Wall clock time and date at job start Wed Apr 1 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47441 * 2 1 4 4 O 1.42893 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.35651 * 116.99994 * 180.02562 * 4 3 2 6 6 C 1.39344 * 120.53795 * 359.71852 * 5 4 3 7 7 C 1.38306 * 118.43936 * 179.73601 * 6 5 4 8 8 C 1.38764 * 119.44224 * 0.52362 * 7 6 5 9 9 N 1.31376 * 121.07030 * 359.73998 * 8 7 6 10 10 C 1.32867 * 121.69485 * 0.02562 * 9 8 7 11 11 C 1.47827 * 119.78438 * 179.97438 * 10 9 8 12 12 O 1.21551 * 120.00107 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00123 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00021 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46288 * 34.97205 * 14 13 11 16 16 C 1.53036 * 109.45962 * 275.00004 * 14 13 11 17 17 C 1.53194 * 109.31513 * 178.61775 * 16 14 13 18 18 N 1.46918 * 108.77578 * 54.63129 * 17 16 14 19 19 C 1.36936 * 120.63064 * 126.41701 * 18 17 16 20 20 H 1.08006 * 120.00201 * 221.21851 * 19 18 17 21 21 C 1.38810 * 120.00001 * 41.21722 * 19 18 17 22 22 N 1.31617 * 120.00463 * 214.82979 * 21 19 18 23 23 Si 1.86800 * 119.99997 * 34.83365 * 21 19 18 24 24 H 1.48508 * 109.47208 * 84.62309 * 23 21 19 25 25 H 1.48498 * 109.47534 * 204.62717 * 23 21 19 26 26 H 1.48503 * 109.47037 * 324.63064 * 23 21 19 27 27 C 1.46926 * 118.74331 * 306.39516 * 18 17 16 28 28 H 1.08998 * 109.58911 * 293.82127 * 27 18 17 29 29 C 1.52999 * 109.58874 * 173.39203 * 27 18 17 30 30 C 1.53043 * 109.46041 * 154.93061 * 14 13 11 31 31 H 1.08992 * 109.47203 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47196 * 300.00463 * 1 2 3 33 33 H 1.09001 * 109.46845 * 59.99594 * 1 2 3 34 34 H 1.09000 * 109.46851 * 119.99622 * 2 1 3 35 35 H 1.08998 * 109.47620 * 239.99831 * 2 1 3 36 36 H 1.09002 * 109.46924 * 300.00188 * 3 2 1 37 37 H 1.09003 * 109.46585 * 59.99753 * 3 2 1 38 38 H 1.07998 * 120.78387 * 359.97438 * 6 5 4 39 39 H 1.07992 * 120.27785 * 180.26697 * 7 6 5 40 40 H 1.08004 * 119.46805 * 179.72144 * 8 7 6 41 41 H 0.97004 * 119.99696 * 0.02562 * 13 11 10 42 42 H 1.09005 * 109.50028 * 298.56652 * 16 14 13 43 43 H 1.08994 * 109.49854 * 58.63006 * 16 14 13 44 44 H 1.08998 * 109.59060 * 174.42387 * 17 16 14 45 45 H 1.09004 * 109.58217 * 294.70321 * 17 16 14 46 46 H 0.96996 * 120.00522 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.46819 * 60.00636 * 29 27 18 48 48 H 1.09000 * 109.46790 * 179.97438 * 29 27 18 49 49 H 1.08995 * 109.47468 * 300.00181 * 29 27 18 50 50 H 1.08994 * 109.50079 * 301.34015 * 30 14 13 51 51 H 1.09005 * 109.49225 * 61.43278 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0849 2.6511 0.0012 6 6 3.3371 3.8268 -0.0046 7 6 4.0097 5.0353 0.0019 8 6 5.3973 5.0436 0.0029 9 7 6.0820 3.9224 0.0029 10 6 5.4811 2.7374 0.0014 11 6 6.2932 1.5022 0.0009 12 8 5.7475 0.4160 0.0000 13 7 7.6387 1.5803 0.0014 14 6 8.4435 0.3561 0.0003 15 1 7.9395 -0.4093 -0.5897 16 6 8.6180 -0.1405 1.4373 17 6 9.4306 -1.4392 1.4294 18 7 10.6926 -1.2030 0.7151 19 6 11.8931 -1.5016 1.3023 20 1 12.7302 -0.8279 1.1927 21 6 12.0342 -2.6700 2.0383 22 7 12.8089 -2.6882 3.1022 23 14 11.1246 -4.2167 1.5189 24 1 11.9147 -4.9319 0.4846 25 1 10.9372 -5.1003 2.6976 26 1 9.7987 -3.8474 0.9612 27 6 10.6421 -0.6409 -0.6415 28 1 10.1751 -1.3577 -1.3169 29 6 12.0613 -0.3294 -1.1208 30 6 9.8159 0.6488 -0.6104 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.2576 3.7952 -0.0102 39 1 3.4596 5.9646 0.0019 40 1 5.9230 5.9870 0.0034 41 1 8.0742 2.4470 0.0025 42 1 9.1442 0.6143 2.0218 43 1 7.6392 -0.3259 1.8795 44 1 9.6423 -1.7441 2.4542 45 1 8.8637 -2.2218 0.9251 46 1 12.9072 -3.5045 3.6167 47 1 12.6509 -1.2462 -1.1303 48 1 12.0216 0.0870 -2.1273 49 1 12.5224 0.3922 -0.4465 50 1 9.6898 1.0246 -1.6256 51 1 10.3308 1.3962 -0.0066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947685983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:54 Heat of formation + Delta-G solvation = -21.584702 kcal Electronic energy + Delta-G solvation = -31006.731486 eV Core-core repulsion = 26906.948723 eV Total energy + Delta-G solvation = -4099.782763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.15814 -39.32927 -38.59736 -37.59627 -34.59959 -34.25273 -32.84332 -32.22332 -31.47383 -30.84024 -29.82877 -27.08605 -26.47272 -25.27872 -24.23459 -23.30881 -22.29673 -21.92093 -21.10440 -20.05902 -19.44950 -18.56579 -17.77592 -17.22824 -16.72420 -16.35015 -15.64086 -15.46023 -15.13233 -14.97837 -14.75235 -14.41411 -14.26036 -14.22903 -13.66224 -13.57379 -13.42767 -13.19290 -13.04614 -12.87653 -12.52204 -12.49216 -12.34166 -11.97408 -11.97203 -11.62221 -11.37196 -11.19995 -11.04411 -10.91601 -10.87533 -10.53008 -10.38382 -10.23294 -10.17885 -10.15219 -9.92300 -9.88476 -9.58469 -9.35090 -8.80645 -8.54778 -8.28813 -6.63651 -6.01953 -3.31744 0.41388 0.89559 2.72211 2.79030 3.26317 3.47801 3.57625 3.64779 3.71599 4.04333 4.22035 4.36519 4.47618 4.50295 4.64689 4.65961 4.77564 4.79325 4.98565 4.99129 5.02745 5.18625 5.24615 5.33208 5.34494 5.54249 5.57429 5.58940 5.61020 5.70364 5.77422 5.83759 5.93530 6.03766 6.13611 6.22981 6.31161 6.35631 6.41647 6.53980 6.58648 6.66847 6.87472 6.92433 6.95834 7.00728 7.10972 7.20211 7.43534 7.85306 8.10358 8.46289 8.49297 9.07706 9.79379 10.29120 11.13613 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.002670 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.917664 B =10485.062695 C =11955.881043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.050 3.950 4 O -0.269 6.269 5 C 0.139 3.861 6 C -0.178 4.178 7 C -0.110 4.110 8 C 0.056 3.944 9 N -0.419 5.419 10 C 0.047 3.953 11 C 0.567 3.433 12 O -0.516 6.516 13 N -0.706 5.706 14 C 0.151 3.849 15 H 0.081 0.919 16 C -0.142 4.142 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.273 4.273 20 H 0.076 0.924 21 C 0.050 3.950 22 N -0.881 5.881 23 Si 0.841 3.159 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.259 1.259 27 C 0.168 3.832 28 H 0.028 0.972 29 C -0.133 4.133 30 C -0.133 4.133 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.405 0.595 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.026 0.974 46 H 0.263 0.737 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.313 16.173 -7.955 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.179 6.179 5 C 0.088 3.912 6 C -0.205 4.205 7 C -0.130 4.130 8 C -0.105 4.105 9 N -0.131 5.131 10 C -0.092 4.092 11 C 0.351 3.649 12 O -0.391 6.391 13 N -0.357 5.357 14 C 0.048 3.952 15 H 0.100 0.900 16 C -0.182 4.182 17 C 0.021 3.979 18 N -0.320 5.320 19 C -0.401 4.401 20 H 0.094 0.906 21 C -0.153 4.153 22 N -0.520 5.520 23 Si 0.668 3.332 24 H -0.216 1.216 25 H -0.225 1.225 26 H -0.184 1.184 27 C 0.061 3.939 28 H 0.046 0.954 29 C -0.190 4.190 30 C -0.173 4.173 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.182 0.818 41 H 0.240 0.760 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.057 0.943 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.604 15.033 -7.805 28.247 hybrid contribution -1.452 -0.213 -0.144 1.474 sum -24.056 14.820 -7.950 29.352 Atomic orbital electron populations 1.21692 0.94270 1.02676 1.01939 1.21463 0.95684 0.94436 1.04525 1.23042 0.78643 0.99656 1.01153 1.86431 1.20776 1.24546 1.86114 1.20033 0.92325 0.85716 0.93117 1.21752 1.01030 0.91884 1.05812 1.22193 0.95808 0.98362 0.96621 1.22706 0.91360 0.96422 0.99990 1.67640 1.39920 0.97407 1.08124 1.20865 0.88636 0.93067 1.06626 1.17598 0.82541 0.87081 0.77689 1.90837 1.71692 1.27431 1.49159 1.46088 1.05311 1.10788 1.73490 1.21022 0.90801 0.85664 0.97741 0.90044 1.22429 0.99886 1.00460 0.95422 1.21250 0.86556 0.92932 0.97140 1.44414 1.02471 1.74144 1.10961 1.18576 0.90449 1.02546 1.28510 0.90607 1.25589 0.95906 0.97703 0.96088 1.70080 1.40839 1.27706 1.13405 0.87390 0.81551 0.85799 0.78483 1.21563 1.22453 1.18355 1.20487 0.94211 0.91455 0.87702 0.95430 1.21750 0.96817 1.02200 0.98243 1.22350 0.94616 1.00759 0.99591 0.91573 0.92461 0.92505 0.90375 0.90445 0.91991 0.91957 0.83796 0.84023 0.81781 0.75996 0.91817 0.92607 0.91329 0.95609 0.92785 0.91707 0.94313 0.92464 0.92392 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.05 0.43 4.76 37.16 0.18 0.60 16 4 O -0.27 -3.53 8.20 -40.60 -0.33 -3.86 16 5 C 0.14 1.71 6.71 -38.56 -0.26 1.45 16 6 C -0.18 -1.49 9.13 -39.15 -0.36 -1.85 16 7 C -0.11 -0.76 10.10 -39.36 -0.40 -1.16 16 8 C 0.06 0.48 11.17 -17.55 -0.20 0.28 16 9 N -0.42 -5.04 9.54 -9.71 -0.09 -5.14 16 10 C 0.05 0.66 6.76 -82.88 -0.56 0.10 16 11 C 0.57 9.52 7.77 -12.34 -0.10 9.42 16 12 O -0.52 -10.21 14.80 -16.63 -0.25 -10.45 16 13 N -0.71 -11.12 5.07 -54.72 -0.28 -11.40 16 14 C 0.15 2.68 2.42 -67.89 -0.16 2.51 16 15 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 16 C -0.14 -2.78 5.65 -26.61 -0.15 -2.93 16 17 C 0.15 3.36 4.59 -3.71 -0.02 3.34 16 18 N -0.60 -14.17 2.47 -164.78 -0.41 -14.57 16 19 C -0.27 -7.46 8.42 -15.06 -0.13 -7.59 16 20 H 0.08 2.20 6.84 -52.48 -0.36 1.85 16 21 C 0.05 1.42 4.82 -17.43 -0.08 1.34 16 22 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 23 Si 0.84 21.81 27.40 -169.99 -4.66 17.15 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.26 -6.54 5.24 56.52 0.30 -6.24 16 27 C 0.17 3.37 3.50 -67.60 -0.24 3.13 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 C -0.13 -2.48 8.07 37.16 0.30 -2.18 16 30 C -0.13 -2.26 4.84 -26.61 -0.13 -2.39 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 37 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 38 H 0.14 0.79 6.46 -52.49 -0.34 0.46 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.40 5.66 7.93 -40.82 -0.32 5.34 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.68 7.02 -51.93 -0.36 1.32 16 45 H 0.03 0.60 6.70 -51.93 -0.35 0.26 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.06 1.32 7.68 -51.93 -0.40 0.92 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 1.10 7.42 -51.93 -0.39 0.72 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -33.68 402.81 -9.71 -43.39 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.45 Total: 2.21 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.10 Total: 2.44 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.00 Total: -56.95 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.58 Total: -14.31 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.66 Total: 17.15 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.68 -9.71 -43.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947685983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.808 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds