Wall clock time and date at job start Wed Apr 1 2020 04:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46912 * 2 1 4 4 O 1.42905 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.35422 * 117.00327 * 179.97438 * 4 3 2 6 6 N 1.32241 * 119.79993 * 0.29273 * 5 4 3 7 7 C 1.31885 * 121.80029 * 180.33873 * 6 5 4 8 8 C 1.50697 * 119.40728 * 179.67695 * 7 6 5 9 9 C 1.38353 * 121.18431 * 359.64855 * 7 6 5 10 10 C 1.38339 * 119.45772 * 0.02979 * 9 7 6 11 11 C 1.39985 * 118.35140 * 359.97438 * 10 9 7 12 12 C 1.47526 * 120.60029 * 180.02562 * 11 10 9 13 13 O 1.21584 * 120.00449 * 185.09226 * 12 11 10 14 14 N 1.34776 * 119.99701 * 5.09283 * 12 11 10 15 15 C 1.47422 * 125.65002 * 174.66732 * 14 12 11 16 16 C 1.54910 * 104.93278 * 155.83762 * 15 14 12 17 17 C 1.55448 * 101.45066 * 37.00330 * 16 15 14 18 18 H 1.09002 * 110.85623 * 82.96212 * 17 16 15 19 19 N 1.46500 * 110.70792 * 206.14833 * 17 16 15 20 20 C 1.46499 * 119.99823 * 54.99811 * 19 17 16 21 21 C 1.36939 * 119.99559 * 235.00156 * 19 17 16 22 22 H 1.07996 * 120.00024 * 320.82347 * 21 19 17 23 23 C 1.38818 * 119.99586 * 140.82365 * 21 19 17 24 24 N 1.31615 * 119.99875 * 160.02602 * 23 21 19 25 25 Si 1.86802 * 120.00134 * 340.02245 * 23 21 19 26 26 H 1.48499 * 109.47002 * 95.29528 * 25 23 21 27 27 H 1.48496 * 109.47240 * 215.29629 * 25 23 21 28 28 H 1.48498 * 109.47223 * 335.29890 * 25 23 21 29 29 C 1.47029 * 125.65174 * 354.69117 * 14 12 11 30 30 H 1.08998 * 109.47303 * 59.99671 * 1 2 3 31 31 H 1.08996 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47266 * 299.99870 * 1 2 3 33 33 H 1.09000 * 109.46906 * 240.00401 * 2 1 3 34 34 H 1.08994 * 109.47335 * 119.99822 * 2 1 3 35 35 H 1.09000 * 109.47448 * 59.99828 * 3 2 1 36 36 H 1.09008 * 109.47379 * 299.99731 * 3 2 1 37 37 H 1.08995 * 109.47283 * 269.97501 * 8 7 6 38 38 H 1.08997 * 109.47264 * 29.97839 * 8 7 6 39 39 H 1.08998 * 109.47046 * 149.97524 * 8 7 6 40 40 H 1.07996 * 120.27319 * 180.02562 * 9 7 6 41 41 H 1.08003 * 120.82266 * 180.02562 * 10 9 7 42 42 H 1.09008 * 110.36724 * 274.73329 * 15 14 12 43 43 H 1.08999 * 110.36795 * 36.93967 * 15 14 12 44 44 H 1.08999 * 111.00472 * 155.14072 * 16 15 14 45 45 H 1.09003 * 111.00308 * 278.99103 * 16 15 14 46 46 H 1.09003 * 109.46793 * 88.09220 * 20 19 17 47 47 H 1.09006 * 109.47026 * 208.08463 * 20 19 17 48 48 H 1.08988 * 109.47513 * 328.08796 * 20 19 17 49 49 H 0.96995 * 120.00433 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.87932 * 300.45604 * 29 14 12 51 51 H 1.08994 * 109.88225 * 61.61655 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0838 2.6492 -0.0012 6 7 3.3597 3.7557 0.0046 7 6 3.9170 4.9510 -0.0024 8 6 3.0399 6.1764 -0.0026 9 6 5.2925 5.1001 -0.0089 10 6 6.0987 3.9759 -0.0088 11 6 5.4849 2.7178 -0.0014 12 6 6.2969 1.4861 -0.0003 13 8 5.7556 0.4009 -0.0873 14 7 7.6389 1.5638 0.0971 15 6 8.5591 0.4188 0.2214 16 6 9.9163 0.9372 -0.3162 17 6 9.9140 2.4028 0.2019 18 1 10.2544 2.4492 1.2363 19 7 10.7428 3.2559 -0.6534 20 6 10.4868 3.3177 -2.0945 21 6 11.7568 3.9955 -0.1056 22 1 11.6189 4.4750 0.8522 23 6 12.9619 4.1289 -0.7817 24 7 13.7767 5.1190 -0.4850 25 14 13.4271 2.9032 -2.1123 26 1 13.0367 3.4419 -3.4399 27 1 14.8939 2.6737 -2.0830 28 1 12.7204 1.6195 -1.8718 29 6 8.4277 2.8046 0.0976 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9564 -0.8901 37 1 2.8238 6.4684 -1.0302 38 1 2.1071 5.9556 0.5162 39 1 3.5544 6.9916 0.5063 40 1 5.7332 6.0860 -0.0142 41 1 7.1749 4.0667 -0.0134 42 1 8.6539 0.1198 1.2654 43 1 8.2069 -0.4181 -0.3816 44 1 10.7462 0.3720 0.1079 45 1 9.9419 0.9078 -1.4056 46 1 9.7473 4.0919 -2.2993 47 1 11.4134 3.5527 -2.6184 48 1 10.1094 2.3547 -2.4381 49 1 14.6189 5.2121 -0.9571 50 1 8.2561 3.3532 -0.8285 51 1 8.1493 3.4205 0.9527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972640631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:58 Heat of formation + Delta-G solvation = 12.979247 kcal Electronic energy + Delta-G solvation = -31353.178194 eV Core-core repulsion = 27254.894236 eV Total energy + Delta-G solvation = -4098.283958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11392 -39.56754 -38.31358 -37.48020 -34.97034 -34.21442 -33.45101 -31.80754 -31.72673 -30.26610 -28.48117 -28.26955 -26.57338 -26.29306 -24.30212 -23.39513 -22.77068 -22.20031 -21.45055 -19.95653 -19.53182 -18.20747 -17.24180 -17.10655 -16.66254 -16.59557 -16.06031 -15.46632 -15.15229 -14.88659 -14.75636 -14.55206 -14.18108 -13.91037 -13.88544 -13.29000 -13.19517 -13.13976 -13.05573 -12.73978 -12.56489 -12.46027 -12.41550 -12.34831 -12.28774 -12.12831 -11.81088 -11.51786 -11.33900 -11.25945 -10.99089 -10.85250 -10.73403 -10.58756 -10.27460 -10.04857 -10.03901 -9.94030 -9.68175 -9.50434 -8.64387 -8.62466 -8.34085 -6.96935 -6.10550 -3.58153 0.60386 1.17611 2.83538 2.93601 3.11665 3.24029 3.40321 3.44515 3.74914 3.92810 4.41560 4.52287 4.56782 4.66078 4.70934 4.79805 4.88688 4.96769 5.00524 5.09417 5.15715 5.19554 5.22406 5.26810 5.31206 5.32298 5.39622 5.41194 5.46427 5.57814 5.67560 5.70364 5.70424 5.80300 5.81553 5.85434 5.95896 5.97975 6.03694 6.06504 6.25863 6.27761 6.32543 6.46836 6.53587 6.59228 6.72233 7.17600 7.60482 7.71828 7.92721 8.25201 8.34861 8.82369 9.56533 9.95374 11.04058 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002751 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.955285 B =10175.551521 C =11508.583217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.066 3.934 4 O -0.270 6.270 5 C 0.377 3.623 6 N -0.550 5.550 7 C 0.187 3.813 8 C -0.107 4.107 9 C -0.219 4.219 10 C -0.039 4.039 11 C -0.211 4.211 12 C 0.579 3.421 13 O -0.527 6.527 14 N -0.611 5.611 15 C 0.111 3.889 16 C -0.157 4.157 17 C 0.170 3.830 18 H 0.092 0.908 19 N -0.597 5.597 20 C 0.105 3.895 21 C -0.277 4.277 22 H 0.082 0.918 23 C 0.038 3.962 24 N -0.897 5.897 25 Si 0.885 3.115 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.267 1.267 29 C 0.067 3.933 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.144 0.856 41 H 0.183 0.817 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.017 0.983 47 H 0.048 0.952 48 H 0.034 0.966 49 H 0.265 0.735 50 H 0.079 0.921 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.190 -3.022 1.144 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.010 4.010 4 O -0.175 6.175 5 C 0.196 3.804 6 N -0.276 5.276 7 C 0.050 3.950 8 C -0.164 4.164 9 C -0.239 4.239 10 C -0.063 4.063 11 C -0.217 4.217 12 C 0.368 3.632 13 O -0.405 6.405 14 N -0.345 5.345 15 C -0.012 4.012 16 C -0.197 4.197 17 C 0.061 3.939 18 H 0.110 0.890 19 N -0.319 5.319 20 C -0.039 4.039 21 C -0.405 4.405 22 H 0.099 0.901 23 C -0.163 4.163 24 N -0.538 5.538 25 Si 0.716 3.284 26 H -0.215 1.215 27 H -0.230 1.230 28 H -0.192 1.192 29 C -0.057 4.057 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.162 0.838 41 H 0.199 0.801 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.185 -3.881 1.068 23.532 hybrid contribution 1.137 -0.271 -0.868 1.456 sum -22.048 -4.153 0.200 22.437 Atomic orbital electron populations 1.21669 0.94359 1.02292 1.02096 1.21497 0.95763 0.95043 1.03902 1.22747 0.77926 0.98073 1.02206 1.86506 1.21983 1.23227 1.85767 1.19720 0.87958 0.84771 0.87943 1.67266 1.40223 0.98198 1.21886 1.21191 0.92320 0.91876 0.89633 1.20807 0.99265 0.92902 1.03473 1.21842 0.93661 1.00319 1.08118 1.23321 1.04003 0.90312 0.88712 1.19916 0.91209 0.95101 1.15510 1.17427 0.80388 0.88251 0.77136 1.90795 1.70879 1.28771 1.50045 1.48310 1.04709 1.09091 1.72388 1.22207 0.88938 0.89142 1.00895 1.23455 0.95307 0.99068 1.01863 1.21598 0.87692 0.88171 0.96447 0.88966 1.44028 1.36009 1.49492 1.02332 1.21365 0.99215 0.97840 0.85484 1.18769 0.90409 1.24259 1.07097 0.90058 1.25517 0.95657 0.96760 0.98368 1.69832 1.11875 1.28895 1.43173 0.86818 0.76574 0.83610 0.81425 1.21493 1.22986 1.19170 1.23223 0.94577 0.86609 1.01299 0.92456 0.91848 0.92455 0.90806 0.90842 0.91759 0.91769 0.89879 0.90367 0.90035 0.83834 0.80058 0.91492 0.90821 0.89910 0.90751 0.96437 0.93406 0.94793 0.92522 0.90302 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -1.21 6.30 -26.73 -0.17 -1.38 16 3 C 0.07 0.77 5.31 37.16 0.20 0.97 16 4 O -0.27 -4.22 8.23 -39.67 -0.33 -4.55 16 5 C 0.38 5.80 7.51 -16.61 -0.12 5.68 16 6 N -0.55 -7.43 9.11 -9.21 -0.08 -7.51 16 7 C 0.19 2.12 6.78 -82.53 -0.56 1.56 16 8 C -0.11 -0.80 10.16 36.00 0.37 -0.43 16 9 C -0.22 -2.46 9.71 -39.50 -0.38 -2.85 16 10 C -0.04 -0.51 8.70 -38.89 -0.34 -0.85 16 11 C -0.21 -3.28 5.90 -104.69 -0.62 -3.90 16 12 C 0.58 9.98 7.81 -12.47 -0.10 9.89 16 13 O -0.53 -10.47 15.44 -16.42 -0.25 -10.72 16 14 N -0.61 -9.62 3.33 -173.27 -0.58 -10.19 16 15 C 0.11 1.63 6.92 -2.53 -0.02 1.62 16 16 C -0.16 -2.49 6.64 -24.42 -0.16 -2.65 16 17 C 0.17 2.97 3.45 -65.94 -0.23 2.74 16 18 H 0.09 1.62 7.95 -51.93 -0.41 1.21 16 19 N -0.60 -12.75 2.47 -171.21 -0.42 -13.17 16 20 C 0.11 2.12 8.38 59.85 0.50 2.62 16 21 C -0.28 -7.12 9.87 -15.06 -0.15 -7.27 16 22 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 23 C 0.04 1.04 5.32 -17.43 -0.09 0.95 16 24 N -0.90 -26.07 13.97 55.49 0.78 -25.30 16 25 Si 0.89 21.22 24.95 -169.99 -4.24 16.98 16 26 H -0.29 -6.75 6.70 56.52 0.38 -6.37 16 27 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.07 1.02 4.50 -3.06 -0.01 1.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.06 0.72 8.11 -51.92 -0.42 0.29 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.18 2.32 2.88 -54.47 -0.16 2.16 16 42 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.07 1.10 7.99 -51.93 -0.41 0.69 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.24 6.09 -51.93 -0.32 0.93 16 46 H 0.02 0.33 7.81 -51.93 -0.41 -0.08 16 47 H 0.05 1.06 3.39 -51.93 -0.18 0.88 16 48 H 0.03 0.61 6.07 -51.94 -0.32 0.30 16 49 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.08 1.21 5.58 -51.93 -0.29 0.92 16 51 H 0.07 1.03 6.65 -51.93 -0.35 0.68 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -32.01 397.98 -8.55 -40.57 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.90 Total: 0.87 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.52 Total: 7.03 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.31 Total: -56.17 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.58 Total: -15.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.24 Total: 16.98 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.01 -8.55 -40.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972640631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.548 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds