Wall clock time and date at job start Wed Apr 1 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 O 1.42899 * 109.47676 * 180.02562 * 3 2 1 5 5 C 1.35645 * 117.00097 * 179.97438 * 4 3 2 6 6 C 1.39340 * 120.54102 * 0.22510 * 5 4 3 7 7 C 1.38308 * 118.43544 * 180.28415 * 6 5 4 8 8 C 1.38759 * 119.44593 * 359.73607 * 7 6 5 9 9 N 1.31375 * 121.07099 * 0.02562 * 8 7 6 10 10 C 1.32859 * 121.69261 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78231 * 180.02562 * 10 9 8 12 12 O 1.21554 * 119.99789 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00182 * 359.97438 * 11 10 9 14 14 C 1.46498 * 120.00336 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47270 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.52500 * 305.07746 * 15 14 13 17 17 C 1.53039 * 109.49695 * 184.99585 * 15 14 13 18 18 C 1.53045 * 109.53823 * 178.68454 * 17 15 14 19 19 C 1.53190 * 109.31268 * 61.36420 * 18 17 15 20 20 N 1.46922 * 108.77625 * 305.36643 * 19 18 17 21 21 C 1.36943 * 120.63253 * 233.58592 * 20 19 18 22 22 H 1.07990 * 120.00256 * 152.29272 * 21 20 19 23 23 C 1.38815 * 119.99581 * 332.29987 * 21 20 19 24 24 N 1.31620 * 120.00321 * 342.60833 * 23 21 20 25 25 Si 1.86797 * 120.00011 * 162.60927 * 23 21 20 26 26 H 1.48498 * 109.47121 * 94.34418 * 25 23 21 27 27 H 1.48494 * 109.47249 * 214.34635 * 25 23 21 28 28 H 1.48498 * 109.46937 * 334.34891 * 25 23 21 29 29 C 1.46922 * 118.73992 * 53.86210 * 20 19 18 30 30 H 1.08996 * 109.47479 * 59.99874 * 1 2 3 31 31 H 1.09009 * 109.46641 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47298 * 299.99603 * 1 2 3 33 33 H 1.09001 * 109.47028 * 240.00024 * 2 1 3 34 34 H 1.08996 * 109.47479 * 120.00126 * 2 1 3 35 35 H 1.09001 * 109.47121 * 60.00081 * 3 2 1 36 36 H 1.09003 * 109.46919 * 300.00799 * 3 2 1 37 37 H 1.07999 * 120.78261 * 0.02562 * 6 5 4 38 38 H 1.08005 * 120.27362 * 179.75196 * 7 6 5 39 39 H 1.08007 * 119.46580 * 179.97438 * 8 7 6 40 40 H 0.97008 * 119.99966 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.47061 * 59.99821 * 14 13 11 42 42 H 1.09008 * 109.46594 * 299.99807 * 14 13 11 43 43 H 1.08998 * 109.45900 * 58.66537 * 17 15 14 44 44 H 1.08997 * 109.45267 * 298.69435 * 17 15 14 45 45 H 1.09000 * 109.49357 * 301.41438 * 18 17 15 46 46 H 1.09006 * 109.52292 * 181.33825 * 18 17 15 47 47 H 1.09003 * 109.58516 * 185.58004 * 19 18 17 48 48 H 1.09000 * 109.70365 * 65.22328 * 19 18 17 49 49 H 0.96992 * 120.00549 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.58771 * 65.92198 * 29 20 19 51 51 H 1.08998 * 109.58854 * 186.35641 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0847 2.6513 -0.0012 6 6 3.3368 3.8269 0.0035 7 6 4.0094 5.0354 -0.0034 8 6 5.3970 5.0438 -0.0091 9 7 6.0818 3.9226 -0.0086 10 6 5.4809 2.7377 -0.0021 11 6 6.2931 1.5024 -0.0012 12 8 5.7474 0.4163 0.0052 13 7 7.6386 1.5806 -0.0075 14 6 8.4435 0.3566 -0.0071 15 6 9.9289 0.7229 -0.0143 16 1 10.1378 1.3809 -0.8578 17 6 10.7685 -0.5505 -0.1396 18 6 12.2535 -0.1825 -0.1799 19 6 12.6363 0.5225 1.1251 20 7 11.7365 1.6664 1.3262 21 6 12.2406 2.9214 1.5413 22 1 11.6680 3.7902 1.2524 23 6 13.4878 3.0767 2.1307 24 7 14.0347 2.0755 2.7872 25 14 14.3899 4.7065 1.9922 26 1 14.0988 5.5366 3.1887 27 1 15.8513 4.4576 1.9060 28 1 13.9365 5.4210 0.7719 29 6 10.2855 1.4373 1.2982 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6765 1.9563 -0.8899 37 1 2.2573 3.7952 0.0081 38 1 3.4592 5.9648 -0.0041 39 1 5.9226 5.9873 -0.0149 40 1 8.0741 2.4474 -0.0122 41 1 8.2098 -0.2322 -0.8942 42 1 8.2177 -0.2264 0.8859 43 1 10.4991 -1.0742 -1.0568 44 1 10.5777 -1.1968 0.7171 45 1 12.4404 0.4839 -1.0218 46 1 12.8501 -1.0878 -0.2930 47 1 13.6661 0.8744 1.0619 48 1 12.5378 -0.1711 1.9602 49 1 14.9060 2.1841 3.1993 50 1 9.9973 0.8155 2.1458 51 1 9.7636 2.3929 1.3491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430672396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:40 Heat of formation + Delta-G solvation = -30.433912 kcal Electronic energy + Delta-G solvation = -30493.468141 eV Core-core repulsion = 26393.301648 eV Total energy + Delta-G solvation = -4100.166493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.11610 -39.16059 -38.53545 -37.60746 -34.73145 -34.29847 -33.05121 -32.51383 -30.87857 -30.37337 -30.06443 -27.08976 -25.93794 -25.21898 -24.28145 -23.21448 -22.08403 -21.84810 -20.96244 -20.42131 -19.11269 -18.53065 -17.74079 -17.21134 -16.72129 -16.58315 -15.48112 -15.41449 -15.33390 -14.78566 -14.75533 -14.62080 -14.21539 -14.05048 -13.75390 -13.51249 -13.37108 -13.28042 -13.01120 -12.70179 -12.51081 -12.33124 -12.24985 -12.11041 -12.07491 -11.96821 -11.38180 -11.20609 -11.05364 -10.97354 -10.65224 -10.42198 -10.26423 -10.16545 -10.12937 -10.11324 -9.86896 -9.71525 -9.45663 -9.34839 -8.85178 -8.59998 -8.41052 -6.61428 -5.74010 -3.15909 0.45918 0.95181 2.73626 2.80094 3.27212 3.40070 3.47236 3.49891 3.74228 4.09838 4.26151 4.39687 4.46546 4.51964 4.53045 4.69728 4.78466 4.83240 4.97403 5.04581 5.18459 5.22232 5.26818 5.37220 5.51646 5.54850 5.57514 5.61036 5.64664 5.68029 5.69538 5.81827 5.90718 6.03343 6.08334 6.10470 6.32898 6.41161 6.44667 6.65076 6.67581 6.77882 6.86853 6.92941 6.94530 7.05151 7.45610 7.48603 7.72863 7.83181 7.84877 8.42056 8.49900 9.26283 9.90059 10.47073 11.34317 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002361 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.622103 B =11858.253891 C =13417.877363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.270 6.270 5 C 0.138 3.862 6 C -0.178 4.178 7 C -0.109 4.109 8 C 0.059 3.941 9 N -0.416 5.416 10 C 0.047 3.953 11 C 0.568 3.432 12 O -0.523 6.523 13 N -0.706 5.706 14 C 0.128 3.872 15 C -0.117 4.117 16 H 0.074 0.926 17 C -0.099 4.099 18 C -0.141 4.141 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.250 4.250 22 H 0.065 0.935 23 C 0.000 4.000 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.153 3.847 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.167 0.833 40 H 0.412 0.588 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.019 0.981 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.464 1.209 -7.666 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.180 6.180 5 C 0.087 3.913 6 C -0.205 4.205 7 C -0.129 4.129 8 C -0.102 4.102 9 N -0.128 5.128 10 C -0.093 4.093 11 C 0.352 3.648 12 O -0.399 6.399 13 N -0.357 5.357 14 C 0.004 3.996 15 C -0.138 4.138 16 H 0.092 0.908 17 C -0.137 4.137 18 C -0.180 4.180 19 C 0.043 3.957 20 N -0.314 5.314 21 C -0.379 4.379 22 H 0.083 0.917 23 C -0.198 4.198 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.204 1.204 29 C 0.026 3.974 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.184 0.816 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.036 0.964 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.675 0.176 -7.567 25.810 hybrid contribution -0.417 1.571 0.040 1.626 sum -25.092 1.746 -7.527 26.255 Atomic orbital electron populations 1.21695 0.94286 1.02634 1.01996 1.21455 0.95681 0.94492 1.04401 1.23033 0.78733 0.99569 1.01205 1.86411 1.20705 1.24632 1.86272 1.20008 0.92273 0.85667 0.93358 1.21737 1.00974 0.91880 1.05902 1.22213 0.95815 0.98381 0.96489 1.22749 0.91326 0.96506 0.99576 1.67667 1.39869 0.97403 1.07839 1.20787 0.88542 0.93057 1.06874 1.17586 0.82398 0.87151 0.77650 1.90814 1.71838 1.27526 1.49684 1.45900 1.05345 1.11175 1.73315 1.21490 0.90388 0.85998 1.01742 1.22021 0.91341 0.98617 1.01799 0.90787 1.21340 0.96104 0.95939 1.00361 1.22166 0.94586 0.99505 1.01783 1.20794 0.96350 0.87827 0.90734 1.44061 0.98969 1.05482 1.82851 1.19181 1.01604 0.84002 1.33151 0.91680 1.25036 1.00024 0.97271 0.97467 1.70042 1.17552 1.31342 1.35792 0.86306 0.79154 0.83615 0.77866 1.21532 1.21636 1.20428 1.21000 0.86802 0.97162 0.92390 0.92476 0.91611 0.92446 0.90504 0.90443 0.91944 0.91998 0.83815 0.83975 0.81628 0.75156 0.91919 0.91514 0.93465 0.92495 0.92754 0.93244 0.89582 0.96491 0.93721 0.96357 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.93 6.30 -26.73 -0.17 -1.10 16 3 C 0.05 0.41 4.76 37.16 0.18 0.59 16 4 O -0.27 -3.47 8.20 -40.59 -0.33 -3.80 16 5 C 0.14 1.72 6.71 -38.56 -0.26 1.46 16 6 C -0.18 -1.56 9.13 -39.15 -0.36 -1.92 16 7 C -0.11 -0.83 10.10 -39.36 -0.40 -1.23 16 8 C 0.06 0.57 11.17 -17.55 -0.20 0.38 16 9 N -0.42 -5.50 9.54 -9.71 -0.09 -5.59 16 10 C 0.05 0.67 6.76 -82.88 -0.56 0.11 16 11 C 0.57 9.45 7.80 -12.34 -0.10 9.35 16 12 O -0.52 -9.89 15.14 -16.63 -0.25 -10.15 16 13 N -0.71 -11.19 5.32 -61.26 -0.33 -11.52 16 14 C 0.13 2.03 5.06 -4.05 -0.02 2.01 16 15 C -0.12 -2.04 2.39 -90.27 -0.22 -2.26 16 16 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.10 -1.70 5.16 -26.69 -0.14 -1.84 16 18 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 19 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 20 N -0.59 -14.92 2.99 -172.06 -0.51 -15.43 16 21 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 22 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 23 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 24 N -0.90 -26.46 11.19 55.49 0.62 -25.84 16 25 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C 0.15 3.24 5.63 -3.48 -0.02 3.22 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 36 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 37 H 0.14 0.83 6.46 -52.49 -0.34 0.49 16 38 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 39 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.41 6.39 7.05 -40.82 -0.29 6.10 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.05 1.10 7.16 -51.93 -0.37 0.73 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -33.47 408.46 -10.49 -43.96 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.42 Total: 2.97 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.29 Total: 2.46 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.31 Total: -58.37 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.58 Total: -13.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.47 -10.49 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430672396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.521 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds