.1847 -0.8661 37 1 1.4783 -4.6530 -0.9156 38 1 2.4975 -5.8124 1.0043 39 1 3.8004 -3.6892 4.3138 40 1 4.9699 -1.3064 5.2795 41 1 3.3636 -1.4854 6.0250 42 1 5.5403 -3.6224 6.0694 43 1 2.8910 -3.3596 7.5630 44 1 3.2019 -4.4639 6.2013 45 1 4.9297 -5.6321 7.4886 46 1 3.4316 -5.5795 8.4508 47 1 3.9839 -7.6687 10.2564 48 1 6.8183 -3.8072 8.2510 49 1 6.3306 -2.7766 9.6195 50 1 6.1577 -1.6081 7.3941 51 1 4.6014 -1.7067 8.2528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362406159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:39 Heat of formation + Delta-G solvation = -46.709712 kcal Electronic energy + Delta-G solvation = -30619.297820 eV Core-core repulsion = 26518.425555 eV Total energy + Delta-G solvation = -4100.872265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.03155 -40.44310 -39.51333 -39.17993 -36.37847 -34.57784 -34.26186 -33.43513 -32.32656 -31.52874 -31.27838 -28.51761 -28.22606 -26.25135 -25.32692 -24.54200 -23.82896 -22.68381 -22.22074 -21.58668 -20.73394 -19.53909 -18.86613 -18.56931 -17.99037 -16.86282 -16.82116 -16.65605 -16.28907 -16.19457 -15.68532 -15.53112 -15.32012 -15.30227 -15.01139 -14.85339 -14.75444 -14.33452 -13.99836 -13.94490 -13.79011 -13.45457 -13.36124 -13.31508 -13.15299 -13.07128 -12.83453 -12.82391 -12.58025 -12.28157 -12.00888 -11.95493 -11.84686 -11.77641 -11.61763 -11.36988 -11.14303 -11.12197 -10.81508 -10.58912 -10.53215 -10.09130 -9.47533 -8.65743 -7.86481 -5.32079 -0.36183 0.21901 1.45989 1.47667 1.56750 1.75717 2.04432 2.15451 2.51622 2.82805 3.21984 3.27414 3.55856 3.71530 3.72005 3.78568 3.84328 3.93756 3.95007 4.03859 4.06807 4.12452 4.15606 4.47472 4.53261 4.54024 4.65634 4.67298 4.72644 4.74971 4.76577 4.80099 4.83666 4.91202 4.93128 4.99275 5.04228 5.17888 5.20596 5.24033 5.24973 5.28620 5.41515 5.42599 5.45577 5.56178 5.67015 5.78202 6.27334 6.40973 6.45652 6.81999 7.16458 7.20528 7.88196 8.40127 9.19793 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002133 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.590711 B =13124.994822 C =13825.329553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 C -0.146 4.146 4 O -0.298 6.298 5 C 0.130 3.870 6 C -0.175 4.175 7 C -0.085 4.085 8 C 0.051 3.949 9 N -0.442 5.442 10 C 0.001 3.999 11 C 0.563 3.437 12 O -0.558 6.558 13 N -0.705 5.705 14 C 0.136 3.864 15 C -0.078 4.078 16 C -0.119 4.119 17 C 0.179 3.821 18 N -0.612 5.612 19 C -0.262 4.262 20 H 0.065 0.935 21 C -0.052 4.052 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.141 3.859 28 C -0.114 4.114 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.177 0.823 37 H 0.189 0.811 38 H 0.194 0.806 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.063 0.937 45 H -0.001 1.001 46 H 0.049 0.951 47 H 0.250 0.750 48 H 0.016 0.984 49 H 0.054 0.946 50 H 0.085 0.915 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 10.011 -29.278 31.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.003 3.997 3 C -0.203 4.203 4 O -0.210 6.210 5 C 0.078 3.922 6 C -0.201 4.201 7 C -0.105 4.105 8 C -0.111 4.111 9 N -0.154 5.154 10 C -0.136 4.136 11 C 0.349 3.651 12 O -0.436 6.436 13 N -0.357 5.357 14 C 0.013 3.987 15 C -0.097 4.097 16 C -0.159 4.159 17 C 0.053 3.947 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.082 0.918 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.215 1.215 25 H -0.220 1.220 26 H -0.193 1.193 27 C 0.016 3.984 28 C -0.153 4.153 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.194 0.806 37 H 0.206 0.794 38 H 0.211 0.789 39 H 0.250 0.750 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.017 0.983 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.073 0.927 50 H 0.103 0.897 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.591 10.514 -28.252 30.857 hybrid contribution -0.723 -0.580 0.475 1.042 sum -7.314 9.934 -27.777 30.393 Atomic orbital electron populations 1.22377 0.93679 1.03248 1.03987 1.22949 0.95506 0.94454 0.86807 1.21870 1.01666 0.93026 1.03772 1.86454 1.79439 1.15156 1.39915 1.20220 0.92905 0.84688 0.94344 1.22172 1.03707 0.96218 0.98000 1.22729 0.93948 0.93738 1.00079 1.23383 0.96866 1.02080 0.88815 1.67553 1.14632 1.05623 1.27588 1.20456 1.07185 0.90318 0.95619 1.18067 0.77785 0.86372 0.82848 1.90780 1.57485 1.14372 1.80990 1.45864 1.60832 1.11961 1.17004 1.21363 0.98597 0.94529 0.84235 1.21156 0.97560 0.95952 0.95020 1.22021 0.97411 0.97976 0.98448 1.20549 0.94585 0.91828 0.87714 1.44336 1.40527 1.46582 1.02129 1.19519 1.38980 0.94980 0.85749 0.91765 1.25813 1.02870 0.94844 1.01206 1.70186 1.49448 0.99330 1.39026 0.85271 0.78378 0.76887 0.80052 1.21453 1.22021 1.19260 1.21047 0.90216 0.90422 0.96721 1.21858 1.00416 0.97667 0.95402 0.91854 0.92904 0.88019 0.88715 0.92601 0.87461 0.92813 0.80552 0.79400 0.78938 0.74965 0.91082 0.92594 0.90737 0.93645 0.91806 0.98251 0.93217 0.94131 0.96563 0.92696 0.89656 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.20 71.99 0.66 -1.29 16 2 C 0.06 0.84 2.85 30.60 0.09 0.93 16 3 C -0.15 -1.96 9.56 71.98 0.69 -1.27 16 4 O -0.30 -7.45 7.86 -68.68 -0.54 -7.99 16 5 C 0.13 2.99 6.62 22.94 0.15 3.15 16 6 C -0.17 -2.34 8.36 22.55 0.19 -2.15 16 7 C -0.09 -0.85 10.10 22.41 0.23 -0.62 16 8 C 0.05 0.77 11.17 84.89 0.95 1.72 16 9 N -0.44 -10.61 9.54 -184.63 -1.76 -12.37 16 10 C 0.00 0.01 6.76 41.93 0.28 0.30 16 11 C 0.56 18.73 7.80 86.78 0.68 19.40 16 12 O -0.56 -21.65 15.14 17.09 0.26 -21.39 16 13 N -0.70 -21.67 5.26 -465.98 -2.45 -24.13 16 14 C 0.14 4.21 5.06 86.38 0.44 4.65 16 15 C -0.08 -2.58 2.19 -10.76 -0.02 -2.60 16 16 C -0.12 -4.64 5.25 30.68 0.16 -4.48 16 17 C 0.18 8.85 5.30 86.36 0.46 9.31 16 18 N -0.61 -31.62 2.99 -699.10 -2.09 -33.71 16 19 C -0.26 -14.82 9.58 84.03 0.80 -14.02 16 20 H 0.06 3.56 7.89 -2.91 -0.02 3.53 16 21 C -0.05 -2.98 4.91 84.86 0.42 -2.56 16 22 N -0.93 -56.38 11.24 21.65 0.24 -56.14 16 23 Si 0.97 46.01 29.59 68.60 2.03 48.04 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.14 5.96 6.51 86.36 0.56 6.52 16 28 C -0.11 -3.87 5.36 30.67 0.16 -3.70 16 29 H 0.06 0.67 7.00 -2.39 -0.02 0.65 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.88 6.31 -2.39 -0.02 0.86 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.18 1.15 5.62 -2.92 -0.02 1.14 16 37 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 38 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.41 12.04 6.97 -92.71 -0.65 11.39 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 2.26 7.15 -2.39 -0.02 2.24 16 45 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H 0.05 2.80 6.10 -2.39 -0.01 2.78 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 48 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.05 2.27 7.94 -2.39 -0.02 2.25 16 50 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -77.59 404.78 2.87 -74.73 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.28 Total: 19.68 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.89 Total: 13.28 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -6.06 Total: -126.34 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.28 Total: -29.38 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -77.59 2.87 -74.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362406159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.016 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds