Wall clock time and date at job start Wed Apr 1 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 O 1.42899 * 109.47676 * 180.02562 * 3 2 1 5 5 C 1.35645 * 117.00097 * 179.97438 * 4 3 2 6 6 C 1.39340 * 120.54102 * 0.22510 * 5 4 3 7 7 C 1.38308 * 118.43544 * 180.28415 * 6 5 4 8 8 C 1.38759 * 119.44593 * 359.73607 * 7 6 5 9 9 N 1.31375 * 121.07099 * 0.02562 * 8 7 6 10 10 C 1.32859 * 121.69261 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78231 * 180.02562 * 10 9 8 12 12 O 1.21554 * 119.99789 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00182 * 359.97438 * 11 10 9 14 14 C 1.46498 * 120.00336 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47270 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.52500 * 305.07746 * 15 14 13 17 17 C 1.53039 * 109.49695 * 184.99585 * 15 14 13 18 18 C 1.53045 * 109.53823 * 178.68454 * 17 15 14 19 19 C 1.53190 * 109.31268 * 61.36420 * 18 17 15 20 20 N 1.46922 * 108.77625 * 305.36643 * 19 18 17 21 21 C 1.36943 * 120.63253 * 233.58592 * 20 19 18 22 22 H 1.07990 * 120.00256 * 152.29272 * 21 20 19 23 23 C 1.38815 * 119.99581 * 332.29987 * 21 20 19 24 24 N 1.31620 * 120.00321 * 342.60833 * 23 21 20 25 25 Si 1.86797 * 120.00011 * 162.60927 * 23 21 20 26 26 H 1.48498 * 109.47121 * 94.34418 * 25 23 21 27 27 H 1.48494 * 109.47249 * 214.34635 * 25 23 21 28 28 H 1.48498 * 109.46937 * 334.34891 * 25 23 21 29 29 C 1.46922 * 118.73992 * 53.86210 * 20 19 18 30 30 H 1.08996 * 109.47479 * 59.99874 * 1 2 3 31 31 H 1.09009 * 109.46641 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47298 * 299.99603 * 1 2 3 33 33 H 1.09001 * 109.47028 * 240.00024 * 2 1 3 34 34 H 1.08996 * 109.47479 * 120.00126 * 2 1 3 35 35 H 1.09001 * 109.47121 * 60.00081 * 3 2 1 36 36 H 1.09003 * 109.46919 * 300.00799 * 3 2 1 37 37 H 1.07999 * 120.78261 * 0.02562 * 6 5 4 38 38 H 1.08005 * 120.27362 * 179.75196 * 7 6 5 39 39 H 1.08007 * 119.46580 * 179.97438 * 8 7 6 40 40 H 0.97008 * 119.99966 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.47061 * 59.99821 * 14 13 11 42 42 H 1.09008 * 109.46594 * 299.99807 * 14 13 11 43 43 H 1.08998 * 109.45900 * 58.66537 * 17 15 14 44 44 H 1.08997 * 109.45267 * 298.69435 * 17 15 14 45 45 H 1.09000 * 109.49357 * 301.41438 * 18 17 15 46 46 H 1.09006 * 109.52292 * 181.33825 * 18 17 15 47 47 H 1.09003 * 109.58516 * 185.58004 * 19 18 17 48 48 H 1.09000 * 109.70365 * 65.22328 * 19 18 17 49 49 H 0.96992 * 120.00549 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.58771 * 65.92198 * 29 20 19 51 51 H 1.08998 * 109.58854 * 186.35641 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0847 2.6513 -0.0012 6 6 3.3368 3.8269 0.0035 7 6 4.0094 5.0354 -0.0034 8 6 5.3970 5.0438 -0.0091 9 7 6.0818 3.9226 -0.0086 10 6 5.4809 2.7377 -0.0021 11 6 6.2931 1.5024 -0.0012 12 8 5.7474 0.4163 0.0052 13 7 7.6386 1.5806 -0.0075 14 6 8.4435 0.3566 -0.0071 15 6 9.9289 0.7229 -0.0143 16 1 10.1378 1.3809 -0.8578 17 6 10.7685 -0.5505 -0.1396 18 6 12.2535 -0.1825 -0.1799 19 6 12.6363 0.5225 1.1251 20 7 11.7365 1.6664 1.3262 21 6 12.2406 2.9214 1.5413 22 1 11.6680 3.7902 1.2524 23 6 13.4878 3.0767 2.1307 24 7 14.0347 2.0755 2.7872 25 14 14.3899 4.7065 1.9922 26 1 14.0988 5.5366 3.1887 27 1 15.8513 4.4576 1.9060 28 1 13.9365 5.4210 0.7719 29 6 10.2855 1.4373 1.2982 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6765 1.9563 -0.8899 37 1 2.2573 3.7952 0.0081 38 1 3.4592 5.9648 -0.0041 39 1 5.9226 5.9873 -0.0149 40 1 8.0741 2.4474 -0.0122 41 1 8.2098 -0.2322 -0.8942 42 1 8.2177 -0.2264 0.8859 43 1 10.4991 -1.0742 -1.0568 44 1 10.5777 -1.1968 0.7171 45 1 12.4404 0.4839 -1.0218 46 1 12.8501 -1.0878 -0.2930 47 1 13.6661 0.8744 1.0619 48 1 12.5378 -0.1711 1.9602 49 1 14.9060 2.1841 3.1993 50 1 9.9973 0.8155 2.1458 51 1 9.7636 2.3929 1.3491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430672396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:39 Heat of formation + Delta-G solvation = -50.806186 kcal Electronic energy + Delta-G solvation = -30494.351549 eV Core-core repulsion = 26393.301648 eV Total energy + Delta-G solvation = -4101.049902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.97261 -40.37132 -39.39055 -39.17102 -36.24171 -34.93735 -34.65236 -33.44618 -32.29772 -31.96187 -31.35361 -27.68701 -27.33544 -27.08612 -25.30842 -23.99752 -23.78930 -22.72831 -22.34252 -21.59253 -20.69826 -19.41662 -18.80791 -18.52609 -18.03220 -17.42592 -16.85073 -16.67558 -16.50372 -16.23902 -15.82601 -15.56809 -15.45890 -15.11863 -14.99874 -14.91892 -14.57071 -14.48616 -14.22307 -14.00021 -13.73398 -13.60327 -13.51347 -13.03664 -13.00444 -12.97756 -12.87476 -12.53648 -12.49359 -12.25926 -11.96796 -11.94848 -11.82813 -11.63366 -11.58959 -11.41067 -11.20044 -11.08283 -10.84451 -10.59775 -10.52145 -10.08943 -9.49192 -8.66992 -7.85769 -5.31264 -0.36544 0.21721 1.46995 1.48419 1.58988 1.75732 2.02214 2.15586 2.52226 2.82665 3.21934 3.28471 3.57216 3.59994 3.69887 3.91002 3.94717 3.99099 4.00165 4.02342 4.07486 4.15649 4.25338 4.41168 4.46864 4.50916 4.52839 4.56469 4.61785 4.75193 4.76029 4.86727 4.88307 4.91394 4.99878 5.01932 5.10730 5.12880 5.15981 5.23470 5.31002 5.32942 5.39076 5.45324 5.48872 5.57850 5.67687 5.79173 6.22743 6.39818 6.45716 6.81692 7.15964 7.20088 7.86990 8.39399 9.20478 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002361 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.622103 B =11858.253891 C =13417.877363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.043 3.957 4 O -0.303 6.303 5 C 0.126 3.874 6 C -0.172 4.172 7 C -0.085 4.085 8 C 0.051 3.949 9 N -0.444 5.444 10 C 0.003 3.997 11 C 0.563 3.437 12 O -0.557 6.557 13 N -0.706 5.706 14 C 0.138 3.862 15 C -0.099 4.099 16 H 0.074 0.926 17 C -0.096 4.096 18 C -0.129 4.129 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.260 4.260 22 H 0.067 0.933 23 C -0.054 4.054 24 N -0.936 5.936 25 Si 0.968 3.032 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.268 1.268 29 C 0.154 3.846 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.179 0.821 38 H 0.189 0.811 39 H 0.192 0.808 40 H 0.413 0.587 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.053 0.947 48 H -0.007 1.007 49 H 0.249 0.751 50 H 0.005 0.995 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.086 3.255 -9.074 29.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.032 4.032 4 O -0.214 6.214 5 C 0.075 3.925 6 C -0.198 4.198 7 C -0.105 4.105 8 C -0.112 4.112 9 N -0.156 5.156 10 C -0.134 4.134 11 C 0.350 3.650 12 O -0.436 6.436 13 N -0.357 5.357 14 C 0.014 3.986 15 C -0.119 4.119 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.168 4.168 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.390 4.390 22 H 0.085 0.915 23 C -0.249 4.249 24 N -0.582 5.582 25 Si 0.796 3.204 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.192 1.192 29 C 0.028 3.972 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.196 0.804 38 H 0.207 0.793 39 H 0.209 0.791 40 H 0.249 0.751 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.011 0.989 49 H 0.058 0.942 50 H 0.023 0.977 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.321 2.208 -8.992 28.847 hybrid contribution 0.286 1.012 0.519 1.173 sum -27.035 3.220 -8.472 28.514 Atomic orbital electron populations 1.21661 0.92027 1.03199 1.03039 1.21481 0.97532 0.94275 1.02860 1.23323 0.76737 1.00078 1.03020 1.86373 1.23076 1.25587 1.86385 1.20207 0.91940 0.86837 0.93494 1.22164 1.02525 0.90735 1.04365 1.22724 0.95045 0.99782 0.92934 1.23378 0.92838 0.96302 0.98633 1.67573 1.41125 0.97927 1.08952 1.20467 0.89365 0.92568 1.10983 1.18053 0.82447 0.87925 0.76607 1.90771 1.72375 1.29007 1.51405 1.45891 1.05465 1.11004 1.73361 1.21331 0.89231 0.86223 1.01850 1.21778 0.92413 0.98498 0.99230 0.90742 1.21338 0.94219 0.95762 1.02100 1.21997 0.96553 0.99793 0.98484 1.20650 0.94737 0.87378 0.92541 1.44329 1.00615 1.05136 1.83101 1.19521 1.01908 0.85136 1.32475 0.91482 1.25827 1.00897 1.00661 0.97535 1.70202 1.17641 1.33382 1.37011 0.85256 0.77451 0.79677 0.78046 1.21324 1.21903 1.19240 1.21075 0.84714 0.97389 0.94045 0.91294 0.91368 0.91448 0.91960 0.92169 0.90106 0.89889 0.80375 0.79334 0.79086 0.75062 0.90759 0.92403 0.90034 0.92538 0.92827 0.90999 0.92852 0.98895 0.94173 0.97679 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.12 -1.84 6.30 30.59 0.19 -1.65 16 3 C 0.04 0.64 4.76 71.98 0.34 0.98 16 4 O -0.30 -7.81 8.20 -68.61 -0.56 -8.37 16 5 C 0.13 3.05 6.71 22.93 0.15 3.21 16 6 C -0.17 -2.44 9.13 22.55 0.21 -2.23 16 7 C -0.09 -0.95 10.10 22.41 0.23 -0.72 16 8 C 0.05 0.86 11.17 84.89 0.95 1.81 16 9 N -0.44 -11.51 9.54 -184.62 -1.76 -13.27 16 10 C 0.00 0.08 6.76 41.93 0.28 0.36 16 11 C 0.56 19.46 7.80 86.78 0.68 20.14 16 12 O -0.56 -22.03 15.14 17.10 0.26 -21.77 16 13 N -0.71 -22.97 5.32 -465.99 -2.48 -25.45 16 14 C 0.14 4.39 5.06 86.38 0.44 4.83 16 15 C -0.10 -3.41 2.39 -10.57 -0.03 -3.44 16 16 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 17 C -0.10 -3.16 5.16 30.62 0.16 -3.00 16 18 C -0.13 -4.91 6.08 30.67 0.19 -4.72 16 19 C 0.17 8.58 5.31 86.36 0.46 9.04 16 20 N -0.61 -31.47 2.99 -698.26 -2.09 -33.56 16 21 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16 22 H 0.07 3.66 7.89 -2.92 -0.02 3.63 16 23 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 24 N -0.94 -56.64 11.19 21.65 0.24 -56.40 16 25 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 29 C 0.15 6.65 5.63 86.51 0.49 7.13 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 0.87 7.69 -2.39 -0.02 0.85 16 36 H 0.08 0.85 7.71 -2.39 -0.02 0.84 16 37 H 0.18 1.20 6.46 -2.91 -0.02 1.18 16 38 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.41 13.16 7.05 -92.70 -0.65 12.50 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.05 2.99 6.04 -2.39 -0.01 2.97 16 48 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 49 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 50 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.05 2.18 7.16 -2.39 -0.02 2.16 16 Total: -1.00 -77.20 408.46 2.58 -74.62 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.27 Total: 21.86 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.67 Total: 14.76 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -6.08 Total: -128.68 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.30 Total: -30.14 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.20 2.58 -74.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430672396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.816 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds