Wall clock time and date at job start Wed Apr 1 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47441 * 2 1 4 4 O 1.42893 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.35651 * 116.99994 * 180.02562 * 4 3 2 6 6 C 1.39344 * 120.53795 * 359.71852 * 5 4 3 7 7 C 1.38306 * 118.43936 * 179.73601 * 6 5 4 8 8 C 1.38764 * 119.44224 * 0.52362 * 7 6 5 9 9 N 1.31376 * 121.07030 * 359.73998 * 8 7 6 10 10 C 1.32867 * 121.69485 * 0.02562 * 9 8 7 11 11 C 1.47827 * 119.78438 * 179.97438 * 10 9 8 12 12 O 1.21551 * 120.00107 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00123 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00021 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46288 * 34.97205 * 14 13 11 16 16 C 1.53036 * 109.45962 * 275.00004 * 14 13 11 17 17 C 1.53194 * 109.31513 * 178.61775 * 16 14 13 18 18 N 1.46918 * 108.77578 * 54.63129 * 17 16 14 19 19 C 1.36936 * 120.63064 * 126.41701 * 18 17 16 20 20 H 1.08006 * 120.00201 * 221.21851 * 19 18 17 21 21 C 1.38810 * 120.00001 * 41.21722 * 19 18 17 22 22 N 1.31617 * 120.00463 * 214.82979 * 21 19 18 23 23 Si 1.86800 * 119.99997 * 34.83365 * 21 19 18 24 24 H 1.48508 * 109.47208 * 84.62309 * 23 21 19 25 25 H 1.48498 * 109.47534 * 204.62717 * 23 21 19 26 26 H 1.48503 * 109.47037 * 324.63064 * 23 21 19 27 27 C 1.46926 * 118.74331 * 306.39516 * 18 17 16 28 28 H 1.08998 * 109.58911 * 293.82127 * 27 18 17 29 29 C 1.52999 * 109.58874 * 173.39203 * 27 18 17 30 30 C 1.53043 * 109.46041 * 154.93061 * 14 13 11 31 31 H 1.08992 * 109.47203 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47196 * 300.00463 * 1 2 3 33 33 H 1.09001 * 109.46845 * 59.99594 * 1 2 3 34 34 H 1.09000 * 109.46851 * 119.99622 * 2 1 3 35 35 H 1.08998 * 109.47620 * 239.99831 * 2 1 3 36 36 H 1.09002 * 109.46924 * 300.00188 * 3 2 1 37 37 H 1.09003 * 109.46585 * 59.99753 * 3 2 1 38 38 H 1.07998 * 120.78387 * 359.97438 * 6 5 4 39 39 H 1.07992 * 120.27785 * 180.26697 * 7 6 5 40 40 H 1.08004 * 119.46805 * 179.72144 * 8 7 6 41 41 H 0.97004 * 119.99696 * 0.02562 * 13 11 10 42 42 H 1.09005 * 109.50028 * 298.56652 * 16 14 13 43 43 H 1.08994 * 109.49854 * 58.63006 * 16 14 13 44 44 H 1.08998 * 109.59060 * 174.42387 * 17 16 14 45 45 H 1.09004 * 109.58217 * 294.70321 * 17 16 14 46 46 H 0.96996 * 120.00522 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.46819 * 60.00636 * 29 27 18 48 48 H 1.09000 * 109.46790 * 179.97438 * 29 27 18 49 49 H 1.08995 * 109.47468 * 300.00181 * 29 27 18 50 50 H 1.08994 * 109.50079 * 301.34015 * 30 14 13 51 51 H 1.09005 * 109.49225 * 61.43278 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0849 2.6511 0.0012 6 6 3.3371 3.8268 -0.0046 7 6 4.0097 5.0353 0.0019 8 6 5.3973 5.0436 0.0029 9 7 6.0820 3.9224 0.0029 10 6 5.4811 2.7374 0.0014 11 6 6.2932 1.5022 0.0009 12 8 5.7475 0.4160 0.0000 13 7 7.6387 1.5803 0.0014 14 6 8.4435 0.3561 0.0003 15 1 7.9395 -0.4093 -0.5897 16 6 8.6180 -0.1405 1.4373 17 6 9.4306 -1.4392 1.4294 18 7 10.6926 -1.2030 0.7151 19 6 11.8931 -1.5016 1.3023 20 1 12.7302 -0.8279 1.1927 21 6 12.0342 -2.6700 2.0383 22 7 12.8089 -2.6882 3.1022 23 14 11.1246 -4.2167 1.5189 24 1 11.9147 -4.9319 0.4846 25 1 10.9372 -5.1003 2.6976 26 1 9.7987 -3.8474 0.9612 27 6 10.6421 -0.6409 -0.6415 28 1 10.1751 -1.3577 -1.3169 29 6 12.0613 -0.3294 -1.1208 30 6 9.8159 0.6488 -0.6104 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.2576 3.7952 -0.0102 39 1 3.4596 5.9646 0.0019 40 1 5.9230 5.9870 0.0034 41 1 8.0742 2.4470 0.0025 42 1 9.1442 0.6143 2.0218 43 1 7.6392 -0.3259 1.8795 44 1 9.6423 -1.7441 2.4542 45 1 8.8637 -2.2218 0.9251 46 1 12.9072 -3.5045 3.6167 47 1 12.6509 -1.2462 -1.1303 48 1 12.0216 0.0870 -2.1273 49 1 12.5224 0.3922 -0.4465 50 1 9.6898 1.0246 -1.6256 51 1 10.3308 1.3962 -0.0066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947685983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:53 Heat of formation + Delta-G solvation = -43.055025 kcal Electronic energy + Delta-G solvation = -31007.662509 eV Core-core repulsion = 26906.948723 eV Total energy + Delta-G solvation = -4100.713786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.99235 -40.61697 -39.41842 -39.11837 -36.09571 -34.93077 -34.28259 -33.56997 -33.06669 -31.91312 -31.22886 -28.10504 -27.63821 -26.70072 -25.58011 -24.15802 -23.87643 -22.83169 -22.22952 -21.45576 -21.07964 -19.44716 -18.80942 -18.28327 -18.04931 -17.42753 -17.14803 -16.64161 -16.32788 -16.23355 -16.16099 -15.48070 -15.30146 -15.19817 -15.11567 -14.80975 -14.66998 -14.61618 -14.40287 -14.14290 -13.89844 -13.60760 -13.34620 -13.05556 -12.98993 -12.78642 -12.69264 -12.56739 -12.54913 -12.46026 -12.08728 -11.96305 -11.92965 -11.65999 -11.64985 -11.60346 -11.39402 -11.17353 -10.83424 -10.61223 -10.46818 -10.05358 -9.49268 -8.64176 -8.24606 -5.49953 -0.36286 0.22142 1.36365 1.43156 1.52740 1.77336 2.02115 2.11845 2.48529 2.83140 2.94411 3.20251 3.41412 3.57282 3.69074 3.81702 3.88651 3.94124 3.98940 4.03544 4.14724 4.22942 4.23250 4.29737 4.47276 4.49196 4.50718 4.53152 4.62477 4.69177 4.73796 4.75440 4.88362 4.93841 5.00655 5.01263 5.06341 5.09460 5.11016 5.11367 5.13495 5.26227 5.29213 5.45781 5.50102 5.53750 5.61140 5.96028 6.23032 6.29501 6.49257 6.83299 7.02527 7.24896 7.67408 8.19437 8.95144 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.002670 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.917664 B =10485.062695 C =11955.881043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.045 3.955 4 O -0.306 6.306 5 C 0.123 3.877 6 C -0.173 4.173 7 C -0.086 4.086 8 C 0.053 3.947 9 N -0.439 5.439 10 C 0.004 3.996 11 C 0.562 3.438 12 O -0.559 6.559 13 N -0.698 5.698 14 C 0.160 3.840 15 H 0.066 0.934 16 C -0.128 4.128 17 C 0.148 3.852 18 N -0.606 5.606 19 C -0.253 4.253 20 H 0.054 0.946 21 C 0.001 3.999 22 N -0.925 5.925 23 Si 0.894 3.106 24 H -0.289 1.289 25 H -0.302 1.302 26 H -0.252 1.252 27 C 0.158 3.842 28 H 0.031 0.969 29 C -0.125 4.125 30 C -0.119 4.119 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.199 0.801 41 H 0.415 0.585 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.021 0.979 46 H 0.262 0.738 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.046 0.954 50 H 0.090 0.910 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.148 19.637 -9.653 34.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.030 4.030 4 O -0.217 6.217 5 C 0.072 3.928 6 C -0.199 4.199 7 C -0.105 4.105 8 C -0.109 4.109 9 N -0.151 5.151 10 C -0.132 4.132 11 C 0.349 3.651 12 O -0.436 6.436 13 N -0.349 5.349 14 C 0.056 3.944 15 H 0.084 0.916 16 C -0.168 4.168 17 C 0.022 3.978 18 N -0.331 5.331 19 C -0.383 4.383 20 H 0.071 0.929 21 C -0.198 4.198 22 N -0.568 5.568 23 Si 0.721 3.279 24 H -0.217 1.217 25 H -0.229 1.229 26 H -0.176 1.176 27 C 0.053 3.947 28 H 0.049 0.951 29 C -0.183 4.183 30 C -0.158 4.158 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.194 0.806 39 H 0.207 0.793 40 H 0.215 0.785 41 H 0.252 0.748 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.065 0.935 50 H 0.108 0.892 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.458 18.510 -9.538 32.889 hybrid contribution -0.661 -1.091 0.355 1.324 sum -26.120 17.419 -9.182 32.710 Atomic orbital electron populations 1.21655 0.91924 1.03153 1.03121 1.21490 0.97638 0.94484 1.02703 1.23295 0.76791 0.99851 1.03037 1.86388 1.23051 1.25850 1.86403 1.20269 0.92119 0.86782 0.93592 1.22163 1.02489 0.90841 1.04442 1.22743 0.95307 0.99583 0.92893 1.23434 0.92673 0.96389 0.98392 1.67560 1.40874 0.97656 1.08979 1.20417 0.89185 0.92567 1.11027 1.18149 0.82645 0.87939 0.76393 1.90798 1.72411 1.29350 1.51089 1.45882 1.05200 1.10355 1.73477 1.20735 0.91501 0.86337 0.95844 0.91628 1.22228 0.98810 0.98691 0.97109 1.21150 0.86614 0.94400 0.95614 1.44550 1.01497 1.74268 1.12794 1.18509 0.90969 1.01518 1.27271 0.92865 1.26038 0.97377 0.99959 0.96427 1.70153 1.43611 1.28170 1.14831 0.86539 0.80812 0.82842 0.77685 1.21657 1.22923 1.17607 1.20757 0.95830 0.92670 0.85439 0.95110 1.21678 0.95266 1.01032 1.00285 1.22178 0.93197 0.98971 1.01455 0.91530 0.91331 0.91166 0.92404 0.92155 0.89790 0.90051 0.80642 0.79307 0.78475 0.74816 0.92156 0.93067 0.93744 0.96098 0.92910 0.93925 0.90277 0.93504 0.89196 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.13 -2.06 6.30 30.60 0.19 -1.87 16 3 C 0.04 0.70 4.76 71.98 0.34 1.04 16 4 O -0.31 -8.07 8.20 -68.67 -0.56 -8.63 16 5 C 0.12 2.90 6.71 22.93 0.15 3.05 16 6 C -0.17 -2.25 9.13 22.55 0.21 -2.05 16 7 C -0.09 -0.75 10.10 22.41 0.23 -0.52 16 8 C 0.05 0.70 11.17 84.89 0.95 1.65 16 9 N -0.44 -9.76 9.54 -184.63 -1.76 -11.52 16 10 C 0.00 0.12 6.76 41.92 0.28 0.40 16 11 C 0.56 19.27 7.77 86.78 0.67 19.95 16 12 O -0.56 -23.08 14.80 17.11 0.25 -22.83 16 13 N -0.70 -21.87 5.07 -445.30 -2.26 -24.12 16 14 C 0.16 5.65 2.42 45.02 0.11 5.76 16 15 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 16 C -0.13 -5.13 5.65 30.67 0.17 -4.96 16 17 C 0.15 6.91 4.59 86.36 0.40 7.30 16 18 N -0.61 -29.12 2.47 -675.24 -1.67 -30.79 16 19 C -0.25 -14.17 8.42 84.03 0.71 -13.47 16 20 H 0.05 3.20 6.84 -2.91 -0.02 3.18 16 21 C 0.00 0.05 4.82 84.86 0.41 0.46 16 22 N -0.93 -57.74 13.97 21.65 0.30 -57.44 16 23 Si 0.89 46.37 27.40 68.60 1.88 48.25 16 24 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 25 H -0.30 -15.79 7.11 99.48 0.71 -15.09 16 26 H -0.25 -12.60 5.24 99.48 0.52 -12.08 16 27 C 0.16 6.20 3.50 44.97 0.16 6.36 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 C -0.13 -4.52 8.07 71.98 0.58 -3.94 16 30 C -0.12 -3.84 4.84 30.67 0.15 -3.69 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 0.90 7.69 -2.39 -0.02 0.88 16 37 H 0.08 0.92 7.71 -2.39 -0.02 0.90 16 38 H 0.18 1.07 6.46 -2.91 -0.02 1.05 16 39 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 40 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.41 11.25 7.93 -92.71 -0.73 10.51 16 42 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.04 2.25 7.02 -2.39 -0.02 2.24 16 45 H 0.02 1.00 6.70 -2.38 -0.02 0.99 16 46 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.04 1.71 7.68 -2.38 -0.02 1.69 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.05 1.77 7.42 -2.39 -0.02 1.75 16 50 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 51 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -78.34 402.81 2.62 -75.72 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.01 Total: 16.53 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.42 Total: 14.83 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.38 Total: -123.87 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.31 Total: -31.46 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.25 kcal Total: -78.34 2.62 -75.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947685983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.664 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds