Wall clock time and date at job start Wed Apr 1 2020 05:05:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52995 * 109.47180 * 2 1
4 4 O 1.42902 * 109.47207 * 180.02562 * 3 2 1
5 5 C 1.35648 * 116.99949 * 180.02562 * 4 3 2
6 6 C 1.39346 * 120.54304 * 0.26552 * 5 4 3
7 7 C 1.38299 * 118.43663 * 180.28597 * 6 5 4
8 8 C 1.38768 * 119.44584 * 359.73091 * 7 6 5
9 9 N 1.31376 * 121.06911 * 359.97438 * 8 7 6
10 10 C 1.32854 * 121.69321 * 0.02562 * 9 8 7
11 11 C 1.47834 * 119.78224 * 180.02562 * 10 9 8
12 12 O 1.21555 * 120.00323 * 180.02562 * 11 10 9
13 13 N 1.34777 * 119.99914 * 359.97438 * 11 10 9
14 14 C 1.46501 * 119.99966 * 179.97438 * 13 11 10
15 15 H 1.09000 * 109.45028 * 324.97314 * 14 13 11
16 16 C 1.53039 * 109.45776 * 84.93727 * 14 13 11
17 17 C 1.53627 * 109.24495 * 58.53144 * 16 14 13
18 18 N 1.46926 * 108.54254 * 54.85077 * 17 16 14
19 19 C 1.36944 * 120.62496 * 126.36629 * 18 17 16
20 20 H 1.07995 * 120.00273 * 332.96996 * 19 18 17
21 21 C 1.38809 * 119.99420 * 152.96331 * 19 18 17
22 22 N 1.31622 * 119.99743 * 158.75450 * 21 19 18
23 23 Si 1.86801 * 120.00447 * 339.02924 * 21 19 18
24 24 H 1.48503 * 109.47071 * 95.06662 * 23 21 19
25 25 H 1.48500 * 109.47597 * 215.06974 * 23 21 19
26 26 H 1.48504 * 109.46976 * 335.06941 * 23 21 19
27 27 C 1.46920 * 118.74047 * 306.10189 * 18 17 16
28 28 C 1.53042 * 109.45939 * 205.00239 * 14 13 11
29 29 H 1.08996 * 109.49659 * 181.39233 * 28 14 13
30 30 C 1.53002 * 109.49871 * 61.29721 * 28 14 13
31 31 H 1.09004 * 109.47197 * 180.02562 * 1 2 3
32 32 H 1.08992 * 109.46793 * 300.00460 * 1 2 3
33 33 H 1.09001 * 109.46959 * 59.99923 * 1 2 3
34 34 H 1.09001 * 109.46567 * 239.99632 * 2 1 3
35 35 H 1.09001 * 109.46959 * 120.00077 * 2 1 3
36 36 H 1.08997 * 109.47401 * 59.99617 * 3 2 1
37 37 H 1.09007 * 109.46917 * 299.99641 * 3 2 1
38 38 H 1.07996 * 120.77939 * 0.02562 * 6 5 4
39 39 H 1.08001 * 120.27765 * 179.75013 * 7 6 5
40 40 H 1.08008 * 119.46280 * 179.97438 * 8 7 6
41 41 H 0.96997 * 119.99741 * 0.02562 * 13 11 10
42 42 H 1.09000 * 109.49737 * 178.60337 * 16 14 13
43 43 H 1.08996 * 109.49745 * 298.66870 * 16 14 13
44 44 H 1.09003 * 109.73887 * 295.12023 * 17 16 14
45 45 H 1.09000 * 109.66511 * 174.54941 * 17 16 14
46 46 H 0.96999 * 119.99856 * 179.97438 * 22 21 19
47 47 H 1.09004 * 109.58406 * 173.64637 * 27 18 17
48 48 H 1.09003 * 109.58530 * 293.92411 * 27 18 17
49 49 H 1.08994 * 109.47349 * 300.16528 * 30 28 14
50 50 H 1.09005 * 109.46883 * 60.15892 * 30 28 14
51 51 H 1.08992 * 109.47139 * 180.15572 * 30 28 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 8 3.4691 1.4425 -0.0006
5 6 4.0849 2.6511 -0.0001
6 6 3.3371 3.8269 0.0064
7 6 4.0098 5.0352 0.0006
8 6 5.3974 5.0435 -0.0059
9 7 6.0821 3.9223 -0.0061
10 6 5.4811 2.7374 -0.0006
11 6 6.2932 1.5021 -0.0004
12 8 5.7475 0.4160 0.0042
13 7 7.6387 1.5802 -0.0063
14 6 8.4435 0.3561 -0.0056
15 1 7.9421 -0.4076 0.5890
16 6 8.6111 -0.1447 -1.4420
17 6 9.2839 0.9497 -2.2845
18 7 10.5412 1.3364 -1.6301
19 6 11.7225 1.3184 -2.3227
20 1 11.8481 0.6464 -3.1587
21 6 12.7583 2.1640 -1.9501
22 7 13.9951 1.8848 -2.3032
23 14 12.3979 3.6943 -0.9411
24 1 12.5986 3.3958 0.4997
25 1 13.3160 4.7864 -1.3529
26 1 10.9926 4.1171 -1.1680
27 6 10.5062 1.7485 -0.2203
28 6 9.8189 0.6505 0.5975
29 1 10.4269 -0.2539 0.5757
30 6 9.6523 1.1199 2.0442
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3632 0.5139 0.8899
33 1 -0.3633 0.5139 -0.8900
34 1 1.8933 -0.5139 -0.8900
35 1 1.8934 -0.5139 0.8900
36 1 1.6767 1.9563 0.8899
37 1 1.6768 1.9563 -0.8901
38 1 2.2576 3.7952 0.0117
39 1 3.4597 5.9647 0.0013
40 1 5.9230 5.9870 -0.0109
41 1 8.0742 2.4470 -0.0104
42 1 9.2305 -1.0416 -1.4447
43 1 7.6328 -0.3769 -1.8628
44 1 8.6268 1.8165 -2.3546
45 1 9.4944 0.5665 -3.2830
46 1 14.7189 2.4759 -2.0432
47 1 11.5235 1.8926 0.1436
48 1 9.9489 2.6805 -0.1258
49 1 9.0431 2.0234 2.0652
50 1 9.1632 0.3383 2.6257
51 1 10.6319 1.3321 2.4724
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000942594339.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:05:31
Heat of formation + Delta-G solvation = -17.499975 kcal
Electronic energy + Delta-G solvation = -31821.226486 eV
Core-core repulsion = 27721.620850 eV
Total energy + Delta-G solvation = -4099.605636 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.11517 -39.58655 -38.56572 -37.58709 -34.42187 -34.17288 -32.86508 -32.10560
-31.74477 -30.80841 -29.94286 -27.06347 -26.19879 -25.45055 -24.59522 -23.30473
-22.49229 -21.87938 -20.90138 -20.75594 -18.75788 -18.59347 -17.87787 -17.16061
-16.70549 -16.69278 -15.65424 -15.41831 -15.10954 -14.99982 -14.70705 -14.44561
-14.22003 -14.07854 -13.78336 -13.57870 -13.46940 -13.25091 -13.00697 -12.99720
-12.66499 -12.49467 -12.31006 -12.12871 -11.95176 -11.84976 -11.44289 -11.36363
-11.27470 -11.08266 -11.03726 -10.61129 -10.43474 -10.19610 -10.15431 -10.10239
-9.94225 -9.63019 -9.55068 -9.39518 -8.76052 -8.56162 -8.50951 -6.91662
-5.90739 -3.25184 0.48643 0.96950 2.75794 2.85047 3.33784 3.35473
3.51832 3.55064 3.78454 4.12869 4.27888 4.42107 4.48128 4.53394
4.57005 4.71582 4.79943 4.84625 4.98753 4.99416 5.05942 5.11725
5.23564 5.29872 5.38066 5.43351 5.53926 5.58436 5.62275 5.65881
5.69599 5.77426 5.83439 5.97356 6.01171 6.08766 6.10659 6.15304
6.26655 6.40033 6.48637 6.49926 6.68987 6.73468 6.78383 6.87922
6.96907 7.04372 7.52660 7.92259 8.00593 8.37391 8.50868 8.98854
9.76762 10.14974 11.25284
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015527 B = 0.003017 C = 0.002758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1802.828538 B = 9278.163984 C =10151.636123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.123 4.123
3 C 0.050 3.950
4 O -0.269 6.269
5 C 0.138 3.862
6 C -0.179 4.179
7 C -0.110 4.110
8 C 0.058 3.942
9 N -0.418 5.418
10 C 0.048 3.952
11 C 0.569 3.431
12 O -0.523 6.523
13 N -0.697 5.697
14 C 0.159 3.841
15 H 0.079 0.921
16 C -0.146 4.146
17 C 0.151 3.849
18 N -0.605 5.605
19 C -0.256 4.256
20 H 0.086 0.914
21 C 0.022 3.978
22 N -0.909 5.909
23 Si 0.879 3.121
24 H -0.289 1.289
25 H -0.305 1.305
26 H -0.268 1.268
27 C 0.132 3.868
28 C -0.118 4.118
29 H 0.089 0.911
30 C -0.145 4.145
31 H 0.065 0.935
32 H 0.056 0.944
33 H 0.056 0.944
34 H 0.077 0.923
35 H 0.076 0.924
36 H 0.061 0.939
37 H 0.062 0.938
38 H 0.144 0.856
39 H 0.142 0.858
40 H 0.165 0.835
41 H 0.409 0.591
42 H 0.072 0.928
43 H 0.060 0.940
44 H 0.022 0.978
45 H 0.061 0.939
46 H 0.262 0.738
47 H 0.074 0.926
48 H 0.024 0.976
49 H 0.051 0.949
50 H 0.051 0.949
51 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.708 3.452 7.728 28.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.160 4.160
3 C -0.025 4.025
4 O -0.179 6.179
5 C 0.087 3.913
6 C -0.205 4.205
7 C -0.130 4.130
8 C -0.103 4.103
9 N -0.129 5.129
10 C -0.091 4.091
11 C 0.353 3.647
12 O -0.398 6.398
13 N -0.349 5.349
14 C 0.055 3.945
15 H 0.097 0.903
16 C -0.186 4.186
17 C 0.025 3.975
18 N -0.328 5.328
19 C -0.384 4.384
20 H 0.103 0.897
21 C -0.177 4.177
22 N -0.552 5.552
23 Si 0.709 3.291
24 H -0.217 1.217
25 H -0.233 1.233
26 H -0.193 1.193
27 C 0.006 3.994
28 C -0.139 4.139
29 H 0.107 0.893
30 C -0.203 4.203
31 H 0.084 0.916
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.096 0.904
35 H 0.095 0.905
36 H 0.080 0.920
37 H 0.080 0.920
38 H 0.162 0.838
39 H 0.160 0.840
40 H 0.182 0.818
41 H 0.246 0.754
42 H 0.091 0.909
43 H 0.079 0.921
44 H 0.040 0.960
45 H 0.080 0.920
46 H 0.071 0.929
47 H 0.092 0.908
48 H 0.041 0.959
49 H 0.070 0.930
50 H 0.070 0.930
51 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -25.906 2.455 7.687 27.134
hybrid contribution -0.985 1.747 0.536 2.076
sum -26.892 4.203 8.223 28.433
Atomic orbital electron populations
1.21697 0.94310 1.02622 1.01976 1.21454 0.95653 0.94492 1.04408
1.23028 0.78786 0.99556 1.01157 1.86418 1.20644 1.24591 1.86265
1.20010 0.92270 0.85656 0.93359 1.21730 1.00945 0.91890 1.05943
1.22195 0.95770 0.98369 0.96635 1.22733 0.91336 0.96478 0.99713
1.67674 1.39925 0.97463 1.07865 1.20848 0.88577 0.93101 1.06590
1.17561 0.82461 0.87074 0.77586 1.90802 1.71785 1.27394 1.49867
1.46003 1.05147 1.11025 1.72761 1.20934 0.90535 0.85949 0.97050
0.90256 1.22449 1.00421 1.00191 0.95552 1.20969 0.87062 0.94334
0.95153 1.44370 1.04059 1.78704 1.05677 1.18933 0.88542 1.16964
1.13992 0.89674 1.25276 0.95290 0.98374 0.98755 1.69852 0.98463
1.37724 1.49157 0.86994 0.77972 0.84938 0.79175 1.21674 1.23294
1.19293 1.21352 0.99352 0.93714 0.84939 1.21949 0.95427 1.01984
0.94503 0.89317 1.21789 1.01469 1.00967 0.96057 0.91615 0.92503
0.92450 0.90431 0.90509 0.92037 0.91987 0.83840 0.84027 0.81779
0.75353 0.90917 0.92139 0.95963 0.92014 0.92868 0.90770 0.95865
0.92977 0.92995 0.92546
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16
2 C -0.12 -0.96 6.30 -26.73 -0.17 -1.13 16
3 C 0.05 0.42 4.76 37.16 0.18 0.60 16
4 O -0.27 -3.54 8.20 -40.59 -0.33 -3.88 16
5 C 0.14 1.78 6.71 -38.55 -0.26 1.52 16
6 C -0.18 -1.63 9.13 -39.15 -0.36 -1.99 16
7 C -0.11 -0.88 10.10 -39.36 -0.40 -1.28 16
8 C 0.06 0.60 11.17 -17.55 -0.20 0.40 16
9 N -0.42 -5.84 9.54 -9.71 -0.09 -5.94 16
10 C 0.05 0.73 6.76 -82.88 -0.56 0.17 16
11 C 0.57 9.81 7.76 -12.33 -0.10 9.71 16
12 O -0.52 -10.03 14.80 -16.63 -0.25 -10.27 16
13 N -0.70 -11.87 3.58 -54.71 -0.20 -12.07 16
14 C 0.16 2.76 2.21 -67.89 -0.15 2.61 16
15 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16
16 C -0.15 -2.65 5.79 -26.39 -0.15 -2.80 16
17 C 0.15 3.12 6.28 -3.48 -0.02 3.10 16
18 N -0.60 -14.45 2.77 -172.06 -0.48 -14.93 16
19 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16
20 H 0.09 2.56 8.05 -52.49 -0.42 2.14 16
21 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16
22 N -0.91 -28.04 13.97 55.49 0.78 -27.26 16
23 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16
24 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16
25 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16
26 H -0.27 -6.69 6.49 56.52 0.37 -6.32 16
27 C 0.13 2.87 3.18 -3.72 -0.01 2.86 16
28 C -0.12 -2.11 2.67 -90.50 -0.24 -2.35 16
29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16
30 C -0.14 -2.23 9.06 37.16 0.34 -1.89 16
31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16
37 H 0.06 0.43 7.71 -51.92 -0.40 0.03 16
38 H 0.14 0.87 6.46 -52.49 -0.34 0.54 16
39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16
40 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16
41 H 0.41 7.13 6.06 -40.82 -0.25 6.88 16
42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16
43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
44 H 0.02 0.47 7.74 -51.93 -0.40 0.06 16
45 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16
46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
47 H 0.07 1.77 4.49 -51.93 -0.23 1.54 16
48 H 0.02 0.51 5.51 -51.93 -0.29 0.22 16
49 H 0.05 0.78 7.53 -51.93 -0.39 0.39 16
50 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
51 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
LS Contribution 397.16 15.07 5.99 5.99
Total: -1.00 -33.92 397.16 -8.89 -42.81
By element:
Atomic # 1 Polarization: 13.16 SS G_CDS: -8.19 Total: 4.97 kcal
Atomic # 6 Polarization: 4.26 SS G_CDS: -1.97 Total: 2.29 kcal
Atomic # 7 Polarization: -60.20 SS G_CDS: 0.01 Total: -60.19 kcal
Atomic # 8 Polarization: -13.57 SS G_CDS: -0.58 Total: -14.15 kcal
Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -33.92 -8.89 -42.81 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000942594339.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.311 kcal
(2) G-P(sol) polarization free energy of solvation -33.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.611 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds