Wall clock time and date at job start Wed Apr 1 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47069 * 2 1 4 4 O 1.42905 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.35645 * 117.00120 * 180.02562 * 4 3 2 6 6 C 1.39345 * 120.54027 * 0.26750 * 5 4 3 7 7 C 1.38302 * 118.43824 * 180.26271 * 6 5 4 8 8 C 1.38767 * 119.44576 * 359.73165 * 7 6 5 9 9 N 1.31370 * 121.06514 * 0.02562 * 8 7 6 10 10 C 1.32857 * 121.69821 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78406 * 180.02562 * 10 9 8 12 12 O 1.21561 * 119.99976 * 180.02562 * 11 10 9 13 13 N 1.34771 * 120.00200 * 0.02562 * 11 10 9 14 14 C 1.46501 * 120.00334 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.44545 * 35.03197 * 14 13 11 16 16 C 1.53039 * 109.45921 * 275.06941 * 14 13 11 17 17 C 1.53196 * 109.31326 * 301.34165 * 16 14 13 18 18 N 1.46929 * 108.77668 * 305.36787 * 17 16 14 19 19 C 1.36935 * 120.62997 * 233.63171 * 18 17 16 20 20 H 1.07999 * 120.00259 * 27.65626 * 19 18 17 21 21 C 1.38812 * 119.99596 * 207.65815 * 19 18 17 22 22 N 1.31614 * 120.00311 * 17.36806 * 21 19 18 23 23 Si 1.86810 * 119.99778 * 197.37036 * 21 19 18 24 24 H 1.48501 * 109.46671 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47133 * 119.99909 * 23 21 19 26 26 H 1.48502 * 109.46949 * 240.00175 * 23 21 19 27 27 C 1.46927 * 118.73941 * 53.60249 * 18 17 16 28 28 C 1.53041 * 109.46172 * 154.99894 * 14 13 11 29 29 H 1.09000 * 109.49766 * 178.60428 * 28 14 13 30 30 C 1.52992 * 109.52528 * 298.68679 * 28 14 13 31 31 H 1.08995 * 109.47363 * 59.99855 * 1 2 3 32 32 H 1.08999 * 109.47243 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46969 * 299.99778 * 1 2 3 34 34 H 1.09003 * 109.46476 * 240.00226 * 2 1 3 35 35 H 1.09002 * 109.47005 * 120.00138 * 2 1 3 36 36 H 1.08999 * 109.47043 * 60.00268 * 3 2 1 37 37 H 1.09002 * 109.47320 * 299.99946 * 3 2 1 38 38 H 1.07998 * 120.78242 * 359.97438 * 6 5 4 39 39 H 1.08000 * 120.28194 * 179.70937 * 7 6 5 40 40 H 1.07994 * 119.46820 * 179.97438 * 8 7 6 41 41 H 0.97001 * 120.00090 * 359.97438 * 13 11 10 42 42 H 1.09000 * 109.50254 * 181.39306 * 16 14 13 43 43 H 1.09004 * 109.50178 * 61.29325 * 16 14 13 44 44 H 1.08995 * 109.59142 * 185.57837 * 17 16 14 45 45 H 1.08999 * 109.58383 * 65.15020 * 17 16 14 46 46 H 0.97008 * 119.99860 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.58556 * 186.60837 * 27 18 17 48 48 H 1.09006 * 109.58207 * 66.17874 * 27 18 17 49 49 H 1.08999 * 109.47524 * 179.97438 * 30 28 14 50 50 H 1.09002 * 109.47080 * 299.92187 * 30 28 14 51 51 H 1.09008 * 109.47039 * 59.92135 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0849 2.6510 -0.0001 6 6 3.3370 3.8268 0.0065 7 6 4.0097 5.0352 0.0011 8 6 5.3973 5.0435 -0.0050 9 7 6.0819 3.9223 -0.0062 10 6 5.4810 2.7375 -0.0012 11 6 6.2932 1.5022 -0.0022 12 8 5.7474 0.4160 0.0019 13 7 7.6386 1.5802 -0.0077 14 6 8.4434 0.3561 -0.0082 15 1 7.9372 -0.4108 -0.5945 16 6 8.6227 -0.1367 1.4296 17 6 9.3031 0.9569 2.2590 18 7 10.5543 1.3454 1.5938 19 6 11.7412 1.3303 2.2765 20 1 11.8786 0.6523 3.1059 21 6 12.7677 2.1867 1.9027 22 7 12.5104 3.2304 1.1433 23 14 14.5145 1.8576 2.4774 24 1 14.5374 0.6310 3.3142 25 1 15.3965 1.6691 1.2976 26 1 14.9979 3.0114 3.2776 27 6 10.5078 1.7497 0.1820 28 6 9.8139 0.6472 -0.6241 29 1 10.4221 -0.2571 -0.6021 30 6 9.6363 1.1081 -2.0721 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 2.2575 3.7952 0.0109 39 1 3.4596 5.9647 0.0013 40 1 5.9229 5.9869 -0.0096 41 1 8.0741 2.4470 -0.0113 42 1 9.2421 -1.0336 1.4322 43 1 7.6477 -0.3661 1.8598 44 1 9.5225 0.5759 3.2563 45 1 8.6446 1.8223 2.3328 46 1 13.2278 3.8290 0.8824 47 1 11.5221 1.8917 -0.1909 48 1 9.9475 2.6798 0.0866 49 1 10.6127 1.3156 -2.5098 50 1 9.1414 0.3238 -2.6449 51 1 9.0280 2.0125 -2.0935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942594340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:33 Heat of formation + Delta-G solvation = -42.424785 kcal Electronic energy + Delta-G solvation = -31664.439337 eV Core-core repulsion = 27563.752881 eV Total energy + Delta-G solvation = -4100.686457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.00168 -40.78824 -39.37450 -38.89042 -35.90387 -34.90809 -33.94020 -33.53658 -33.08203 -31.69746 -31.01370 -27.64510 -27.53029 -27.16140 -25.69492 -24.13168 -23.71755 -22.72587 -22.48196 -21.77076 -20.05020 -19.48959 -18.83535 -18.64433 -17.89004 -17.40356 -16.89968 -16.52500 -16.37569 -16.12676 -15.66066 -15.51216 -15.45725 -15.13765 -15.02364 -14.71819 -14.60240 -14.58862 -14.26071 -14.03810 -13.59474 -13.59285 -13.07216 -13.02304 -12.96525 -12.93718 -12.77190 -12.56044 -12.52586 -12.48603 -12.14059 -11.93586 -11.79717 -11.70423 -11.62446 -11.46311 -11.19622 -11.13171 -10.83235 -10.55501 -10.53547 -9.95921 -9.47098 -8.65616 -7.85038 -5.29860 -0.33936 0.23149 1.47067 1.49235 1.59609 1.80839 2.04147 2.22389 2.52591 2.85285 3.25192 3.28909 3.58829 3.66525 3.71015 3.83313 3.91973 3.95485 4.03539 4.05425 4.16241 4.19678 4.26252 4.33501 4.49048 4.52250 4.53727 4.58239 4.67653 4.73746 4.76762 4.83550 4.91119 4.95747 4.99754 5.02765 5.08243 5.13511 5.15674 5.16800 5.28249 5.31687 5.34275 5.46281 5.51077 5.63945 5.67255 5.77353 6.24852 6.40944 6.53821 6.85990 7.16795 7.27389 7.86299 8.39607 9.21005 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.002716 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.839897 B =10306.590974 C =11031.744757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.043 3.957 4 O -0.302 6.302 5 C 0.127 3.873 6 C -0.171 4.171 7 C -0.085 4.085 8 C 0.049 3.951 9 N -0.448 5.448 10 C 0.004 3.996 11 C 0.564 3.436 12 O -0.556 6.556 13 N -0.693 5.693 14 C 0.165 3.835 15 H 0.078 0.922 16 C -0.133 4.133 17 C 0.151 3.849 18 N -0.606 5.606 19 C -0.263 4.263 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.293 1.293 27 C 0.190 3.810 28 C -0.115 4.115 29 H 0.076 0.924 30 C -0.131 4.131 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.181 0.819 39 H 0.190 0.810 40 H 0.189 0.811 41 H 0.408 0.592 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.006 0.994 46 H 0.250 0.750 47 H 0.059 0.941 48 H 0.002 0.998 49 H 0.057 0.943 50 H 0.064 0.936 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.020 2.118 -5.832 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.032 4.032 4 O -0.213 6.213 5 C 0.076 3.924 6 C -0.197 4.197 7 C -0.105 4.105 8 C -0.113 4.113 9 N -0.159 5.159 10 C -0.133 4.133 11 C 0.350 3.650 12 O -0.435 6.435 13 N -0.344 5.344 14 C 0.061 3.939 15 H 0.096 0.904 16 C -0.173 4.173 17 C 0.026 3.974 18 N -0.329 5.329 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.575 5.575 23 Si 0.794 3.206 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.220 1.220 27 C 0.064 3.936 28 C -0.135 4.135 29 H 0.095 0.905 30 C -0.189 4.189 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.198 0.802 39 H 0.208 0.792 40 H 0.206 0.794 41 H 0.245 0.755 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.020 0.980 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.290 1.180 -5.863 25.015 hybrid contribution 0.539 0.507 0.462 0.872 sum -23.751 1.686 -5.400 24.415 Atomic orbital electron populations 1.21659 0.91984 1.03197 1.03039 1.21478 0.97549 0.94243 1.02836 1.23324 0.76773 1.00098 1.02986 1.86381 1.23034 1.25485 1.86385 1.20180 0.91818 0.86885 0.93493 1.22159 1.02506 0.90659 1.04399 1.22706 0.94852 0.99852 0.93058 1.23349 0.92936 0.96207 0.98850 1.67588 1.41335 0.98110 1.08905 1.20522 0.89483 0.92549 1.10735 1.18047 0.82435 0.87928 0.76559 1.90748 1.72276 1.28779 1.51697 1.45969 1.05253 1.10633 1.72583 1.20810 0.90752 0.86285 0.96093 0.90398 1.22238 0.99771 0.99226 0.96071 1.20858 0.87233 0.94446 0.94913 1.44288 1.02748 1.78468 1.07429 1.19495 0.91189 1.14589 1.14006 0.91926 1.25738 1.02508 0.94991 1.01035 1.70182 1.31780 1.14021 1.41510 0.85244 0.80559 0.77423 0.77404 1.19447 1.21489 1.21989 1.20584 0.98641 0.91684 0.82685 1.21933 0.94877 1.00885 0.95828 0.90544 1.21643 1.01629 1.01073 0.94517 0.91303 0.91348 0.91430 0.91999 0.92185 0.90127 0.89914 0.80222 0.79248 0.79434 0.75490 0.90902 0.92299 0.93257 0.97574 0.94051 0.92231 0.98043 0.92346 0.91730 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.12 -2.00 6.30 30.59 0.19 -1.81 16 3 C 0.04 0.70 4.76 71.98 0.34 1.04 16 4 O -0.30 -8.38 8.20 -68.61 -0.56 -8.94 16 5 C 0.13 3.40 6.71 22.93 0.15 3.55 16 6 C -0.17 -2.81 9.13 22.55 0.21 -2.60 16 7 C -0.09 -1.16 10.10 22.41 0.23 -0.94 16 8 C 0.05 1.00 11.17 84.89 0.95 1.95 16 9 N -0.45 -13.55 9.54 -184.64 -1.76 -15.31 16 10 C 0.00 0.12 6.76 41.93 0.28 0.41 16 11 C 0.56 21.60 7.77 86.78 0.67 22.27 16 12 O -0.56 -23.46 14.80 17.08 0.25 -23.21 16 13 N -0.69 -26.39 3.59 -445.28 -1.60 -27.99 16 14 C 0.17 6.27 2.21 45.02 0.10 6.37 16 15 H 0.08 2.92 7.58 -2.39 -0.02 2.90 16 16 C -0.13 -5.24 5.77 30.67 0.18 -5.07 16 17 C 0.15 6.88 6.26 86.36 0.54 7.42 16 18 N -0.61 -31.29 2.99 -699.09 -2.09 -33.39 16 19 C -0.26 -14.75 9.58 84.03 0.81 -13.94 16 20 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 21 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 22 N -0.93 -54.79 11.19 21.65 0.24 -54.54 16 23 Si 0.97 45.37 29.59 68.60 2.03 47.40 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 C 0.19 9.17 4.30 86.36 0.37 9.54 16 28 C -0.11 -4.46 2.67 -10.72 -0.03 -4.49 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 C -0.13 -4.35 9.06 71.98 0.65 -3.69 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 0.99 7.68 -2.39 -0.02 0.97 16 37 H 0.08 0.98 7.71 -2.39 -0.02 0.96 16 38 H 0.18 1.52 6.46 -2.91 -0.02 1.50 16 39 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.41 16.31 6.05 -92.71 -0.56 15.74 16 42 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.05 2.21 7.93 -2.39 -0.02 2.20 16 45 H 0.01 0.30 7.74 -2.39 -0.02 0.28 16 46 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 47 H 0.06 3.25 6.03 -2.39 -0.01 3.24 16 48 H 0.00 0.08 6.64 -2.38 -0.02 0.07 16 49 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.05 1.64 7.54 -2.38 -0.02 1.62 16 Total: -1.00 -74.27 403.69 3.65 -70.62 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.37 Total: 28.22 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.77 Total: 17.14 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -5.21 Total: -131.23 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.31 Total: -32.15 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.27 3.65 -70.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942594340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.197 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds