Wall clock time and date at job start Wed Apr 1 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47219 * 2 1 4 4 O 1.42894 * 109.47342 * 239.99499 * 2 1 3 5 5 C 1.35723 * 117.00271 * 274.01642 * 4 2 1 6 6 C 1.39225 * 120.38255 * 5.21378 * 5 4 2 7 7 C 1.38319 * 118.44750 * 179.97438 * 6 5 4 8 8 C 1.39471 * 119.13338 * 0.02562 * 7 6 5 9 9 C 1.47919 * 119.66039 * 179.97438 * 8 7 6 10 10 O 1.21551 * 120.00014 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00247 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99900 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46868 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.49875 * 305.06421 * 13 12 11 15 15 C 1.53042 * 109.49457 * 184.99870 * 13 12 11 16 16 C 1.53045 * 109.53616 * 178.68555 * 15 13 12 17 17 C 1.53198 * 109.31109 * 61.36460 * 16 15 13 18 18 N 1.46927 * 108.77638 * 305.36448 * 17 16 15 19 19 C 1.36935 * 120.63095 * 233.58656 * 18 17 16 20 20 H 1.08000 * 119.99767 * 153.07986 * 19 18 17 21 21 C 1.38804 * 120.00112 * 333.07808 * 19 18 17 22 22 N 1.31625 * 120.00190 * 343.87349 * 21 19 18 23 23 Si 1.86805 * 119.99962 * 163.87641 * 21 19 18 24 24 H 1.48494 * 109.47430 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46950 * 120.00349 * 23 21 19 26 26 H 1.48505 * 109.46735 * 239.99783 * 23 21 19 27 27 C 1.46928 * 118.73589 * 53.61055 * 18 17 16 28 28 N 1.32798 * 120.68201 * 359.97438 * 8 7 6 29 29 C 1.31380 * 121.69525 * 359.76554 * 28 8 7 30 30 H 1.09007 * 109.47233 * 59.99831 * 1 2 3 31 31 H 1.08990 * 109.47520 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47109 * 300.00507 * 1 2 3 33 33 H 1.08999 * 109.47132 * 119.99523 * 2 1 3 34 34 H 1.08992 * 109.47359 * 59.99742 * 3 2 1 35 35 H 1.09004 * 109.46578 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47051 * 299.99418 * 3 2 1 37 37 H 1.08005 * 120.77566 * 359.95480 * 6 5 4 38 38 H 1.08002 * 120.43313 * 179.97438 * 7 6 5 39 39 H 0.96996 * 119.99685 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47400 * 299.99188 * 12 11 9 41 41 H 1.09004 * 109.47014 * 59.99820 * 12 11 9 42 42 H 1.09001 * 109.46094 * 298.70226 * 15 13 12 43 43 H 1.08999 * 109.46186 * 58.68433 * 15 13 12 44 44 H 1.08995 * 109.49915 * 181.31362 * 16 15 13 45 45 H 1.09000 * 109.49565 * 301.38378 * 16 15 13 46 46 H 1.08991 * 109.58615 * 65.15541 * 17 16 15 47 47 H 1.08997 * 109.58343 * 185.57885 * 17 16 15 48 48 H 0.96995 * 119.99736 * 179.97438 * 22 21 19 49 49 H 1.09008 * 109.58615 * 186.60307 * 27 18 17 50 50 H 1.09002 * 109.58937 * 66.18128 * 27 18 17 51 51 H 1.08002 * 119.59700 * 180.24795 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1666 5 6 2.1319 -2.0230 -1.0910 6 6 1.7032 -2.7076 0.0430 7 6 1.8498 -4.0825 0.0773 8 6 2.4188 -4.7322 -1.0178 9 6 2.5817 -6.2022 -0.9933 10 8 2.2208 -6.8376 -0.0220 11 7 3.1312 -6.8371 -2.0477 12 6 3.2919 -8.2930 -2.0236 13 6 3.9350 -8.7568 -3.3322 14 1 3.3442 -8.3980 -4.1750 15 6 3.9893 -10.2860 -3.3607 16 6 4.6025 -10.7517 -4.6833 17 6 6.0329 -10.2148 -4.7955 18 7 6.0052 -8.7559 -4.6238 19 6 6.5725 -7.9324 -5.5594 20 1 6.2050 -6.9248 -5.6857 21 6 7.6200 -8.3927 -6.3453 22 7 8.2772 -9.4783 -5.9959 23 14 8.0969 -7.4715 -7.8988 24 1 7.2094 -6.2930 -8.0677 25 1 9.5072 -7.0186 -7.7925 26 1 7.9530 -8.3711 -9.0716 27 6 5.3578 -8.1973 -3.4290 28 7 2.8159 -4.0448 -2.0824 29 6 2.6862 -2.7391 -2.1486 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.2667 -2.1774 0.8766 38 1 1.5287 -4.6456 0.9412 39 1 3.4195 -6.3300 -2.8226 40 1 3.9294 -8.5744 -1.1854 41 1 2.3155 -8.7645 -1.9118 42 1 4.6002 -10.6431 -2.5316 43 1 2.9801 -10.6871 -3.2674 44 1 4.6195 -11.8412 -4.7128 45 1 4.0057 -10.3746 -5.5137 46 1 6.6531 -10.6624 -4.0190 47 1 6.4391 -10.4596 -5.7769 48 1 9.0089 -9.8001 -6.5454 49 1 5.3186 -7.1109 -3.5088 50 1 5.9230 -8.4804 -2.5410 51 1 3.0172 -2.2143 -3.0327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444787735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:53 Heat of formation + Delta-G solvation = -29.404097 kcal Electronic energy + Delta-G solvation = -30109.955949 eV Core-core repulsion = 26009.834112 eV Total energy + Delta-G solvation = -4100.121837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21050 -39.76450 -38.51077 -37.63890 -34.82201 -33.87537 -33.04146 -32.53081 -30.99057 -30.39456 -29.93619 -27.87098 -25.90021 -25.24667 -24.62607 -23.66849 -22.15760 -21.87405 -20.95222 -20.44273 -19.14090 -18.84005 -17.90075 -17.22312 -16.60168 -16.08399 -15.70299 -15.41398 -15.22981 -14.92103 -14.81219 -14.54945 -14.27207 -14.06149 -13.74271 -13.60373 -13.37748 -13.33994 -12.97296 -12.83712 -12.74997 -12.71754 -12.41131 -12.28353 -12.14839 -12.11131 -11.53534 -11.32723 -11.25147 -10.97230 -10.69356 -10.43270 -10.35471 -10.17594 -10.15721 -10.12922 -9.88058 -9.79444 -9.50568 -9.37886 -8.96693 -8.68333 -8.43016 -6.64154 -5.74480 -3.16986 0.48073 0.85582 2.54699 2.68682 3.22851 3.39561 3.47356 3.49697 3.69071 4.04323 4.10979 4.25089 4.29764 4.42133 4.51719 4.52745 4.75312 4.79045 4.97986 5.11727 5.13882 5.15434 5.20504 5.34580 5.44993 5.48782 5.50532 5.52339 5.57240 5.63169 5.65582 5.68063 5.87191 5.94477 6.01312 6.05513 6.28773 6.37799 6.42323 6.56093 6.65205 6.74735 6.78826 6.83411 6.90904 7.01664 7.41416 7.45836 7.72955 7.74479 7.83508 8.27415 8.48622 9.25297 9.88745 10.44760 11.33525 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.002269 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.812210 B =12338.700230 C =14353.122796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.299 6.299 5 C 0.104 3.896 6 C -0.180 4.180 7 C -0.068 4.068 8 C 0.038 3.962 9 C 0.572 3.428 10 O -0.545 6.545 11 N -0.702 5.702 12 C 0.125 3.875 13 C -0.118 4.118 14 H 0.074 0.926 15 C -0.099 4.099 16 C -0.142 4.142 17 C 0.167 3.833 18 N -0.592 5.592 19 C -0.248 4.248 20 H 0.067 0.933 21 C -0.001 4.001 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.153 3.847 28 N -0.414 5.414 29 C 0.078 3.922 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.016 0.984 47 H 0.090 0.910 48 H 0.252 0.748 49 H 0.052 0.948 50 H 0.018 0.982 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.239 16.856 13.180 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.017 3.983 3 C -0.207 4.207 4 O -0.211 6.211 5 C 0.055 3.945 6 C -0.206 4.206 7 C -0.089 4.089 8 C -0.099 4.099 9 C 0.356 3.644 10 O -0.423 6.423 11 N -0.352 5.352 12 C 0.002 3.998 13 C -0.138 4.138 14 H 0.092 0.908 15 C -0.138 4.138 16 C -0.181 4.181 17 C 0.042 3.958 18 N -0.314 5.314 19 C -0.377 4.377 20 H 0.084 0.916 21 C -0.199 4.199 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.026 3.974 28 N -0.126 5.126 29 C -0.085 4.085 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.108 0.892 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.036 0.964 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.921 15.972 12.924 25.993 hybrid contribution -0.012 1.118 -0.232 1.142 sum -15.933 17.090 12.692 26.590 Atomic orbital electron populations 1.22393 0.94642 1.03283 1.03566 1.22575 0.94625 0.94001 0.87121 1.21870 1.02383 0.93086 1.03331 1.86132 1.80356 1.15702 1.38898 1.20447 0.94806 0.83921 0.95319 1.21722 1.04890 0.95007 0.98954 1.21936 0.94517 0.93673 0.98792 1.21099 1.02187 0.94683 0.91951 1.17708 0.78093 0.85430 0.83124 1.90769 1.51172 1.66710 1.33640 1.45936 1.60765 1.08925 1.19610 1.21538 1.00482 0.78638 0.99163 1.21955 0.99630 0.96953 0.95289 0.90757 1.21345 0.99492 0.94003 0.98911 1.22179 1.00969 0.98766 0.96192 1.20847 0.90040 0.82861 1.02097 1.44066 1.65073 1.02030 1.20235 1.19248 1.10503 0.96606 1.11389 0.91553 1.25027 0.95945 0.98366 1.00570 1.70037 1.21974 1.25006 1.37906 0.86221 0.77928 0.79182 0.83455 1.20228 1.21805 1.21641 1.20912 0.89698 0.96459 0.90319 1.67636 1.12816 1.07655 1.24482 1.22294 0.99377 0.88728 0.98067 0.91099 0.91794 0.90673 0.90606 0.90293 0.91388 0.91197 0.83615 0.83157 0.74937 0.91359 0.91769 0.92481 0.93456 0.93224 0.92762 0.96557 0.89152 0.93752 0.92935 0.96378 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 9.21 37.15 0.34 -0.50 16 2 C 0.07 0.41 2.84 -26.73 -0.08 0.33 16 3 C -0.15 -0.64 9.56 37.16 0.36 -0.29 16 4 O -0.30 -2.53 9.80 -18.87 -0.18 -2.72 16 5 C 0.10 0.99 6.64 -38.84 -0.26 0.73 16 6 C -0.18 -1.57 8.37 -39.19 -0.33 -1.90 16 7 C -0.07 -0.74 9.62 -39.09 -0.38 -1.12 16 8 C 0.04 0.51 6.74 -83.03 -0.56 -0.05 16 9 C 0.57 8.82 7.80 -12.30 -0.10 8.73 16 10 O -0.55 -9.55 16.31 5.32 0.09 -9.47 16 11 N -0.70 -10.60 5.32 -61.22 -0.33 -10.92 16 12 C 0.13 1.92 5.07 -4.04 -0.02 1.90 16 13 C -0.12 -2.01 2.37 -90.50 -0.21 -2.22 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.10 -1.67 5.17 -26.69 -0.14 -1.81 16 16 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 17 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16 18 N -0.59 -14.81 3.00 -172.32 -0.52 -15.32 16 19 C -0.25 -6.79 9.60 -15.06 -0.14 -6.94 16 20 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 21 C 0.00 -0.03 4.95 -17.43 -0.09 -0.12 16 22 N -0.90 -26.38 11.05 55.49 0.61 -25.77 16 23 Si 0.90 21.80 29.58 -169.99 -5.03 16.77 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.15 3.18 5.60 -3.71 -0.02 3.16 16 28 N -0.41 -5.39 9.52 -9.68 -0.09 -5.49 16 29 C 0.08 0.84 11.14 -17.37 -0.19 0.65 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 7.07 -51.93 -0.37 -0.03 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.37 6.26 -51.93 -0.33 0.04 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.15 0.86 5.63 -52.48 -0.30 0.57 16 38 H 0.15 1.50 7.63 -52.49 -0.40 1.10 16 39 H 0.41 6.17 7.03 -40.82 -0.29 5.88 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.43 5.93 -51.93 -0.31 2.13 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.05 1.07 7.14 -51.92 -0.37 0.70 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 406.93 15.07 6.13 6.13 Total: -1.00 -32.16 406.93 -9.56 -41.71 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.24 Total: 3.39 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.00 Total: 1.69 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.32 Total: -57.50 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.10 Total: -12.18 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.16 -9.56 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444787735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.309 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds