Wall clock time and date at job start Wed Apr 1 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 O 1.42902 * 109.47207 * 180.02562 * 3 2 1 5 5 C 1.35648 * 116.99949 * 180.02562 * 4 3 2 6 6 C 1.39346 * 120.54304 * 0.26552 * 5 4 3 7 7 C 1.38299 * 118.43663 * 180.28597 * 6 5 4 8 8 C 1.38768 * 119.44584 * 359.73091 * 7 6 5 9 9 N 1.31376 * 121.06911 * 359.97438 * 8 7 6 10 10 C 1.32854 * 121.69321 * 0.02562 * 9 8 7 11 11 C 1.47834 * 119.78224 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00323 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99914 * 359.97438 * 11 10 9 14 14 C 1.46501 * 119.99966 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.45028 * 324.97314 * 14 13 11 16 16 C 1.53039 * 109.45776 * 84.93727 * 14 13 11 17 17 C 1.53627 * 109.24495 * 58.53144 * 16 14 13 18 18 N 1.46926 * 108.54254 * 54.85077 * 17 16 14 19 19 C 1.36944 * 120.62496 * 126.36629 * 18 17 16 20 20 H 1.07995 * 120.00273 * 332.96996 * 19 18 17 21 21 C 1.38809 * 119.99420 * 152.96331 * 19 18 17 22 22 N 1.31622 * 119.99743 * 158.75450 * 21 19 18 23 23 Si 1.86801 * 120.00447 * 339.02924 * 21 19 18 24 24 H 1.48503 * 109.47071 * 95.06662 * 23 21 19 25 25 H 1.48500 * 109.47597 * 215.06974 * 23 21 19 26 26 H 1.48504 * 109.46976 * 335.06941 * 23 21 19 27 27 C 1.46920 * 118.74047 * 306.10189 * 18 17 16 28 28 C 1.53042 * 109.45939 * 205.00239 * 14 13 11 29 29 H 1.08996 * 109.49659 * 181.39233 * 28 14 13 30 30 C 1.53002 * 109.49871 * 61.29721 * 28 14 13 31 31 H 1.09004 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46793 * 300.00460 * 1 2 3 33 33 H 1.09001 * 109.46959 * 59.99923 * 1 2 3 34 34 H 1.09001 * 109.46567 * 239.99632 * 2 1 3 35 35 H 1.09001 * 109.46959 * 120.00077 * 2 1 3 36 36 H 1.08997 * 109.47401 * 59.99617 * 3 2 1 37 37 H 1.09007 * 109.46917 * 299.99641 * 3 2 1 38 38 H 1.07996 * 120.77939 * 0.02562 * 6 5 4 39 39 H 1.08001 * 120.27765 * 179.75013 * 7 6 5 40 40 H 1.08008 * 119.46280 * 179.97438 * 8 7 6 41 41 H 0.96997 * 119.99741 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.49737 * 178.60337 * 16 14 13 43 43 H 1.08996 * 109.49745 * 298.66870 * 16 14 13 44 44 H 1.09003 * 109.73887 * 295.12023 * 17 16 14 45 45 H 1.09000 * 109.66511 * 174.54941 * 17 16 14 46 46 H 0.96999 * 119.99856 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.58406 * 173.64637 * 27 18 17 48 48 H 1.09003 * 109.58530 * 293.92411 * 27 18 17 49 49 H 1.08994 * 109.47349 * 300.16528 * 30 28 14 50 50 H 1.09005 * 109.46883 * 60.15892 * 30 28 14 51 51 H 1.08992 * 109.47139 * 180.15572 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0849 2.6511 -0.0001 6 6 3.3371 3.8269 0.0064 7 6 4.0098 5.0352 0.0006 8 6 5.3974 5.0435 -0.0059 9 7 6.0821 3.9223 -0.0061 10 6 5.4811 2.7374 -0.0006 11 6 6.2932 1.5021 -0.0004 12 8 5.7475 0.4160 0.0042 13 7 7.6387 1.5802 -0.0063 14 6 8.4435 0.3561 -0.0056 15 1 7.9421 -0.4076 0.5890 16 6 8.6111 -0.1447 -1.4420 17 6 9.2839 0.9497 -2.2845 18 7 10.5412 1.3364 -1.6301 19 6 11.7225 1.3184 -2.3227 20 1 11.8481 0.6464 -3.1587 21 6 12.7583 2.1640 -1.9501 22 7 13.9951 1.8848 -2.3032 23 14 12.3979 3.6943 -0.9411 24 1 12.5986 3.3958 0.4997 25 1 13.3160 4.7864 -1.3529 26 1 10.9926 4.1171 -1.1680 27 6 10.5062 1.7485 -0.2203 28 6 9.8189 0.6505 0.5975 29 1 10.4269 -0.2539 0.5757 30 6 9.6523 1.1199 2.0442 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6768 1.9563 -0.8901 38 1 2.2576 3.7952 0.0117 39 1 3.4597 5.9647 0.0013 40 1 5.9230 5.9870 -0.0109 41 1 8.0742 2.4470 -0.0104 42 1 9.2305 -1.0416 -1.4447 43 1 7.6328 -0.3769 -1.8628 44 1 8.6268 1.8165 -2.3546 45 1 9.4944 0.5665 -3.2830 46 1 14.7189 2.4759 -2.0432 47 1 11.5235 1.8926 0.1436 48 1 9.9489 2.6805 -0.1258 49 1 9.0431 2.0234 2.0652 50 1 9.1632 0.3383 2.6257 51 1 10.6319 1.3321 2.4724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942594339.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:31 Heat of formation + Delta-G solvation = -17.499975 kcal Electronic energy + Delta-G solvation = -31821.226486 eV Core-core repulsion = 27721.620850 eV Total energy + Delta-G solvation = -4099.605636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.11517 -39.58655 -38.56572 -37.58709 -34.42187 -34.17288 -32.86508 -32.10560 -31.74477 -30.80841 -29.94286 -27.06347 -26.19879 -25.45055 -24.59522 -23.30473 -22.49229 -21.87938 -20.90138 -20.75594 -18.75788 -18.59347 -17.87787 -17.16061 -16.70549 -16.69278 -15.65424 -15.41831 -15.10954 -14.99982 -14.70705 -14.44561 -14.22003 -14.07854 -13.78336 -13.57870 -13.46940 -13.25091 -13.00697 -12.99720 -12.66499 -12.49467 -12.31006 -12.12871 -11.95176 -11.84976 -11.44289 -11.36363 -11.27470 -11.08266 -11.03726 -10.61129 -10.43474 -10.19610 -10.15431 -10.10239 -9.94225 -9.63019 -9.55068 -9.39518 -8.76052 -8.56162 -8.50951 -6.91662 -5.90739 -3.25184 0.48643 0.96950 2.75794 2.85047 3.33784 3.35473 3.51832 3.55064 3.78454 4.12869 4.27888 4.42107 4.48128 4.53394 4.57005 4.71582 4.79943 4.84625 4.98753 4.99416 5.05942 5.11725 5.23564 5.29872 5.38066 5.43351 5.53926 5.58436 5.62275 5.65881 5.69599 5.77426 5.83439 5.97356 6.01171 6.08766 6.10659 6.15304 6.26655 6.40033 6.48637 6.49926 6.68987 6.73468 6.78383 6.87922 6.96907 7.04372 7.52660 7.92259 8.00593 8.37391 8.50868 8.98854 9.76762 10.14974 11.25284 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.003017 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.828538 B = 9278.163984 C =10151.636123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.269 6.269 5 C 0.138 3.862 6 C -0.179 4.179 7 C -0.110 4.110 8 C 0.058 3.942 9 N -0.418 5.418 10 C 0.048 3.952 11 C 0.569 3.431 12 O -0.523 6.523 13 N -0.697 5.697 14 C 0.159 3.841 15 H 0.079 0.921 16 C -0.146 4.146 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.256 4.256 20 H 0.086 0.914 21 C 0.022 3.978 22 N -0.909 5.909 23 Si 0.879 3.121 24 H -0.289 1.289 25 H -0.305 1.305 26 H -0.268 1.268 27 C 0.132 3.868 28 C -0.118 4.118 29 H 0.089 0.911 30 C -0.145 4.145 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.409 0.591 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.022 0.978 45 H 0.061 0.939 46 H 0.262 0.738 47 H 0.074 0.926 48 H 0.024 0.976 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.708 3.452 7.728 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.179 6.179 5 C 0.087 3.913 6 C -0.205 4.205 7 C -0.130 4.130 8 C -0.103 4.103 9 N -0.129 5.129 10 C -0.091 4.091 11 C 0.353 3.647 12 O -0.398 6.398 13 N -0.349 5.349 14 C 0.055 3.945 15 H 0.097 0.903 16 C -0.186 4.186 17 C 0.025 3.975 18 N -0.328 5.328 19 C -0.384 4.384 20 H 0.103 0.897 21 C -0.177 4.177 22 N -0.552 5.552 23 Si 0.709 3.291 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.193 1.193 27 C 0.006 3.994 28 C -0.139 4.139 29 H 0.107 0.893 30 C -0.203 4.203 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.182 0.818 41 H 0.246 0.754 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.041 0.959 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.906 2.455 7.687 27.134 hybrid contribution -0.985 1.747 0.536 2.076 sum -26.892 4.203 8.223 28.433 Atomic orbital electron populations 1.21697 0.94310 1.02622 1.01976 1.21454 0.95653 0.94492 1.04408 1.23028 0.78786 0.99556 1.01157 1.86418 1.20644 1.24591 1.86265 1.20010 0.92270 0.85656 0.93359 1.21730 1.00945 0.91890 1.05943 1.22195 0.95770 0.98369 0.96635 1.22733 0.91336 0.96478 0.99713 1.67674 1.39925 0.97463 1.07865 1.20848 0.88577 0.93101 1.06590 1.17561 0.82461 0.87074 0.77586 1.90802 1.71785 1.27394 1.49867 1.46003 1.05147 1.11025 1.72761 1.20934 0.90535 0.85949 0.97050 0.90256 1.22449 1.00421 1.00191 0.95552 1.20969 0.87062 0.94334 0.95153 1.44370 1.04059 1.78704 1.05677 1.18933 0.88542 1.16964 1.13992 0.89674 1.25276 0.95290 0.98374 0.98755 1.69852 0.98463 1.37724 1.49157 0.86994 0.77972 0.84938 0.79175 1.21674 1.23294 1.19293 1.21352 0.99352 0.93714 0.84939 1.21949 0.95427 1.01984 0.94503 0.89317 1.21789 1.01469 1.00967 0.96057 0.91615 0.92503 0.92450 0.90431 0.90509 0.92037 0.91987 0.83840 0.84027 0.81779 0.75353 0.90917 0.92139 0.95963 0.92014 0.92868 0.90770 0.95865 0.92977 0.92995 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.96 6.30 -26.73 -0.17 -1.13 16 3 C 0.05 0.42 4.76 37.16 0.18 0.60 16 4 O -0.27 -3.54 8.20 -40.59 -0.33 -3.88 16 5 C 0.14 1.78 6.71 -38.55 -0.26 1.52 16 6 C -0.18 -1.63 9.13 -39.15 -0.36 -1.99 16 7 C -0.11 -0.88 10.10 -39.36 -0.40 -1.28 16 8 C 0.06 0.60 11.17 -17.55 -0.20 0.40 16 9 N -0.42 -5.84 9.54 -9.71 -0.09 -5.94 16 10 C 0.05 0.73 6.76 -82.88 -0.56 0.17 16 11 C 0.57 9.81 7.76 -12.33 -0.10 9.71 16 12 O -0.52 -10.03 14.80 -16.63 -0.25 -10.27 16 13 N -0.70 -11.87 3.58 -54.71 -0.20 -12.07 16 14 C 0.16 2.76 2.21 -67.89 -0.15 2.61 16 15 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 16 C -0.15 -2.65 5.79 -26.39 -0.15 -2.80 16 17 C 0.15 3.12 6.28 -3.48 -0.02 3.10 16 18 N -0.60 -14.45 2.77 -172.06 -0.48 -14.93 16 19 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 20 H 0.09 2.56 8.05 -52.49 -0.42 2.14 16 21 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 22 N -0.91 -28.04 13.97 55.49 0.78 -27.26 16 23 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16 24 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16 25 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.27 -6.69 6.49 56.52 0.37 -6.32 16 27 C 0.13 2.87 3.18 -3.72 -0.01 2.86 16 28 C -0.12 -2.11 2.67 -90.50 -0.24 -2.35 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 30 C -0.14 -2.23 9.06 37.16 0.34 -1.89 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 37 H 0.06 0.43 7.71 -51.92 -0.40 0.03 16 38 H 0.14 0.87 6.46 -52.49 -0.34 0.54 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.41 7.13 6.06 -40.82 -0.25 6.88 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.47 7.74 -51.93 -0.40 0.06 16 45 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.07 1.77 4.49 -51.93 -0.23 1.54 16 48 H 0.02 0.51 5.51 -51.93 -0.29 0.22 16 49 H 0.05 0.78 7.53 -51.93 -0.39 0.39 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -33.92 397.16 -8.89 -42.81 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.19 Total: 4.97 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.97 Total: 2.29 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.01 Total: -60.19 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.58 Total: -14.15 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.92 -8.89 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942594339.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.311 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds