Wall clock time and date at job start Wed Apr 1 2020 05:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46850 * 2 1 4 4 O 1.42900 * 109.47390 * 180.02562 * 3 2 1 5 5 C 1.35643 * 117.00523 * 180.02562 * 4 3 2 6 6 C 1.39347 * 120.53678 * 359.97438 * 5 4 3 7 7 C 1.38305 * 118.43766 * 180.23298 * 6 5 4 8 8 C 1.38770 * 119.44483 * 359.52313 * 7 6 5 9 9 N 1.31374 * 121.06570 * 0.48756 * 8 7 6 10 10 C 1.32858 * 121.69660 * 359.74811 * 9 8 7 11 11 C 1.47826 * 119.78386 * 179.97438 * 10 9 8 12 12 O 1.21564 * 120.00216 * 180.02562 * 11 10 9 13 13 N 1.34782 * 120.00347 * 0.02562 * 11 10 9 14 14 C 1.46499 * 120.00425 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.45908 * 35.02969 * 14 13 11 16 16 C 1.53041 * 109.45994 * 275.07254 * 14 13 11 17 17 C 1.53198 * 109.31148 * 301.34422 * 16 14 13 18 18 N 1.46930 * 108.77354 * 305.36315 * 17 16 14 19 19 C 1.36928 * 120.63247 * 233.62880 * 18 17 16 20 20 H 1.08000 * 120.00038 * 150.86694 * 19 18 17 21 21 C 1.38809 * 120.00444 * 330.86795 * 19 18 17 22 22 N 1.31615 * 120.00803 * 160.75259 * 21 19 18 23 23 Si 1.86799 * 119.99627 * 340.75748 * 21 19 18 24 24 H 1.48501 * 109.47518 * 92.25438 * 23 21 19 25 25 H 1.48507 * 109.47160 * 212.25411 * 23 21 19 26 26 H 1.48501 * 109.47549 * 332.25427 * 23 21 19 27 27 C 1.46929 * 118.73736 * 53.61376 * 18 17 16 28 28 H 1.08999 * 109.58785 * 66.17118 * 27 18 17 29 29 C 1.52996 * 109.59000 * 186.60169 * 27 18 17 30 30 C 1.53044 * 109.45924 * 155.00158 * 14 13 11 31 31 H 1.09001 * 109.46995 * 299.99119 * 1 2 3 32 32 H 1.09001 * 109.47661 * 59.99763 * 1 2 3 33 33 H 1.09001 * 109.46959 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46719 * 240.00469 * 2 1 3 35 35 H 1.08996 * 109.47243 * 120.00081 * 2 1 3 36 36 H 1.09002 * 109.47236 * 59.99948 * 3 2 1 37 37 H 1.09001 * 109.47182 * 300.00530 * 3 2 1 38 38 H 1.08002 * 120.78327 * 359.95838 * 6 5 4 39 39 H 1.07997 * 120.27857 * 179.74695 * 7 6 5 40 40 H 1.08000 * 119.46810 * 180.25259 * 8 7 6 41 41 H 0.97001 * 119.99334 * 0.02562 * 13 11 10 42 42 H 1.08996 * 109.50120 * 61.29371 * 16 14 13 43 43 H 1.09000 * 109.49548 * 181.39375 * 16 14 13 44 44 H 1.09000 * 109.58367 * 185.58386 * 17 16 14 45 45 H 1.08990 * 109.70437 * 65.22440 * 17 16 14 46 46 H 0.96998 * 120.00773 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.47302 * 179.28570 * 29 27 18 48 48 H 1.09005 * 109.46879 * 299.29328 * 29 27 18 49 49 H 1.09007 * 109.47034 * 59.28530 * 29 27 18 50 50 H 1.08996 * 109.49089 * 178.60904 * 30 14 13 51 51 H 1.08998 * 109.49608 * 298.67144 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0847 2.6512 -0.0001 6 6 3.3368 3.8269 0.0003 7 6 4.0093 5.0354 -0.0041 8 6 5.3970 5.0438 0.0011 9 7 6.0817 3.9226 0.0007 10 6 5.4809 2.7377 0.0002 11 6 6.2930 1.5025 -0.0008 12 8 5.7473 0.4163 -0.0017 13 7 7.6386 1.5807 -0.0008 14 6 8.4435 0.3566 -0.0012 15 1 7.9398 -0.4090 -0.5914 16 6 8.6169 -0.1401 1.4359 17 6 9.2940 0.9515 2.2709 18 7 10.5478 1.3417 1.6118 19 6 11.7319 1.3250 2.2992 20 1 12.6584 1.1444 1.7744 21 6 11.7416 1.5401 3.6705 22 7 12.7774 1.1615 4.3889 23 14 10.2843 2.3667 4.4964 24 1 9.3277 1.3317 4.9643 25 1 10.7589 3.1628 5.6568 26 1 9.6075 3.2631 3.5249 27 6 10.5069 1.7498 0.2009 28 1 9.9470 2.6801 0.1057 29 6 11.9327 1.9506 -0.3165 30 6 9.8163 0.6494 -0.6109 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6765 1.9563 -0.8899 38 1 2.2572 3.7953 -0.0003 39 1 3.4592 5.9647 -0.0080 40 1 5.9226 5.9873 0.0017 41 1 8.0740 2.4475 0.0003 42 1 7.6404 -0.3706 1.8616 43 1 9.2364 -1.0369 1.4386 44 1 9.5095 0.5677 3.2681 45 1 8.6362 1.8172 2.3468 46 1 12.7840 1.3115 5.3472 47 1 11.9006 2.2410 -1.3666 48 1 12.4223 2.7338 0.2624 49 1 12.4910 1.0201 -0.2137 50 1 10.4244 -0.2550 -0.5889 51 1 9.6933 0.9801 -1.6422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947685982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:50 Heat of formation + Delta-G solvation = -15.768652 kcal Electronic energy + Delta-G solvation = -31754.952218 eV Core-core repulsion = 27655.421658 eV Total energy + Delta-G solvation = -4099.530560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.10307 -39.48841 -38.55500 -37.63034 -34.45722 -34.17709 -32.78161 -32.22071 -31.43489 -30.78494 -29.92234 -27.05187 -26.53925 -25.16321 -24.53043 -23.29374 -22.54142 -21.96273 -21.08789 -20.41220 -18.74764 -18.59355 -17.82735 -17.14514 -16.68955 -16.35944 -15.60923 -15.38831 -15.12214 -15.09791 -14.72671 -14.49429 -14.27557 -14.21017 -13.74836 -13.61235 -13.57952 -13.08256 -12.99458 -12.91668 -12.48450 -12.30995 -12.27911 -11.94266 -11.82736 -11.73879 -11.51983 -11.35332 -11.19791 -11.02667 -10.99648 -10.56374 -10.29654 -10.18991 -10.17085 -10.10530 -9.89618 -9.56440 -9.51897 -9.30482 -8.78405 -8.61534 -8.43842 -6.85053 -5.87661 -3.24455 0.49004 0.97540 2.76617 2.85193 3.33737 3.39551 3.53891 3.58461 3.78828 4.13014 4.28476 4.42522 4.49188 4.54191 4.60426 4.72080 4.80816 4.85169 4.95981 4.99779 5.06660 5.22916 5.25828 5.32964 5.35018 5.53334 5.59423 5.61677 5.64342 5.66325 5.70769 5.84516 5.85736 6.03505 6.10668 6.13940 6.18379 6.32328 6.42410 6.46993 6.47757 6.58577 6.75862 6.80535 6.95358 6.97893 7.03344 7.11583 7.52637 7.92002 8.05436 8.42219 8.50954 9.01984 9.80627 10.19039 11.28096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.003034 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.356784 B = 9227.681955 C = 9408.555281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.269 6.269 5 C 0.138 3.862 6 C -0.179 4.179 7 C -0.110 4.110 8 C 0.058 3.942 9 N -0.417 5.417 10 C 0.048 3.952 11 C 0.568 3.432 12 O -0.522 6.522 13 N -0.700 5.700 14 C 0.153 3.847 15 H 0.079 0.921 16 C -0.145 4.145 17 C 0.130 3.870 18 N -0.602 5.602 19 C -0.255 4.255 20 H 0.092 0.908 21 C 0.024 3.976 22 N -0.911 5.911 23 Si 0.880 3.120 24 H -0.291 1.291 25 H -0.306 1.306 26 H -0.270 1.270 27 C 0.171 3.829 28 H 0.027 0.973 29 C -0.136 4.136 30 C -0.139 4.139 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.166 0.834 41 H 0.409 0.591 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.261 0.739 47 H 0.040 0.960 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.080 0.920 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.134 5.322 -12.372 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.179 6.179 5 C 0.087 3.913 6 C -0.205 4.205 7 C -0.130 4.130 8 C -0.103 4.103 9 N -0.129 5.129 10 C -0.092 4.092 11 C 0.352 3.648 12 O -0.398 6.398 13 N -0.352 5.352 14 C 0.049 3.951 15 H 0.097 0.903 16 C -0.185 4.185 17 C 0.004 3.996 18 N -0.326 5.326 19 C -0.383 4.383 20 H 0.109 0.891 21 C -0.175 4.175 22 N -0.555 5.555 23 Si 0.711 3.289 24 H -0.219 1.219 25 H -0.234 1.234 26 H -0.195 1.195 27 C 0.065 3.935 28 H 0.045 0.955 29 C -0.194 4.194 30 C -0.178 4.178 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.183 0.817 41 H 0.247 0.753 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.098 0.902 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.409 4.285 -12.220 25.881 hybrid contribution -1.820 1.241 0.775 2.335 sum -24.229 5.526 -11.445 27.360 Atomic orbital electron populations 1.21695 0.94300 1.02627 1.01972 1.21454 0.95662 0.94488 1.04422 1.23030 0.78765 0.99573 1.01163 1.86416 1.20671 1.24599 1.86249 1.20009 0.92275 0.85672 0.93330 1.21736 1.00956 0.91887 1.05928 1.22199 0.95788 0.98363 0.96628 1.22731 0.91339 0.96473 0.99727 1.67662 1.39921 0.97443 1.07868 1.20837 0.88594 0.93099 1.06632 1.17587 0.82516 0.87103 0.77548 1.90807 1.71802 1.27408 1.49758 1.46022 1.05187 1.11031 1.72951 1.20925 0.90898 0.86009 0.97223 0.90297 1.22374 1.00358 1.00308 0.95480 1.21270 0.87652 0.94479 0.96187 1.44444 1.04247 1.76617 1.07308 1.18924 0.86089 1.42738 0.90556 0.89100 1.25296 0.96235 0.99356 0.96563 1.69813 1.31025 1.48538 1.06103 0.86988 0.82940 0.80298 0.78643 1.21854 1.23412 1.19536 1.20412 0.95024 0.93273 0.84832 0.95509 1.21805 0.96693 1.02668 0.98225 1.22357 0.95053 1.01928 0.98505 0.92458 0.92490 0.91612 0.90496 0.90428 0.91982 0.92019 0.83821 0.84008 0.81735 0.75327 0.92350 0.90731 0.91161 0.95823 0.92910 0.94099 0.91712 0.92264 0.90187 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.05 0.44 4.76 37.16 0.18 0.62 16 4 O -0.27 -3.67 8.20 -40.58 -0.33 -4.00 16 5 C 0.14 1.83 6.71 -38.55 -0.26 1.57 16 6 C -0.18 -1.68 9.13 -39.14 -0.36 -2.04 16 7 C -0.11 -0.91 10.10 -39.36 -0.40 -1.30 16 8 C 0.06 0.60 11.17 -17.55 -0.20 0.41 16 9 N -0.42 -5.89 9.54 -9.71 -0.09 -5.98 16 10 C 0.05 0.74 6.76 -82.89 -0.56 0.18 16 11 C 0.57 10.07 7.77 -12.34 -0.10 9.98 16 12 O -0.52 -10.32 14.80 -16.64 -0.25 -10.57 16 13 N -0.70 -12.04 4.26 -54.71 -0.23 -12.27 16 14 C 0.15 2.67 2.78 -67.89 -0.19 2.48 16 15 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 16 C -0.15 -2.84 5.77 -26.61 -0.15 -2.99 16 17 C 0.13 2.96 3.94 -3.71 -0.01 2.94 16 18 N -0.60 -14.14 2.75 -164.77 -0.45 -14.59 16 19 C -0.25 -6.99 9.05 -15.06 -0.14 -7.12 16 20 H 0.09 2.61 6.39 -52.49 -0.34 2.28 16 21 C 0.02 0.70 5.24 -17.43 -0.09 0.61 16 22 N -0.91 -28.13 13.97 55.49 0.78 -27.35 16 23 Si 0.88 23.10 24.34 -169.99 -4.14 18.96 16 24 H -0.29 -7.53 6.63 56.52 0.37 -7.16 16 25 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 26 H -0.27 -7.01 6.63 56.52 0.37 -6.63 16 27 C 0.17 3.30 3.20 -67.60 -0.22 3.08 16 28 H 0.03 0.52 6.64 -51.93 -0.34 0.18 16 29 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 30 C -0.14 -2.30 5.07 -26.61 -0.13 -2.43 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 37 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 38 H 0.14 0.91 6.46 -52.49 -0.34 0.58 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.41 6.97 6.19 -40.82 -0.25 6.72 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.07 1.77 4.62 -51.93 -0.24 1.53 16 45 H 0.02 0.56 6.63 -51.93 -0.34 0.21 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 49 H 0.06 1.13 7.40 -51.92 -0.38 0.74 16 50 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -34.19 394.63 -9.00 -43.19 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.09 Total: 4.53 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.13 Total: 2.15 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.00 Total: -60.20 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.58 Total: -14.57 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.14 Total: 18.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.19 -9.00 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947685982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.417 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds