Wall clock time and date at job start Wed Apr 1 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 O 1.42902 * 109.47207 * 180.02562 * 3 2 1 5 5 C 1.35648 * 116.99949 * 180.02562 * 4 3 2 6 6 C 1.39346 * 120.54304 * 0.26552 * 5 4 3 7 7 C 1.38299 * 118.43663 * 180.28597 * 6 5 4 8 8 C 1.38768 * 119.44584 * 359.73091 * 7 6 5 9 9 N 1.31376 * 121.06911 * 359.97438 * 8 7 6 10 10 C 1.32854 * 121.69321 * 0.02562 * 9 8 7 11 11 C 1.47834 * 119.78224 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00323 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99914 * 359.97438 * 11 10 9 14 14 C 1.46501 * 119.99966 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.45028 * 324.97314 * 14 13 11 16 16 C 1.53039 * 109.45776 * 84.93727 * 14 13 11 17 17 C 1.53627 * 109.24495 * 58.53144 * 16 14 13 18 18 N 1.46926 * 108.54254 * 54.85077 * 17 16 14 19 19 C 1.36944 * 120.62496 * 126.36629 * 18 17 16 20 20 H 1.07995 * 120.00273 * 332.96996 * 19 18 17 21 21 C 1.38809 * 119.99420 * 152.96331 * 19 18 17 22 22 N 1.31622 * 119.99743 * 158.75450 * 21 19 18 23 23 Si 1.86801 * 120.00447 * 339.02924 * 21 19 18 24 24 H 1.48503 * 109.47071 * 95.06662 * 23 21 19 25 25 H 1.48500 * 109.47597 * 215.06974 * 23 21 19 26 26 H 1.48504 * 109.46976 * 335.06941 * 23 21 19 27 27 C 1.46920 * 118.74047 * 306.10189 * 18 17 16 28 28 C 1.53042 * 109.45939 * 205.00239 * 14 13 11 29 29 H 1.08996 * 109.49659 * 181.39233 * 28 14 13 30 30 C 1.53002 * 109.49871 * 61.29721 * 28 14 13 31 31 H 1.09004 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46793 * 300.00460 * 1 2 3 33 33 H 1.09001 * 109.46959 * 59.99923 * 1 2 3 34 34 H 1.09001 * 109.46567 * 239.99632 * 2 1 3 35 35 H 1.09001 * 109.46959 * 120.00077 * 2 1 3 36 36 H 1.08997 * 109.47401 * 59.99617 * 3 2 1 37 37 H 1.09007 * 109.46917 * 299.99641 * 3 2 1 38 38 H 1.07996 * 120.77939 * 0.02562 * 6 5 4 39 39 H 1.08001 * 120.27765 * 179.75013 * 7 6 5 40 40 H 1.08008 * 119.46280 * 179.97438 * 8 7 6 41 41 H 0.96997 * 119.99741 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.49737 * 178.60337 * 16 14 13 43 43 H 1.08996 * 109.49745 * 298.66870 * 16 14 13 44 44 H 1.09003 * 109.73887 * 295.12023 * 17 16 14 45 45 H 1.09000 * 109.66511 * 174.54941 * 17 16 14 46 46 H 0.96999 * 119.99856 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.58406 * 173.64637 * 27 18 17 48 48 H 1.09003 * 109.58530 * 293.92411 * 27 18 17 49 49 H 1.08994 * 109.47349 * 300.16528 * 30 28 14 50 50 H 1.09005 * 109.46883 * 60.15892 * 30 28 14 51 51 H 1.08992 * 109.47139 * 180.15572 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0849 2.6511 -0.0001 6 6 3.3371 3.8269 0.0064 7 6 4.0098 5.0352 0.0006 8 6 5.3974 5.0435 -0.0059 9 7 6.0821 3.9223 -0.0061 10 6 5.4811 2.7374 -0.0006 11 6 6.2932 1.5021 -0.0004 12 8 5.7475 0.4160 0.0042 13 7 7.6387 1.5802 -0.0063 14 6 8.4435 0.3561 -0.0056 15 1 7.9421 -0.4076 0.5890 16 6 8.6111 -0.1447 -1.4420 17 6 9.2839 0.9497 -2.2845 18 7 10.5412 1.3364 -1.6301 19 6 11.7225 1.3184 -2.3227 20 1 11.8481 0.6464 -3.1587 21 6 12.7583 2.1640 -1.9501 22 7 13.9951 1.8848 -2.3032 23 14 12.3979 3.6943 -0.9411 24 1 12.5986 3.3958 0.4997 25 1 13.3160 4.7864 -1.3529 26 1 10.9926 4.1171 -1.1680 27 6 10.5062 1.7485 -0.2203 28 6 9.8189 0.6505 0.5975 29 1 10.4269 -0.2539 0.5757 30 6 9.6523 1.1199 2.0442 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6768 1.9563 -0.8901 38 1 2.2576 3.7952 0.0117 39 1 3.4597 5.9647 0.0013 40 1 5.9230 5.9870 -0.0109 41 1 8.0742 2.4470 -0.0104 42 1 9.2305 -1.0416 -1.4447 43 1 7.6328 -0.3769 -1.8628 44 1 8.6268 1.8165 -2.3546 45 1 9.4944 0.5665 -3.2830 46 1 14.7189 2.4759 -2.0432 47 1 11.5235 1.8926 0.1436 48 1 9.9489 2.6805 -0.1258 49 1 9.0431 2.0234 2.0652 50 1 9.1632 0.3383 2.6257 51 1 10.6319 1.3321 2.4724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942594339.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:30 Heat of formation + Delta-G solvation = -38.993466 kcal Electronic energy + Delta-G solvation = -31822.158514 eV Core-core repulsion = 27721.620850 eV Total energy + Delta-G solvation = -4100.537664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.03157 -40.90213 -39.40523 -39.03271 -36.01042 -34.91670 -34.04716 -33.65310 -33.25716 -31.96679 -31.29094 -27.71536 -27.60892 -27.20230 -25.73419 -24.29454 -23.90247 -22.70474 -22.49261 -21.86361 -20.30921 -19.53496 -18.89037 -18.73978 -17.93048 -17.41969 -17.28319 -16.56215 -16.45289 -16.17587 -15.93504 -15.50074 -15.39617 -15.30623 -14.97433 -14.95632 -14.68575 -14.65215 -14.36444 -14.11738 -13.87583 -13.60820 -13.54311 -13.09774 -13.03115 -13.01458 -12.97527 -12.62770 -12.53528 -12.33226 -12.11409 -11.96455 -11.94394 -11.63419 -11.62288 -11.52958 -11.30623 -11.23112 -10.84535 -10.65768 -10.58673 -10.02588 -9.48982 -8.93536 -8.15542 -5.47079 -0.35712 0.21459 1.30812 1.42503 1.51968 1.78646 2.02618 2.16920 2.42619 2.83347 3.04320 3.21723 3.32229 3.57185 3.66411 3.71893 3.91256 3.94195 3.94644 4.01492 4.02960 4.14962 4.24615 4.25492 4.39201 4.47356 4.51021 4.52228 4.52981 4.60132 4.64225 4.75941 4.81514 4.86420 4.89849 4.99054 4.99310 5.01034 5.09711 5.13129 5.16165 5.18643 5.26821 5.30852 5.36430 5.44846 5.59317 5.86548 6.13020 6.23231 6.48801 6.82329 6.90461 7.24122 7.61599 8.02613 9.04164 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.003017 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.828538 B = 9278.163984 C =10151.636123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.043 3.957 4 O -0.302 6.302 5 C 0.127 3.873 6 C -0.172 4.172 7 C -0.086 4.086 8 C 0.050 3.950 9 N -0.447 5.447 10 C 0.004 3.996 11 C 0.567 3.433 12 O -0.553 6.553 13 N -0.697 5.697 14 C 0.166 3.834 15 H 0.085 0.915 16 C -0.135 4.135 17 C 0.153 3.847 18 N -0.615 5.615 19 C -0.248 4.248 20 H 0.051 0.949 21 C -0.034 4.034 22 N -0.956 5.956 23 Si 0.943 3.057 24 H -0.273 1.273 25 H -0.312 1.312 26 H -0.258 1.258 27 C 0.131 3.869 28 C -0.109 4.109 29 H 0.082 0.918 30 C -0.138 4.138 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.179 0.821 39 H 0.189 0.811 40 H 0.190 0.810 41 H 0.407 0.593 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.053 0.947 46 H 0.261 0.739 47 H 0.054 0.946 48 H 0.032 0.968 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.293 5.929 9.430 32.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.031 4.031 4 O -0.213 6.213 5 C 0.076 3.924 6 C -0.198 4.198 7 C -0.105 4.105 8 C -0.112 4.112 9 N -0.159 5.159 10 C -0.132 4.132 11 C 0.353 3.647 12 O -0.431 6.431 13 N -0.348 5.348 14 C 0.061 3.939 15 H 0.103 0.897 16 C -0.175 4.175 17 C 0.028 3.972 18 N -0.339 5.339 19 C -0.377 4.377 20 H 0.069 0.931 21 C -0.229 4.229 22 N -0.602 5.602 23 Si 0.772 3.228 24 H -0.199 1.199 25 H -0.241 1.241 26 H -0.183 1.183 27 C 0.006 3.994 28 C -0.129 4.129 29 H 0.101 0.899 30 C -0.196 4.196 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.196 0.804 39 H 0.206 0.794 40 H 0.207 0.793 41 H 0.245 0.755 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.539 4.912 9.411 31.388 hybrid contribution 0.004 0.989 -0.061 0.990 sum -29.535 5.900 9.350 31.536 Atomic orbital electron populations 1.21663 0.92066 1.03180 1.03024 1.21477 0.97495 0.94277 1.02859 1.23314 0.76780 1.00055 1.02971 1.86378 1.23014 1.25517 1.86359 1.20193 0.91906 0.86829 0.93435 1.22158 1.02506 0.90748 1.04365 1.22703 0.94979 0.99790 0.93036 1.23350 0.92861 0.96248 0.98790 1.67572 1.41236 0.98035 1.09036 1.20497 0.89392 0.92561 1.10774 1.18001 0.82345 0.87883 0.76447 1.90766 1.72222 1.28804 1.51293 1.45940 1.05325 1.10457 1.73105 1.20803 0.90371 0.86537 0.96153 0.89716 1.22317 1.00130 0.99116 0.95965 1.21008 0.85955 0.95131 0.95141 1.44444 1.03692 1.79008 1.06788 1.18849 0.90027 1.15725 1.13125 0.93086 1.25886 0.94933 1.01114 1.00961 1.69977 0.99457 1.38928 1.51800 0.85952 0.77830 0.80529 0.78518 1.19912 1.24068 1.18270 1.21386 0.98712 0.95356 0.83939 1.21813 0.95099 1.00319 0.95708 0.89929 1.21737 1.02068 1.01701 0.94109 0.91391 0.91312 0.91455 0.92168 0.91964 0.89912 0.90169 0.80396 0.79385 0.79271 0.75543 0.91033 0.91711 0.95654 0.92882 0.92961 0.92795 0.95064 0.92566 0.91161 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.84 6.30 30.60 0.19 -1.65 16 3 C 0.04 0.65 4.76 71.98 0.34 0.99 16 4 O -0.30 -7.74 8.20 -68.63 -0.56 -8.30 16 5 C 0.13 3.08 6.71 22.94 0.15 3.24 16 6 C -0.17 -2.46 9.13 22.55 0.21 -2.25 16 7 C -0.09 -0.97 10.10 22.41 0.23 -0.74 16 8 C 0.05 0.86 11.17 84.89 0.95 1.81 16 9 N -0.45 -11.84 9.54 -184.62 -1.76 -13.60 16 10 C 0.00 0.13 6.76 41.93 0.28 0.41 16 11 C 0.57 19.62 7.76 86.78 0.67 20.30 16 12 O -0.55 -21.59 14.80 17.10 0.25 -21.33 16 13 N -0.70 -23.47 3.58 -445.29 -1.59 -25.07 16 14 C 0.17 5.67 2.21 45.02 0.10 5.77 16 15 H 0.08 2.86 7.58 -2.39 -0.02 2.85 16 16 C -0.14 -4.95 5.79 30.82 0.18 -4.77 16 17 C 0.15 6.42 6.28 86.51 0.54 6.97 16 18 N -0.62 -29.74 2.77 -698.26 -1.94 -31.67 16 19 C -0.25 -14.36 10.04 84.03 0.84 -13.51 16 20 H 0.05 3.24 8.05 -2.91 -0.02 3.21 16 21 C -0.03 -2.03 5.23 84.86 0.44 -1.59 16 22 N -0.96 -60.76 13.97 21.65 0.30 -60.46 16 23 Si 0.94 46.88 24.35 68.60 1.67 48.55 16 24 H -0.27 -12.72 6.70 99.48 0.67 -12.06 16 25 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 26 H -0.26 -12.29 6.49 99.48 0.65 -11.64 16 27 C 0.13 5.60 3.18 86.36 0.27 5.88 16 28 C -0.11 -3.81 2.67 -10.72 -0.03 -3.84 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 C -0.14 -3.99 9.06 71.98 0.65 -3.34 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 0.86 7.68 -2.39 -0.02 0.84 16 37 H 0.08 0.88 7.71 -2.38 -0.02 0.86 16 38 H 0.18 1.22 6.46 -2.91 -0.02 1.20 16 39 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.41 13.94 6.06 -92.71 -0.56 13.38 16 42 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.03 1.06 7.74 -2.39 -0.02 1.04 16 45 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 46 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 47 H 0.05 2.54 4.49 -2.39 -0.01 2.53 16 48 H 0.03 1.31 5.51 -2.39 -0.01 1.29 16 49 H 0.06 1.58 7.53 -2.39 -0.02 1.56 16 50 H 0.07 1.78 8.14 -2.38 -0.02 1.77 16 51 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -77.53 397.16 3.39 -74.14 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.27 Total: 24.60 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.75 Total: 13.16 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -4.99 Total: -130.80 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.31 Total: -29.64 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.67 Total: 48.55 kcal Total: -77.53 3.39 -74.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942594339.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.145 kcal (2) G-P(sol) polarization free energy of solvation -77.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds