Wall clock time and date at job start Wed Apr 1 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47069 * 2 1 4 4 O 1.42905 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.35645 * 117.00120 * 180.02562 * 4 3 2 6 6 C 1.39345 * 120.54027 * 0.26750 * 5 4 3 7 7 C 1.38302 * 118.43824 * 180.26271 * 6 5 4 8 8 C 1.38767 * 119.44576 * 359.73165 * 7 6 5 9 9 N 1.31370 * 121.06514 * 0.02562 * 8 7 6 10 10 C 1.32857 * 121.69821 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78406 * 180.02562 * 10 9 8 12 12 O 1.21561 * 119.99976 * 180.02562 * 11 10 9 13 13 N 1.34771 * 120.00200 * 0.02562 * 11 10 9 14 14 C 1.46501 * 120.00334 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.44545 * 35.03197 * 14 13 11 16 16 C 1.53039 * 109.45921 * 275.06941 * 14 13 11 17 17 C 1.53196 * 109.31326 * 301.34165 * 16 14 13 18 18 N 1.46929 * 108.77668 * 305.36787 * 17 16 14 19 19 C 1.36935 * 120.62997 * 233.63171 * 18 17 16 20 20 H 1.07999 * 120.00259 * 27.65626 * 19 18 17 21 21 C 1.38812 * 119.99596 * 207.65815 * 19 18 17 22 22 N 1.31614 * 120.00311 * 17.36806 * 21 19 18 23 23 Si 1.86810 * 119.99778 * 197.37036 * 21 19 18 24 24 H 1.48501 * 109.46671 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47133 * 119.99909 * 23 21 19 26 26 H 1.48502 * 109.46949 * 240.00175 * 23 21 19 27 27 C 1.46927 * 118.73941 * 53.60249 * 18 17 16 28 28 C 1.53041 * 109.46172 * 154.99894 * 14 13 11 29 29 H 1.09000 * 109.49766 * 178.60428 * 28 14 13 30 30 C 1.52992 * 109.52528 * 298.68679 * 28 14 13 31 31 H 1.08995 * 109.47363 * 59.99855 * 1 2 3 32 32 H 1.08999 * 109.47243 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46969 * 299.99778 * 1 2 3 34 34 H 1.09003 * 109.46476 * 240.00226 * 2 1 3 35 35 H 1.09002 * 109.47005 * 120.00138 * 2 1 3 36 36 H 1.08999 * 109.47043 * 60.00268 * 3 2 1 37 37 H 1.09002 * 109.47320 * 299.99946 * 3 2 1 38 38 H 1.07998 * 120.78242 * 359.97438 * 6 5 4 39 39 H 1.08000 * 120.28194 * 179.70937 * 7 6 5 40 40 H 1.07994 * 119.46820 * 179.97438 * 8 7 6 41 41 H 0.97001 * 120.00090 * 359.97438 * 13 11 10 42 42 H 1.09000 * 109.50254 * 181.39306 * 16 14 13 43 43 H 1.09004 * 109.50178 * 61.29325 * 16 14 13 44 44 H 1.08995 * 109.59142 * 185.57837 * 17 16 14 45 45 H 1.08999 * 109.58383 * 65.15020 * 17 16 14 46 46 H 0.97008 * 119.99860 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.58556 * 186.60837 * 27 18 17 48 48 H 1.09006 * 109.58207 * 66.17874 * 27 18 17 49 49 H 1.08999 * 109.47524 * 179.97438 * 30 28 14 50 50 H 1.09002 * 109.47080 * 299.92187 * 30 28 14 51 51 H 1.09008 * 109.47039 * 59.92135 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0849 2.6510 -0.0001 6 6 3.3370 3.8268 0.0065 7 6 4.0097 5.0352 0.0011 8 6 5.3973 5.0435 -0.0050 9 7 6.0819 3.9223 -0.0062 10 6 5.4810 2.7375 -0.0012 11 6 6.2932 1.5022 -0.0022 12 8 5.7474 0.4160 0.0019 13 7 7.6386 1.5802 -0.0077 14 6 8.4434 0.3561 -0.0082 15 1 7.9372 -0.4108 -0.5945 16 6 8.6227 -0.1367 1.4296 17 6 9.3031 0.9569 2.2590 18 7 10.5543 1.3454 1.5938 19 6 11.7412 1.3303 2.2765 20 1 11.8786 0.6523 3.1059 21 6 12.7677 2.1867 1.9027 22 7 12.5104 3.2304 1.1433 23 14 14.5145 1.8576 2.4774 24 1 14.5374 0.6310 3.3142 25 1 15.3965 1.6691 1.2976 26 1 14.9979 3.0114 3.2776 27 6 10.5078 1.7497 0.1820 28 6 9.8139 0.6472 -0.6241 29 1 10.4221 -0.2571 -0.6021 30 6 9.6363 1.1081 -2.0721 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 2.2575 3.7952 0.0109 39 1 3.4596 5.9647 0.0013 40 1 5.9229 5.9869 -0.0096 41 1 8.0741 2.4470 -0.0113 42 1 9.2421 -1.0336 1.4322 43 1 7.6477 -0.3661 1.8598 44 1 9.5225 0.5759 3.2563 45 1 8.6446 1.8223 2.3328 46 1 13.2278 3.8290 0.8824 47 1 11.5221 1.8917 -0.1909 48 1 9.9475 2.6798 0.0866 49 1 10.6127 1.3156 -2.5098 50 1 9.1414 0.3238 -2.6449 51 1 9.0280 2.0125 -2.0935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942594340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:34 Heat of formation + Delta-G solvation = -23.640669 kcal Electronic energy + Delta-G solvation = -31663.624797 eV Core-core repulsion = 27563.752881 eV Total energy + Delta-G solvation = -4099.871916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99851 -39.38057 -38.45658 -37.32424 -34.32690 -34.03199 -32.74378 -31.86405 -31.62561 -30.63495 -29.35304 -26.98844 -25.88661 -25.39454 -24.49843 -23.19718 -22.14671 -21.72952 -20.91996 -20.52982 -18.51578 -18.37372 -17.73210 -17.04074 -16.62052 -16.60642 -15.41134 -15.18027 -14.96510 -14.78890 -14.58478 -14.31315 -14.12453 -13.79563 -13.69827 -13.45408 -13.26268 -13.09052 -12.89954 -12.81724 -12.50855 -12.44017 -12.21623 -11.90969 -11.88039 -11.36238 -11.29767 -11.12481 -10.97429 -10.93610 -10.84947 -10.66205 -10.29028 -10.05590 -10.03130 -9.99924 -9.86925 -9.68171 -9.41564 -9.31336 -8.63999 -8.45960 -8.31824 -6.60605 -5.74179 -3.15452 0.60032 1.07909 2.84863 2.97966 3.40008 3.48109 3.49623 3.50560 3.91208 4.25587 4.37355 4.52120 4.54141 4.54394 4.61225 4.81251 4.87745 4.93917 5.04068 5.13908 5.29055 5.34106 5.38223 5.44858 5.53325 5.63138 5.67246 5.73679 5.74906 5.75953 5.78937 5.89184 5.95316 6.18529 6.21714 6.27445 6.32391 6.44938 6.58016 6.65102 6.68991 6.77227 6.88574 7.04768 7.07013 7.15548 7.39224 7.66148 7.69188 7.84757 8.10754 8.49693 8.67106 9.26124 9.89804 10.46922 11.34025 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.002716 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.839897 B =10306.590974 C =11031.744757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.269 6.269 5 C 0.136 3.864 6 C -0.179 4.179 7 C -0.111 4.111 8 C 0.059 3.941 9 N -0.414 5.414 10 C 0.050 3.950 11 C 0.567 3.433 12 O -0.528 6.528 13 N -0.692 5.692 14 C 0.160 3.840 15 H 0.073 0.927 16 C -0.145 4.145 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.248 4.248 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.178 3.822 28 C -0.127 4.127 29 H 0.077 0.923 30 C -0.139 4.139 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.412 0.588 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.252 0.748 47 H 0.090 0.910 48 H 0.018 0.982 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.722 1.058 -5.452 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.179 6.179 5 C 0.085 3.915 6 C -0.206 4.206 7 C -0.131 4.131 8 C -0.102 4.102 9 N -0.126 5.126 10 C -0.089 4.089 11 C 0.351 3.649 12 O -0.404 6.404 13 N -0.344 5.344 14 C 0.056 3.944 15 H 0.091 0.909 16 C -0.185 4.185 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.378 4.378 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.051 3.949 28 C -0.148 4.148 29 H 0.096 0.904 30 C -0.197 4.197 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.250 0.750 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.036 0.964 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.969 0.151 -5.483 22.644 hybrid contribution -0.048 0.724 0.310 0.789 sum -22.017 0.875 -5.173 22.634 Atomic orbital electron populations 1.21694 0.94360 1.02571 1.01962 1.21450 0.95606 0.94567 1.04385 1.23011 0.78933 0.99464 1.01110 1.86420 1.20512 1.24646 1.86353 1.20016 0.92310 0.85600 0.93572 1.21713 1.00861 0.91923 1.06097 1.22191 0.95813 0.98304 0.96842 1.22748 0.91270 0.96560 0.99592 1.67701 1.39816 0.97401 1.07638 1.20890 0.88535 0.93192 1.06322 1.17579 0.82605 0.87008 0.77709 1.90791 1.71892 1.27430 1.50279 1.46008 1.04961 1.11269 1.72177 1.20917 0.91009 0.85783 0.96721 0.90928 1.22381 1.00029 1.00153 0.95962 1.20855 0.88286 0.94116 0.94601 1.44061 1.02420 1.78319 1.06613 1.19222 0.90024 1.14752 1.13807 0.91708 1.25015 0.99071 0.95142 1.00497 1.70040 1.30971 1.13266 1.40346 0.86258 0.85201 0.77585 0.77948 1.20329 1.21619 1.21843 1.20805 1.00327 0.90846 0.82874 1.22119 0.95123 1.02638 0.94887 0.90429 1.21720 1.01228 1.00574 0.96167 0.92509 0.91661 0.92468 0.90523 0.90460 0.92037 0.92087 0.83940 0.84102 0.81739 0.74959 0.91465 0.92588 0.93053 0.96427 0.93766 0.89162 0.96365 0.92664 0.93791 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -1.03 6.30 -26.73 -0.17 -1.20 16 3 C 0.05 0.46 4.76 37.15 0.18 0.64 16 4 O -0.27 -3.76 8.20 -40.59 -0.33 -4.10 16 5 C 0.14 1.87 6.71 -38.56 -0.26 1.61 16 6 C -0.18 -1.78 9.13 -39.15 -0.36 -2.14 16 7 C -0.11 -0.99 10.10 -39.36 -0.40 -1.39 16 8 C 0.06 0.66 11.17 -17.55 -0.20 0.47 16 9 N -0.41 -6.24 9.54 -9.71 -0.09 -6.33 16 10 C 0.05 0.81 6.76 -82.88 -0.56 0.25 16 11 C 0.57 10.45 7.77 -12.34 -0.10 10.35 16 12 O -0.53 -10.72 14.80 -16.64 -0.25 -10.97 16 13 N -0.69 -12.70 3.59 -54.71 -0.20 -12.89 16 14 C 0.16 2.98 2.21 -67.89 -0.15 2.83 16 15 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 16 C -0.15 -2.81 5.77 -26.61 -0.15 -2.96 16 17 C 0.15 3.26 6.26 -3.71 -0.02 3.24 16 18 N -0.59 -14.84 2.99 -172.32 -0.52 -15.36 16 19 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 20 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -25.93 11.19 55.49 0.62 -25.31 16 23 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.18 4.14 4.30 -3.71 -0.02 4.13 16 28 C -0.13 -2.43 2.67 -90.50 -0.24 -2.67 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 C -0.14 -2.32 9.06 37.15 0.34 -1.98 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 37 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 38 H 0.14 0.97 6.46 -52.49 -0.34 0.63 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.41 7.84 6.05 -40.82 -0.25 7.60 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.02 0.41 7.74 -51.93 -0.40 0.00 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.09 2.37 6.03 -51.93 -0.31 2.06 16 48 H 0.02 0.45 6.64 -51.93 -0.34 0.10 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.05 0.85 7.54 -51.92 -0.39 0.46 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -32.56 403.69 -9.94 -42.50 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.26 Total: 5.98 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.97 Total: 3.65 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.18 Total: -59.89 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.58 Total: -15.06 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.56 -9.94 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942594340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.862 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds