Wall clock time and date at job start Wed Apr 1 2020 04:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46912 * 2 1 4 4 O 1.42905 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.35422 * 117.00327 * 179.97438 * 4 3 2 6 6 N 1.32241 * 119.79993 * 0.29273 * 5 4 3 7 7 C 1.31885 * 121.80029 * 180.33873 * 6 5 4 8 8 C 1.50697 * 119.40728 * 179.67695 * 7 6 5 9 9 C 1.38353 * 121.18431 * 359.64855 * 7 6 5 10 10 C 1.38339 * 119.45772 * 0.02979 * 9 7 6 11 11 C 1.39985 * 118.35140 * 359.97438 * 10 9 7 12 12 C 1.47526 * 120.60029 * 180.02562 * 11 10 9 13 13 O 1.21584 * 120.00449 * 185.09226 * 12 11 10 14 14 N 1.34776 * 119.99701 * 5.09283 * 12 11 10 15 15 C 1.47422 * 125.65002 * 174.66732 * 14 12 11 16 16 C 1.54910 * 104.93278 * 155.83762 * 15 14 12 17 17 C 1.55448 * 101.45066 * 37.00330 * 16 15 14 18 18 H 1.09002 * 110.85623 * 82.96212 * 17 16 15 19 19 N 1.46500 * 110.70792 * 206.14833 * 17 16 15 20 20 C 1.46499 * 119.99823 * 54.99811 * 19 17 16 21 21 C 1.36939 * 119.99559 * 235.00156 * 19 17 16 22 22 H 1.07996 * 120.00024 * 320.82347 * 21 19 17 23 23 C 1.38818 * 119.99586 * 140.82365 * 21 19 17 24 24 N 1.31615 * 119.99875 * 160.02602 * 23 21 19 25 25 Si 1.86802 * 120.00134 * 340.02245 * 23 21 19 26 26 H 1.48499 * 109.47002 * 95.29528 * 25 23 21 27 27 H 1.48496 * 109.47240 * 215.29629 * 25 23 21 28 28 H 1.48498 * 109.47223 * 335.29890 * 25 23 21 29 29 C 1.47029 * 125.65174 * 354.69117 * 14 12 11 30 30 H 1.08998 * 109.47303 * 59.99671 * 1 2 3 31 31 H 1.08996 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47266 * 299.99870 * 1 2 3 33 33 H 1.09000 * 109.46906 * 240.00401 * 2 1 3 34 34 H 1.08994 * 109.47335 * 119.99822 * 2 1 3 35 35 H 1.09000 * 109.47448 * 59.99828 * 3 2 1 36 36 H 1.09008 * 109.47379 * 299.99731 * 3 2 1 37 37 H 1.08995 * 109.47283 * 269.97501 * 8 7 6 38 38 H 1.08997 * 109.47264 * 29.97839 * 8 7 6 39 39 H 1.08998 * 109.47046 * 149.97524 * 8 7 6 40 40 H 1.07996 * 120.27319 * 180.02562 * 9 7 6 41 41 H 1.08003 * 120.82266 * 180.02562 * 10 9 7 42 42 H 1.09008 * 110.36724 * 274.73329 * 15 14 12 43 43 H 1.08999 * 110.36795 * 36.93967 * 15 14 12 44 44 H 1.08999 * 111.00472 * 155.14072 * 16 15 14 45 45 H 1.09003 * 111.00308 * 278.99103 * 16 15 14 46 46 H 1.09003 * 109.46793 * 88.09220 * 20 19 17 47 47 H 1.09006 * 109.47026 * 208.08463 * 20 19 17 48 48 H 1.08988 * 109.47513 * 328.08796 * 20 19 17 49 49 H 0.96995 * 120.00433 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.87932 * 300.45604 * 29 14 12 51 51 H 1.08994 * 109.88225 * 61.61655 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0838 2.6492 -0.0012 6 7 3.3597 3.7557 0.0046 7 6 3.9170 4.9510 -0.0024 8 6 3.0399 6.1764 -0.0026 9 6 5.2925 5.1001 -0.0089 10 6 6.0987 3.9759 -0.0088 11 6 5.4849 2.7178 -0.0014 12 6 6.2969 1.4861 -0.0003 13 8 5.7556 0.4009 -0.0873 14 7 7.6389 1.5638 0.0971 15 6 8.5591 0.4188 0.2214 16 6 9.9163 0.9372 -0.3162 17 6 9.9140 2.4028 0.2019 18 1 10.2544 2.4492 1.2363 19 7 10.7428 3.2559 -0.6534 20 6 10.4868 3.3177 -2.0945 21 6 11.7568 3.9955 -0.1056 22 1 11.6189 4.4750 0.8522 23 6 12.9619 4.1289 -0.7817 24 7 13.7767 5.1190 -0.4850 25 14 13.4271 2.9032 -2.1123 26 1 13.0367 3.4419 -3.4399 27 1 14.8939 2.6737 -2.0830 28 1 12.7204 1.6195 -1.8718 29 6 8.4277 2.8046 0.0976 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9564 -0.8901 37 1 2.8238 6.4684 -1.0302 38 1 2.1071 5.9556 0.5162 39 1 3.5544 6.9916 0.5063 40 1 5.7332 6.0860 -0.0142 41 1 7.1749 4.0667 -0.0134 42 1 8.6539 0.1198 1.2654 43 1 8.2069 -0.4181 -0.3816 44 1 10.7462 0.3720 0.1079 45 1 9.9419 0.9078 -1.4056 46 1 9.7473 4.0919 -2.2993 47 1 11.4134 3.5527 -2.6184 48 1 10.1094 2.3547 -2.4381 49 1 14.6189 5.2121 -0.9571 50 1 8.2561 3.3532 -0.8285 51 1 8.1493 3.4205 0.9527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972640631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:57 Heat of formation + Delta-G solvation = -6.720331 kcal Electronic energy + Delta-G solvation = -31354.032432 eV Core-core repulsion = 27254.894236 eV Total energy + Delta-G solvation = -4099.138195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.18500 -40.79809 -39.31140 -38.89894 -36.58611 -35.01082 -34.51439 -33.66848 -32.61946 -31.60525 -29.81913 -29.13506 -28.04638 -27.41055 -25.68313 -24.57077 -23.95211 -23.32900 -22.30927 -21.20453 -20.94715 -19.22113 -18.95529 -18.40337 -17.93871 -17.59255 -17.45476 -16.81016 -16.54279 -16.03174 -15.72162 -15.49148 -15.42955 -15.19412 -14.91822 -14.68129 -14.60543 -14.37548 -14.15979 -14.11818 -13.93688 -13.59883 -13.29456 -13.27521 -13.18481 -13.07151 -12.99704 -12.86325 -12.49481 -12.40071 -12.28926 -12.16649 -12.03698 -12.00591 -11.60015 -11.58863 -11.49108 -11.22067 -10.97113 -10.70953 -10.57288 -9.80453 -9.43972 -8.76477 -8.17452 -5.60694 -0.41958 0.18165 1.34128 1.46001 1.55758 1.75192 1.80463 1.95558 2.44001 2.68773 2.98543 3.09283 3.23592 3.54017 3.60055 3.78199 3.82233 3.86710 3.90355 3.96253 4.12596 4.22069 4.24894 4.29484 4.33194 4.36317 4.51662 4.52238 4.54153 4.59100 4.68996 4.73724 4.76669 4.79082 4.80190 4.91871 4.93940 4.98864 5.01089 5.07341 5.12180 5.12768 5.15837 5.23176 5.29165 5.34767 5.46254 5.94803 6.18299 6.21874 6.39510 6.69093 6.96180 7.06926 7.60328 8.03188 9.00990 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002751 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.955285 B =10175.551521 C =11508.583217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.065 3.935 4 O -0.296 6.296 5 C 0.360 3.640 6 N -0.557 5.557 7 C 0.186 3.814 8 C -0.105 4.105 9 C -0.214 4.214 10 C -0.039 4.039 11 C -0.238 4.238 12 C 0.576 3.424 13 O -0.563 6.563 14 N -0.609 5.609 15 C 0.114 3.886 16 C -0.147 4.147 17 C 0.165 3.835 18 H 0.089 0.911 19 N -0.606 5.606 20 C 0.103 3.897 21 C -0.256 4.256 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.946 5.946 25 Si 0.943 3.057 26 H -0.280 1.280 27 H -0.314 1.314 28 H -0.253 1.253 29 C 0.080 3.920 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.175 0.825 41 H 0.185 0.815 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.033 0.967 47 H 0.029 0.971 48 H 0.056 0.944 49 H 0.262 0.738 50 H 0.082 0.918 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.144 -2.654 0.688 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.010 4.010 4 O -0.201 6.201 5 C 0.180 3.820 6 N -0.283 5.283 7 C 0.049 3.951 8 C -0.161 4.161 9 C -0.234 4.234 10 C -0.064 4.064 11 C -0.245 4.245 12 C 0.367 3.633 13 O -0.443 6.443 14 N -0.343 5.343 15 C -0.008 4.008 16 C -0.187 4.187 17 C 0.057 3.943 18 H 0.107 0.893 19 N -0.328 5.328 20 C -0.041 4.041 21 C -0.386 4.386 22 H 0.071 0.929 23 C -0.214 4.214 24 N -0.590 5.590 25 Si 0.772 3.228 26 H -0.208 1.208 27 H -0.244 1.244 28 H -0.176 1.176 29 C -0.044 4.044 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.192 0.808 41 H 0.201 0.799 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.100 0.900 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.174 -3.535 0.611 25.429 hybrid contribution 1.614 -0.294 -0.660 1.769 sum -23.560 -3.829 -0.049 23.869 Atomic orbital electron populations 1.21645 0.92032 1.03292 1.02794 1.21520 0.97650 0.93746 1.02997 1.22933 0.76421 0.99252 1.02428 1.86478 1.23785 1.23989 1.85881 1.19916 0.88219 0.85277 0.88573 1.67368 1.40191 0.98481 1.22219 1.21946 0.93245 0.92328 0.87577 1.20948 0.98892 0.91562 1.04742 1.22212 0.93563 1.01018 1.06581 1.23343 1.04226 0.90096 0.88699 1.19910 0.91363 0.95192 1.17990 1.17737 0.80652 0.88488 0.76461 1.90764 1.71494 1.30142 1.51902 1.48322 1.04541 1.09483 1.71929 1.22229 0.88009 0.88871 1.01704 1.23340 0.96142 0.97731 1.01486 1.21682 0.88244 0.88690 0.95709 0.89259 1.44042 1.35507 1.50067 1.03232 1.21414 0.98731 0.99615 0.84359 1.18676 0.91101 1.23145 1.05653 0.92886 1.26094 0.95998 0.98209 1.01122 1.69952 1.12613 1.30970 1.45480 0.85881 0.75408 0.82062 0.79417 1.20764 1.24363 1.17633 1.23081 0.92700 0.86471 1.02170 0.91782 0.90709 0.91704 0.91780 0.91672 0.91372 0.91507 0.88393 0.90093 0.87635 0.80758 0.79876 0.90101 0.90914 0.89188 0.91216 0.94893 0.95292 0.92584 0.92851 0.90030 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.12 -2.36 6.30 30.59 0.19 -2.17 16 3 C 0.06 1.50 5.31 71.98 0.38 1.88 16 4 O -0.30 -9.43 8.23 -66.41 -0.55 -9.97 16 5 C 0.36 11.02 7.51 85.13 0.64 11.66 16 6 N -0.56 -14.34 9.11 -296.06 -2.70 -17.04 16 7 C 0.19 3.75 6.78 42.58 0.29 4.04 16 8 C -0.10 -1.19 10.16 71.23 0.72 -0.46 16 9 C -0.21 -4.20 9.71 22.32 0.22 -3.98 16 10 C -0.04 -0.97 8.70 22.72 0.20 -0.77 16 11 C -0.24 -7.28 5.90 -19.91 -0.12 -7.39 16 12 C 0.58 19.73 7.81 86.69 0.68 20.41 16 13 O -0.56 -22.65 15.44 16.78 0.26 -22.39 16 14 N -0.61 -18.45 3.33 -820.38 -2.73 -21.18 16 15 C 0.11 3.19 6.92 86.86 0.60 3.79 16 16 C -0.15 -4.36 6.64 32.09 0.21 -4.14 16 17 C 0.16 5.46 3.45 46.28 0.16 5.62 16 18 H 0.09 3.02 7.95 -2.39 -0.02 3.00 16 19 N -0.61 -24.96 2.47 -695.59 -1.72 -26.68 16 20 C 0.10 3.90 8.38 127.77 1.07 4.97 16 21 C -0.26 -13.12 9.87 84.03 0.83 -12.29 16 22 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 23 C -0.02 -0.94 5.32 84.86 0.45 -0.49 16 24 N -0.95 -56.08 13.97 21.65 0.30 -55.78 16 25 Si 0.94 43.67 24.95 68.60 1.71 45.38 16 26 H -0.28 -12.54 6.70 99.48 0.67 -11.87 16 27 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 28 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 29 C 0.08 2.27 4.50 86.73 0.39 2.66 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.07 1.47 8.11 -2.38 -0.02 1.45 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.73 8.07 -2.39 -0.02 0.71 16 40 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.18 4.30 2.88 -4.78 -0.01 4.29 16 42 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.07 2.09 7.99 -2.39 -0.02 2.07 16 44 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.07 2.15 6.09 -2.39 -0.01 2.14 16 46 H 0.03 1.15 7.81 -2.39 -0.02 1.13 16 47 H 0.03 1.22 3.39 -2.38 -0.01 1.21 16 48 H 0.06 1.87 6.07 -2.39 -0.01 1.86 16 49 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.08 2.32 5.58 -2.39 -0.01 2.31 16 51 H 0.09 2.30 6.65 -2.39 -0.02 2.28 16 Total: -1.00 -70.51 397.98 3.10 -67.41 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.89 Total: 17.99 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 7.63 Total: 22.25 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.84 Total: -120.67 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.29 Total: -32.37 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.71 Total: 45.38 kcal Total: -70.51 3.10 -67.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972640631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.687 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds