Wall clock time and date at job start Wed Apr 1 2020 05:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46850 * 2 1 4 4 O 1.42900 * 109.47390 * 180.02562 * 3 2 1 5 5 C 1.35643 * 117.00523 * 180.02562 * 4 3 2 6 6 C 1.39347 * 120.53678 * 359.97438 * 5 4 3 7 7 C 1.38305 * 118.43766 * 180.23298 * 6 5 4 8 8 C 1.38770 * 119.44483 * 359.52313 * 7 6 5 9 9 N 1.31374 * 121.06570 * 0.48756 * 8 7 6 10 10 C 1.32858 * 121.69660 * 359.74811 * 9 8 7 11 11 C 1.47826 * 119.78386 * 179.97438 * 10 9 8 12 12 O 1.21564 * 120.00216 * 180.02562 * 11 10 9 13 13 N 1.34782 * 120.00347 * 0.02562 * 11 10 9 14 14 C 1.46499 * 120.00425 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.45908 * 35.02969 * 14 13 11 16 16 C 1.53041 * 109.45994 * 275.07254 * 14 13 11 17 17 C 1.53198 * 109.31148 * 301.34422 * 16 14 13 18 18 N 1.46930 * 108.77354 * 305.36315 * 17 16 14 19 19 C 1.36928 * 120.63247 * 233.62880 * 18 17 16 20 20 H 1.08000 * 120.00038 * 150.86694 * 19 18 17 21 21 C 1.38809 * 120.00444 * 330.86795 * 19 18 17 22 22 N 1.31615 * 120.00803 * 160.75259 * 21 19 18 23 23 Si 1.86799 * 119.99627 * 340.75748 * 21 19 18 24 24 H 1.48501 * 109.47518 * 92.25438 * 23 21 19 25 25 H 1.48507 * 109.47160 * 212.25411 * 23 21 19 26 26 H 1.48501 * 109.47549 * 332.25427 * 23 21 19 27 27 C 1.46929 * 118.73736 * 53.61376 * 18 17 16 28 28 H 1.08999 * 109.58785 * 66.17118 * 27 18 17 29 29 C 1.52996 * 109.59000 * 186.60169 * 27 18 17 30 30 C 1.53044 * 109.45924 * 155.00158 * 14 13 11 31 31 H 1.09001 * 109.46995 * 299.99119 * 1 2 3 32 32 H 1.09001 * 109.47661 * 59.99763 * 1 2 3 33 33 H 1.09001 * 109.46959 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46719 * 240.00469 * 2 1 3 35 35 H 1.08996 * 109.47243 * 120.00081 * 2 1 3 36 36 H 1.09002 * 109.47236 * 59.99948 * 3 2 1 37 37 H 1.09001 * 109.47182 * 300.00530 * 3 2 1 38 38 H 1.08002 * 120.78327 * 359.95838 * 6 5 4 39 39 H 1.07997 * 120.27857 * 179.74695 * 7 6 5 40 40 H 1.08000 * 119.46810 * 180.25259 * 8 7 6 41 41 H 0.97001 * 119.99334 * 0.02562 * 13 11 10 42 42 H 1.08996 * 109.50120 * 61.29371 * 16 14 13 43 43 H 1.09000 * 109.49548 * 181.39375 * 16 14 13 44 44 H 1.09000 * 109.58367 * 185.58386 * 17 16 14 45 45 H 1.08990 * 109.70437 * 65.22440 * 17 16 14 46 46 H 0.96998 * 120.00773 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.47302 * 179.28570 * 29 27 18 48 48 H 1.09005 * 109.46879 * 299.29328 * 29 27 18 49 49 H 1.09007 * 109.47034 * 59.28530 * 29 27 18 50 50 H 1.08996 * 109.49089 * 178.60904 * 30 14 13 51 51 H 1.08998 * 109.49608 * 298.67144 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0847 2.6512 -0.0001 6 6 3.3368 3.8269 0.0003 7 6 4.0093 5.0354 -0.0041 8 6 5.3970 5.0438 0.0011 9 7 6.0817 3.9226 0.0007 10 6 5.4809 2.7377 0.0002 11 6 6.2930 1.5025 -0.0008 12 8 5.7473 0.4163 -0.0017 13 7 7.6386 1.5807 -0.0008 14 6 8.4435 0.3566 -0.0012 15 1 7.9398 -0.4090 -0.5914 16 6 8.6169 -0.1401 1.4359 17 6 9.2940 0.9515 2.2709 18 7 10.5478 1.3417 1.6118 19 6 11.7319 1.3250 2.2992 20 1 12.6584 1.1444 1.7744 21 6 11.7416 1.5401 3.6705 22 7 12.7774 1.1615 4.3889 23 14 10.2843 2.3667 4.4964 24 1 9.3277 1.3317 4.9643 25 1 10.7589 3.1628 5.6568 26 1 9.6075 3.2631 3.5249 27 6 10.5069 1.7498 0.2009 28 1 9.9470 2.6801 0.1057 29 6 11.9327 1.9506 -0.3165 30 6 9.8163 0.6494 -0.6109 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6765 1.9563 -0.8899 38 1 2.2572 3.7953 -0.0003 39 1 3.4592 5.9647 -0.0080 40 1 5.9226 5.9873 0.0017 41 1 8.0740 2.4475 0.0003 42 1 7.6404 -0.3706 1.8616 43 1 9.2364 -1.0369 1.4386 44 1 9.5095 0.5677 3.2681 45 1 8.6362 1.8172 2.3468 46 1 12.7840 1.3115 5.3472 47 1 11.9006 2.2410 -1.3666 48 1 12.4223 2.7338 0.2624 49 1 12.4910 1.0201 -0.2137 50 1 10.4244 -0.2550 -0.5889 51 1 9.6933 0.9801 -1.6422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947685982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:49 Heat of formation + Delta-G solvation = -38.082828 kcal Electronic energy + Delta-G solvation = -31755.919833 eV Core-core repulsion = 27655.421658 eV Total energy + Delta-G solvation = -4100.498175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.03277 -40.82677 -39.43256 -39.11083 -35.96694 -34.93010 -34.15778 -33.62952 -33.06742 -31.97611 -31.25222 -28.16281 -27.64326 -26.74956 -25.78654 -24.35961 -24.03405 -22.83069 -22.25415 -21.85661 -20.37186 -19.51083 -18.81427 -18.42986 -17.90524 -17.44494 -17.35093 -16.58127 -16.44126 -16.31162 -16.16358 -15.51354 -15.41167 -15.33939 -15.17484 -14.86232 -14.68815 -14.51872 -14.23618 -14.15610 -13.64597 -13.62335 -13.32954 -13.26326 -13.05196 -12.99484 -12.84699 -12.66086 -12.55456 -12.26775 -12.16427 -11.96509 -11.86646 -11.74690 -11.65335 -11.42640 -11.26703 -11.15330 -10.86044 -10.70727 -10.61433 -10.05829 -9.51112 -8.85414 -8.12790 -5.44034 -0.37857 0.19890 1.27233 1.36621 1.45475 1.75806 2.00893 2.15726 2.42400 2.81390 3.06125 3.20565 3.30584 3.55588 3.67434 3.84015 3.88984 3.92733 3.93709 4.01584 4.10156 4.14455 4.23243 4.24483 4.44100 4.46610 4.49312 4.50950 4.53365 4.57750 4.74087 4.81076 4.84231 4.91862 4.94130 4.97648 5.00342 5.06198 5.08122 5.11114 5.14150 5.15431 5.29114 5.43489 5.47667 5.53661 5.60032 5.93610 6.21332 6.22225 6.47328 6.81065 6.95156 7.22270 7.67142 8.09001 9.06761 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.003034 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.356784 B = 9227.681955 C = 9408.555281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.043 3.957 4 O -0.303 6.303 5 C 0.126 3.874 6 C -0.172 4.172 7 C -0.086 4.086 8 C 0.050 3.950 9 N -0.445 5.445 10 C 0.002 3.998 11 C 0.564 3.436 12 O -0.555 6.555 13 N -0.699 5.699 14 C 0.158 3.842 15 H 0.085 0.915 16 C -0.136 4.136 17 C 0.133 3.867 18 N -0.612 5.612 19 C -0.229 4.229 20 H 0.073 0.927 21 C -0.032 4.032 22 N -0.957 5.957 23 Si 0.934 3.066 24 H -0.291 1.291 25 H -0.312 1.312 26 H -0.265 1.265 27 C 0.163 3.837 28 H 0.037 0.963 29 C -0.130 4.130 30 C -0.126 4.126 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.179 0.821 39 H 0.190 0.810 40 H 0.193 0.807 41 H 0.410 0.590 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.020 0.980 46 H 0.258 0.742 47 H 0.081 0.919 48 H 0.042 0.958 49 H 0.045 0.955 50 H 0.079 0.921 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.330 7.705 -14.388 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.031 4.031 4 O -0.214 6.214 5 C 0.075 3.925 6 C -0.198 4.198 7 C -0.105 4.105 8 C -0.112 4.112 9 N -0.157 5.157 10 C -0.134 4.134 11 C 0.350 3.650 12 O -0.433 6.433 13 N -0.351 5.351 14 C 0.054 3.946 15 H 0.103 0.897 16 C -0.176 4.176 17 C 0.007 3.993 18 N -0.337 5.337 19 C -0.359 4.359 20 H 0.091 0.909 21 C -0.227 4.227 22 N -0.604 5.604 23 Si 0.765 3.235 24 H -0.219 1.219 25 H -0.241 1.241 26 H -0.190 1.190 27 C 0.058 3.942 28 H 0.054 0.946 29 C -0.188 4.188 30 C -0.165 4.165 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.196 0.804 39 H 0.207 0.793 40 H 0.210 0.790 41 H 0.248 0.752 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.100 0.900 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.098 0.902 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.637 6.666 -14.278 30.093 hybrid contribution -0.914 0.575 1.299 1.689 sum -26.551 7.241 -12.979 30.428 Atomic orbital electron populations 1.21661 0.91982 1.03203 1.03050 1.21480 0.97567 0.94276 1.02821 1.23318 0.76753 1.00065 1.02990 1.86376 1.23062 1.25595 1.86376 1.20212 0.91947 0.86852 0.93490 1.22169 1.02519 0.90759 1.04388 1.22725 0.95053 0.99760 0.92968 1.23388 0.92845 0.96295 0.98655 1.67565 1.41177 0.97954 1.09001 1.20501 0.89416 0.92625 1.10896 1.18075 0.82574 0.87917 0.76442 1.90767 1.72320 1.28900 1.51302 1.45983 1.05296 1.10694 1.73119 1.20833 0.91656 0.86576 0.95531 0.89703 1.22253 0.99566 0.99144 0.96672 1.21152 0.87482 0.95145 0.95491 1.44597 1.03158 1.77014 1.08908 1.18942 0.86950 1.39585 0.90395 0.90915 1.25800 0.98265 1.01064 0.97537 1.69917 1.33165 1.51152 1.06174 0.86109 0.80509 0.79286 0.77607 1.21883 1.24093 1.19004 1.20702 0.96327 0.94586 0.82541 0.94561 1.21743 0.95365 1.01285 1.00357 1.22240 0.93841 1.00854 0.99543 0.91522 0.91177 0.91372 0.91870 0.92351 0.90274 0.89747 0.80388 0.79279 0.78997 0.75235 0.92797 0.90783 0.93897 0.96228 0.93258 0.90009 0.93914 0.93574 0.90191 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.97 6.30 30.59 0.19 -1.78 16 3 C 0.04 0.69 4.76 71.98 0.34 1.03 16 4 O -0.30 -8.14 8.20 -68.58 -0.56 -8.71 16 5 C 0.13 3.18 6.71 22.94 0.15 3.33 16 6 C -0.17 -2.59 9.13 22.55 0.21 -2.39 16 7 C -0.09 -1.00 10.10 22.41 0.23 -0.78 16 8 C 0.05 0.88 11.17 84.89 0.95 1.83 16 9 N -0.45 -11.93 9.54 -184.63 -1.76 -13.69 16 10 C 0.00 0.06 6.76 41.93 0.28 0.35 16 11 C 0.56 20.18 7.77 86.78 0.67 20.86 16 12 O -0.55 -22.53 14.80 17.07 0.25 -22.27 16 13 N -0.70 -23.76 4.26 -445.28 -1.90 -25.66 16 14 C 0.16 5.39 2.78 45.02 0.13 5.51 16 15 H 0.08 2.84 7.58 -2.39 -0.02 2.83 16 16 C -0.14 -5.36 5.77 30.67 0.18 -5.19 16 17 C 0.13 6.10 3.94 86.36 0.34 6.44 16 18 N -0.61 -28.75 2.75 -675.23 -1.86 -30.60 16 19 C -0.23 -12.78 9.05 84.03 0.76 -12.02 16 20 H 0.07 4.29 6.39 -2.91 -0.02 4.28 16 21 C -0.03 -1.93 5.24 84.86 0.44 -1.48 16 22 N -0.96 -60.97 13.97 21.65 0.30 -60.67 16 23 Si 0.93 49.10 24.34 68.60 1.67 50.77 16 24 H -0.29 -15.12 6.63 99.48 0.66 -14.46 16 25 H -0.31 -16.55 7.11 99.48 0.71 -15.85 16 26 H -0.27 -13.52 6.63 99.48 0.66 -12.86 16 27 C 0.16 6.08 3.20 44.97 0.14 6.22 16 28 H 0.04 1.33 6.64 -2.39 -0.02 1.31 16 29 C -0.13 -4.54 7.95 71.98 0.57 -3.97 16 30 C -0.13 -3.91 5.07 30.67 0.16 -3.75 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.96 7.70 -2.39 -0.02 0.94 16 37 H 0.08 0.93 7.70 -2.39 -0.02 0.91 16 38 H 0.18 1.34 6.46 -2.91 -0.02 1.33 16 39 H 0.19 0.44 8.06 -2.91 -0.02 0.41 16 40 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.41 13.66 6.19 -92.71 -0.57 13.08 16 42 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.04 2.21 4.62 -2.39 -0.01 2.19 16 45 H 0.02 0.93 6.63 -2.39 -0.02 0.91 16 46 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.04 1.66 7.66 -2.38 -0.02 1.64 16 49 H 0.05 1.71 7.40 -2.38 -0.02 1.70 16 50 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 51 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -78.83 394.63 2.88 -75.95 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.27 Total: 21.28 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.46 Total: 13.60 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.21 Total: -130.62 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.31 Total: -30.98 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.67 Total: 50.77 kcal Total: -78.83 2.88 -75.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947685982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.865 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds