Wall clock time and date at job start Wed Apr 1 2020 05:00:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52999 * 109.47179 * 2 1
4 4 O 1.42899 * 109.47676 * 180.02562 * 3 2 1
5 5 C 1.35645 * 117.00097 * 179.97438 * 4 3 2
6 6 C 1.39340 * 120.54102 * 0.22510 * 5 4 3
7 7 C 1.38308 * 118.43544 * 180.28415 * 6 5 4
8 8 C 1.38759 * 119.44593 * 359.73607 * 7 6 5
9 9 N 1.31375 * 121.07099 * 0.02562 * 8 7 6
10 10 C 1.32859 * 121.69261 * 359.97438 * 9 8 7
11 11 C 1.47835 * 119.78231 * 180.02562 * 10 9 8
12 12 O 1.21554 * 119.99789 * 179.97438 * 11 10 9
13 13 N 1.34773 * 120.00182 * 359.97438 * 11 10 9
14 14 C 1.46498 * 120.00336 * 180.02562 * 13 11 10
15 15 C 1.52996 * 109.47270 * 180.02562 * 14 13 11
16 16 H 1.08999 * 109.52500 * 305.07746 * 15 14 13
17 17 C 1.53039 * 109.49695 * 184.99585 * 15 14 13
18 18 C 1.53045 * 109.53823 * 178.68454 * 17 15 14
19 19 C 1.53190 * 109.31268 * 61.36420 * 18 17 15
20 20 N 1.46922 * 108.77625 * 305.36643 * 19 18 17
21 21 C 1.36943 * 120.63253 * 233.58592 * 20 19 18
22 22 H 1.07990 * 120.00256 * 152.29272 * 21 20 19
23 23 C 1.38815 * 119.99581 * 332.29987 * 21 20 19
24 24 N 1.31620 * 120.00321 * 342.60833 * 23 21 20
25 25 Si 1.86797 * 120.00011 * 162.60927 * 23 21 20
26 26 H 1.48498 * 109.47121 * 94.34418 * 25 23 21
27 27 H 1.48494 * 109.47249 * 214.34635 * 25 23 21
28 28 H 1.48498 * 109.46937 * 334.34891 * 25 23 21
29 29 C 1.46922 * 118.73992 * 53.86210 * 20 19 18
30 30 H 1.08996 * 109.47479 * 59.99874 * 1 2 3
31 31 H 1.09009 * 109.46641 * 180.02562 * 1 2 3
32 32 H 1.08996 * 109.47298 * 299.99603 * 1 2 3
33 33 H 1.09001 * 109.47028 * 240.00024 * 2 1 3
34 34 H 1.08996 * 109.47479 * 120.00126 * 2 1 3
35 35 H 1.09001 * 109.47121 * 60.00081 * 3 2 1
36 36 H 1.09003 * 109.46919 * 300.00799 * 3 2 1
37 37 H 1.07999 * 120.78261 * 0.02562 * 6 5 4
38 38 H 1.08005 * 120.27362 * 179.75196 * 7 6 5
39 39 H 1.08007 * 119.46580 * 179.97438 * 8 7 6
40 40 H 0.97008 * 119.99966 * 0.02562 * 13 11 10
41 41 H 1.08997 * 109.47061 * 59.99821 * 14 13 11
42 42 H 1.09008 * 109.46594 * 299.99807 * 14 13 11
43 43 H 1.08998 * 109.45900 * 58.66537 * 17 15 14
44 44 H 1.08997 * 109.45267 * 298.69435 * 17 15 14
45 45 H 1.09000 * 109.49357 * 301.41438 * 18 17 15
46 46 H 1.09006 * 109.52292 * 181.33825 * 18 17 15
47 47 H 1.09003 * 109.58516 * 185.58004 * 19 18 17
48 48 H 1.09000 * 109.70365 * 65.22328 * 19 18 17
49 49 H 0.96992 * 120.00549 * 180.02562 * 24 23 21
50 50 H 1.09004 * 109.58771 * 65.92198 * 29 20 19
51 51 H 1.08998 * 109.58854 * 186.35641 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4426 -0.0006
5 6 4.0847 2.6513 -0.0012
6 6 3.3368 3.8269 0.0035
7 6 4.0094 5.0354 -0.0034
8 6 5.3970 5.0438 -0.0091
9 7 6.0818 3.9226 -0.0086
10 6 5.4809 2.7377 -0.0021
11 6 6.2931 1.5024 -0.0012
12 8 5.7474 0.4163 0.0052
13 7 7.6386 1.5806 -0.0075
14 6 8.4435 0.3566 -0.0071
15 6 9.9289 0.7229 -0.0143
16 1 10.1378 1.3809 -0.8578
17 6 10.7685 -0.5505 -0.1396
18 6 12.2535 -0.1825 -0.1799
19 6 12.6363 0.5225 1.1251
20 7 11.7365 1.6664 1.3262
21 6 12.2406 2.9214 1.5413
22 1 11.6680 3.7902 1.2524
23 6 13.4878 3.0767 2.1307
24 7 14.0347 2.0755 2.7872
25 14 14.3899 4.7065 1.9922
26 1 14.0988 5.5366 3.1887
27 1 15.8513 4.4576 1.9060
28 1 13.9365 5.4210 0.7719
29 6 10.2855 1.4373 1.2982
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0278 0.0005
32 1 -0.3634 0.5137 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8899
35 1 1.6767 1.9563 0.8900
36 1 1.6765 1.9563 -0.8899
37 1 2.2573 3.7952 0.0081
38 1 3.4592 5.9648 -0.0041
39 1 5.9226 5.9873 -0.0149
40 1 8.0741 2.4474 -0.0122
41 1 8.2098 -0.2322 -0.8942
42 1 8.2177 -0.2264 0.8859
43 1 10.4991 -1.0742 -1.0568
44 1 10.5777 -1.1968 0.7171
45 1 12.4404 0.4839 -1.0218
46 1 12.8501 -1.0878 -0.2930
47 1 13.6661 0.8744 1.0619
48 1 12.5378 -0.1711 1.9602
49 1 14.9060 2.1841 3.1993
50 1 9.9973 0.8155 2.1458
51 1 9.7636 2.3929 1.3491
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000430672396.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:39
Heat of formation + Delta-G solvation = -50.806186 kcal
Electronic energy + Delta-G solvation = -30494.351549 eV
Core-core repulsion = 26393.301648 eV
Total energy + Delta-G solvation = -4101.049902 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.97261 -40.37132 -39.39055 -39.17102 -36.24171 -34.93735 -34.65236 -33.44618
-32.29772 -31.96187 -31.35361 -27.68701 -27.33544 -27.08612 -25.30842 -23.99752
-23.78930 -22.72831 -22.34252 -21.59253 -20.69826 -19.41662 -18.80791 -18.52609
-18.03220 -17.42592 -16.85073 -16.67558 -16.50372 -16.23902 -15.82601 -15.56809
-15.45890 -15.11863 -14.99874 -14.91892 -14.57071 -14.48616 -14.22307 -14.00021
-13.73398 -13.60327 -13.51347 -13.03664 -13.00444 -12.97756 -12.87476 -12.53648
-12.49359 -12.25926 -11.96796 -11.94848 -11.82813 -11.63366 -11.58959 -11.41067
-11.20044 -11.08283 -10.84451 -10.59775 -10.52145 -10.08943 -9.49192 -8.66992
-7.85769 -5.31264 -0.36544 0.21721 1.46995 1.48419 1.58988 1.75732
2.02214 2.15586 2.52226 2.82665 3.21934 3.28471 3.57216 3.59994
3.69887 3.91002 3.94717 3.99099 4.00165 4.02342 4.07486 4.15649
4.25338 4.41168 4.46864 4.50916 4.52839 4.56469 4.61785 4.75193
4.76029 4.86727 4.88307 4.91394 4.99878 5.01932 5.10730 5.12880
5.15981 5.23470 5.31002 5.32942 5.39076 5.45324 5.48872 5.57850
5.67687 5.79173 6.22743 6.39818 6.45716 6.81692 7.15964 7.20088
7.86990 8.39399 9.20478
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014263 B = 0.002361 C = 0.002086
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1962.622103 B =11858.253891 C =13417.877363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.124 4.124
3 C 0.043 3.957
4 O -0.303 6.303
5 C 0.126 3.874
6 C -0.172 4.172
7 C -0.085 4.085
8 C 0.051 3.949
9 N -0.444 5.444
10 C 0.003 3.997
11 C 0.563 3.437
12 O -0.557 6.557
13 N -0.706 5.706
14 C 0.138 3.862
15 C -0.099 4.099
16 H 0.074 0.926
17 C -0.096 4.096
18 C -0.129 4.129
19 C 0.173 3.827
20 N -0.609 5.609
21 C -0.260 4.260
22 H 0.067 0.933
23 C -0.054 4.054
24 N -0.936 5.936
25 Si 0.968 3.032
26 H -0.286 1.286
27 H -0.293 1.293
28 H -0.268 1.268
29 C 0.154 3.846
30 H 0.068 0.932
31 H 0.067 0.933
32 H 0.066 0.934
33 H 0.062 0.938
34 H 0.059 0.941
35 H 0.081 0.919
36 H 0.083 0.917
37 H 0.179 0.821
38 H 0.189 0.811
39 H 0.192 0.808
40 H 0.413 0.587
41 H 0.074 0.926
42 H 0.058 0.942
43 H 0.081 0.919
44 H 0.056 0.944
45 H 0.053 0.947
46 H 0.071 0.929
47 H 0.053 0.947
48 H -0.007 1.007
49 H 0.249 0.751
50 H 0.005 0.995
51 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.086 3.255 -9.074 29.694
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.161 4.161
3 C -0.032 4.032
4 O -0.214 6.214
5 C 0.075 3.925
6 C -0.198 4.198
7 C -0.105 4.105
8 C -0.112 4.112
9 N -0.156 5.156
10 C -0.134 4.134
11 C 0.350 3.650
12 O -0.436 6.436
13 N -0.357 5.357
14 C 0.014 3.986
15 C -0.119 4.119
16 H 0.093 0.907
17 C -0.134 4.134
18 C -0.168 4.168
19 C 0.047 3.953
20 N -0.332 5.332
21 C -0.390 4.390
22 H 0.085 0.915
23 C -0.249 4.249
24 N -0.582 5.582
25 Si 0.796 3.204
26 H -0.213 1.213
27 H -0.219 1.219
28 H -0.192 1.192
29 C 0.028 3.972
30 H 0.087 0.913
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.080 0.920
34 H 0.078 0.922
35 H 0.099 0.901
36 H 0.101 0.899
37 H 0.196 0.804
38 H 0.207 0.793
39 H 0.209 0.791
40 H 0.249 0.751
41 H 0.092 0.908
42 H 0.076 0.924
43 H 0.100 0.900
44 H 0.075 0.925
45 H 0.072 0.928
46 H 0.090 0.910
47 H 0.071 0.929
48 H 0.011 0.989
49 H 0.058 0.942
50 H 0.023 0.977
51 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -27.321 2.208 -8.992 28.847
hybrid contribution 0.286 1.012 0.519 1.173
sum -27.035 3.220 -8.472 28.514
Atomic orbital electron populations
1.21661 0.92027 1.03199 1.03039 1.21481 0.97532 0.94275 1.02860
1.23323 0.76737 1.00078 1.03020 1.86373 1.23076 1.25587 1.86385
1.20207 0.91940 0.86837 0.93494 1.22164 1.02525 0.90735 1.04365
1.22724 0.95045 0.99782 0.92934 1.23378 0.92838 0.96302 0.98633
1.67573 1.41125 0.97927 1.08952 1.20467 0.89365 0.92568 1.10983
1.18053 0.82447 0.87925 0.76607 1.90771 1.72375 1.29007 1.51405
1.45891 1.05465 1.11004 1.73361 1.21331 0.89231 0.86223 1.01850
1.21778 0.92413 0.98498 0.99230 0.90742 1.21338 0.94219 0.95762
1.02100 1.21997 0.96553 0.99793 0.98484 1.20650 0.94737 0.87378
0.92541 1.44329 1.00615 1.05136 1.83101 1.19521 1.01908 0.85136
1.32475 0.91482 1.25827 1.00897 1.00661 0.97535 1.70202 1.17641
1.33382 1.37011 0.85256 0.77451 0.79677 0.78046 1.21324 1.21903
1.19240 1.21075 0.84714 0.97389 0.94045 0.91294 0.91368 0.91448
0.91960 0.92169 0.90106 0.89889 0.80375 0.79334 0.79086 0.75062
0.90759 0.92403 0.90034 0.92538 0.92827 0.90999 0.92852 0.98895
0.94173 0.97679 0.93094
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.20 9.91 71.98 0.71 -0.49 16
2 C -0.12 -1.84 6.30 30.59 0.19 -1.65 16
3 C 0.04 0.64 4.76 71.98 0.34 0.98 16
4 O -0.30 -7.81 8.20 -68.61 -0.56 -8.37 16
5 C 0.13 3.05 6.71 22.93 0.15 3.21 16
6 C -0.17 -2.44 9.13 22.55 0.21 -2.23 16
7 C -0.09 -0.95 10.10 22.41 0.23 -0.72 16
8 C 0.05 0.86 11.17 84.89 0.95 1.81 16
9 N -0.44 -11.51 9.54 -184.62 -1.76 -13.27 16
10 C 0.00 0.08 6.76 41.93 0.28 0.36 16
11 C 0.56 19.46 7.80 86.78 0.68 20.14 16
12 O -0.56 -22.03 15.14 17.10 0.26 -21.77 16
13 N -0.71 -22.97 5.32 -465.99 -2.48 -25.45 16
14 C 0.14 4.39 5.06 86.38 0.44 4.83 16
15 C -0.10 -3.41 2.39 -10.57 -0.03 -3.44 16
16 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16
17 C -0.10 -3.16 5.16 30.62 0.16 -3.00 16
18 C -0.13 -4.91 6.08 30.67 0.19 -4.72 16
19 C 0.17 8.58 5.31 86.36 0.46 9.04 16
20 N -0.61 -31.47 2.99 -698.26 -2.09 -33.56 16
21 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16
22 H 0.07 3.66 7.89 -2.92 -0.02 3.63 16
23 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16
24 N -0.94 -56.64 11.19 21.65 0.24 -56.40 16
25 Si 0.97 45.54 29.59 68.60 2.03 47.57 16
26 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16
27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16
28 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16
29 C 0.15 6.65 5.63 86.51 0.49 7.13 16
30 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16
31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16
32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16
33 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16
34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
35 H 0.08 0.87 7.69 -2.39 -0.02 0.85 16
36 H 0.08 0.85 7.71 -2.39 -0.02 0.84 16
37 H 0.18 1.20 6.46 -2.91 -0.02 1.18 16
38 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16
39 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16
40 H 0.41 13.16 7.05 -92.70 -0.65 12.50 16
41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16
43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
46 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16
47 H 0.05 2.99 6.04 -2.39 -0.01 2.97 16
48 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16
49 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16
50 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16
51 H 0.05 2.18 7.16 -2.39 -0.02 2.16 16
Total: -1.00 -77.20 408.46 2.58 -74.62
By element:
Atomic # 1 Polarization: 21.59 SS G_CDS: 0.27 Total: 21.86 kcal
Atomic # 6 Polarization: 8.10 SS G_CDS: 6.67 Total: 14.76 kcal
Atomic # 7 Polarization: -122.59 SS G_CDS: -6.08 Total: -128.68 kcal
Atomic # 8 Polarization: -29.83 SS G_CDS: -0.30 Total: -30.14 kcal
Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal
Total: -77.20 2.58 -74.62 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000430672396.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.816 kcal
(2) G-P(sol) polarization free energy of solvation -77.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.384 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.806 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds