Wall clock time and date at job start Wed Apr 1 2020 04:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47277 * 2 1 4 4 O 1.42901 * 109.47283 * 239.99584 * 2 1 3 5 5 C 1.35486 * 117.00332 * 270.00135 * 4 2 1 6 6 C 1.39174 * 119.53071 * 179.72678 * 5 4 2 7 7 C 1.37955 * 119.26261 * 179.75031 * 6 5 4 8 8 C 1.40277 * 118.36048 * 0.51221 * 7 6 5 9 9 C 1.47614 * 120.50068 * 179.77382 * 8 7 6 10 10 O 1.21579 * 119.99893 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00271 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00262 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.64221 * 31.85203 * 12 11 9 14 14 C 1.54331 * 110.72132 * 268.52166 * 12 11 9 15 15 N 1.47023 * 107.26967 * 263.82936 * 14 12 11 16 16 C 1.36936 * 125.65159 * 181.02380 * 15 14 12 17 17 H 1.07999 * 120.00336 * 173.94014 * 16 15 14 18 18 C 1.38817 * 119.99272 * 353.93856 * 16 15 14 19 19 N 1.31621 * 120.00419 * 6.83308 * 18 16 15 20 20 Si 1.86806 * 119.99469 * 186.83017 * 18 16 15 21 21 H 1.48496 * 109.47168 * 94.98907 * 20 18 16 22 22 H 1.48502 * 109.46630 * 214.98712 * 20 18 16 23 23 H 1.48498 * 109.47347 * 334.98331 * 20 18 16 24 24 C 1.47426 * 108.70365 * 1.05535 * 15 14 12 25 25 C 1.54910 * 104.83361 * 335.87275 * 24 15 14 26 26 C 1.52997 * 111.00669 * 278.93387 * 25 24 15 27 27 C 1.53006 * 111.00471 * 155.08238 * 25 24 15 28 28 C 1.39525 * 119.00063 * 359.75008 * 8 7 6 29 29 N 1.31658 * 120.63253 * 359.97438 * 28 8 7 30 30 H 1.09001 * 109.46510 * 60.00170 * 1 2 3 31 31 H 1.08994 * 109.46888 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46852 * 300.00576 * 1 2 3 33 33 H 1.09001 * 109.47036 * 119.99837 * 2 1 3 34 34 H 1.08994 * 109.47345 * 59.99902 * 3 2 1 35 35 H 1.09004 * 109.47019 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46955 * 299.99887 * 3 2 1 37 37 H 1.07996 * 120.36382 * 359.97438 * 6 5 4 38 38 H 1.08003 * 120.81563 * 180.26536 * 7 6 5 39 39 H 0.97001 * 120.00192 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.88251 * 23.24137 * 14 12 11 41 41 H 1.08994 * 109.88455 * 144.41121 * 14 12 11 42 42 H 0.96998 * 119.99674 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.36891 * 217.03616 * 24 15 14 44 44 H 1.09005 * 110.36583 * 94.71277 * 24 15 14 45 45 H 1.09001 * 109.47231 * 172.19382 * 26 25 24 46 46 H 1.08995 * 109.47090 * 292.19704 * 26 25 24 47 47 H 1.08999 * 109.47027 * 52.19391 * 26 25 24 48 48 H 1.09001 * 109.46982 * 307.80289 * 27 25 24 49 49 H 1.08994 * 109.47119 * 67.80388 * 27 25 24 50 50 H 1.08997 * 109.46890 * 187.80891 * 27 25 24 51 51 H 1.08004 * 119.68195 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2114 -2.0091 -1.0653 6 6 2.6694 -2.7188 -2.1715 7 6 2.8813 -4.0774 -2.0606 8 6 2.6137 -4.6953 -0.8300 9 6 2.8190 -6.1472 -0.6603 10 8 3.2224 -6.8170 -1.5913 11 7 2.5592 -6.7304 0.5267 12 6 2.7624 -8.1714 0.6949 13 1 3.5855 -8.5189 0.0705 14 6 1.4662 -8.9464 0.3771 15 7 0.7816 -9.1943 1.6544 16 6 -0.3978 -9.8728 1.8093 17 1 -0.7713 -10.0873 2.7996 18 6 -1.1131 -10.2848 0.6932 19 7 -0.5959 -10.1441 -0.5089 20 14 -2.8098 -11.0390 0.8976 21 1 -3.8431 -9.9854 0.7320 22 1 -3.0094 -12.0938 -0.1285 23 1 -2.9257 -11.6375 2.2517 24 6 1.5746 -8.5907 2.7407 25 6 3.0189 -8.5194 2.1850 26 6 3.7254 -9.8699 2.3191 27 6 3.8187 -7.4135 2.8767 28 6 2.1511 -3.9167 0.2314 29 7 1.9680 -2.6214 0.0833 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 2.8604 -2.2107 -3.1052 38 1 3.2404 -4.6519 -2.9017 39 1 2.2377 -6.1960 1.2696 40 1 0.8285 -8.3503 -0.2756 41 1 1.7092 -9.8941 -0.1033 42 1 -1.0956 -10.4323 -1.2886 43 1 1.5410 -9.2203 3.6299 44 1 1.2061 -7.5906 2.9689 45 1 4.6827 -9.8323 1.7992 46 1 3.8929 -10.0892 3.3735 47 1 3.1039 -10.6502 1.8800 48 1 3.2623 -6.4775 2.8271 49 1 3.9843 -7.6830 3.9197 50 1 4.7791 -7.2922 2.3758 51 1 1.9420 -4.3810 1.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974660123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:20 Heat of formation + Delta-G solvation = -14.571863 kcal Electronic energy + Delta-G solvation = -31234.024033 eV Core-core repulsion = 27134.545370 eV Total energy + Delta-G solvation = -4099.478663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.00850 -39.77518 -38.51689 -37.54212 -33.97161 -33.59187 -33.07306 -32.63113 -30.75762 -30.51780 -28.00259 -27.57279 -26.81252 -25.63943 -24.50878 -24.17753 -23.18132 -21.42752 -20.72461 -20.00488 -18.97486 -18.69322 -17.46784 -17.06539 -16.67646 -15.97814 -15.59385 -15.08768 -14.89221 -14.69699 -14.52003 -14.39339 -13.95886 -13.86055 -13.71863 -13.48971 -13.25249 -13.15096 -12.79912 -12.64252 -12.61902 -12.51942 -12.21661 -12.03773 -11.98628 -11.69120 -11.39573 -11.22922 -11.09236 -11.04179 -10.97349 -10.78336 -10.41406 -10.27050 -10.10506 -10.04795 -10.00202 -9.88251 -9.64337 -9.48241 -8.75317 -8.61088 -8.41847 -6.81829 -5.70101 -3.03809 0.66356 1.04795 2.72928 3.01842 3.40690 3.44682 3.46276 3.48356 3.83594 3.97557 4.50477 4.54582 4.65549 4.67557 4.75896 4.87422 4.91252 4.94905 5.05404 5.23540 5.26227 5.30283 5.38432 5.42594 5.46625 5.51214 5.51712 5.63300 5.68527 5.80122 5.80863 5.91439 5.91865 5.98699 6.01510 6.15825 6.19563 6.19892 6.23999 6.38470 6.56900 6.60628 6.66881 6.70806 6.93878 7.00414 7.53394 7.56342 7.66243 7.80927 7.89630 8.26039 8.53865 9.22099 9.83141 10.48818 11.40945 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.002784 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.917314 B =10055.504659 C =10969.705911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.300 6.300 5 C 0.340 3.660 6 C -0.199 4.199 7 C 0.016 3.984 8 C -0.216 4.216 9 C 0.565 3.435 10 O -0.538 6.538 11 N -0.703 5.703 12 C 0.124 3.876 13 H 0.091 0.909 14 C 0.174 3.826 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.143 3.857 25 C -0.090 4.090 26 C -0.126 4.126 27 C -0.130 4.130 28 C 0.178 3.822 29 N -0.543 5.543 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.394 0.606 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.041 0.959 44 H 0.015 0.985 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 19.175 2.768 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.207 6.207 5 C 0.161 3.839 6 C -0.220 4.220 7 C -0.009 4.009 8 C -0.222 4.222 9 C 0.351 3.649 10 O -0.416 6.416 11 N -0.354 5.354 12 C 0.019 3.981 13 H 0.109 0.891 14 C 0.049 3.951 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.563 5.563 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.017 3.983 25 C -0.092 4.092 26 C -0.183 4.183 27 C -0.188 4.188 28 C 0.020 3.980 29 N -0.266 5.266 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.229 0.771 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.067 19.266 2.440 21.433 hybrid contribution -1.067 -0.619 -0.091 1.237 sum 8.000 18.648 2.349 20.427 Atomic orbital electron populations 1.22224 0.94676 1.03192 1.02615 1.22400 0.94578 0.92754 0.87933 1.21911 1.01952 0.93864 1.03026 1.86262 1.79556 1.15947 1.38900 1.20022 0.89551 0.84608 0.89717 1.21034 1.07716 0.94062 0.99168 1.21544 0.89869 0.92802 0.96717 1.20927 1.09323 0.95477 0.96481 1.17781 0.77938 0.86093 0.83099 1.90779 1.46493 1.64561 1.39734 1.45899 1.66712 1.10080 1.12693 1.22519 1.00879 0.78957 0.95700 0.89066 1.21543 0.88101 0.97247 0.88259 1.44434 1.23604 1.63728 1.01107 1.19015 0.95395 1.28717 0.92767 0.90471 1.24829 0.98638 1.01431 0.95330 1.69973 1.36828 1.52303 0.97160 0.86156 0.84550 0.78367 0.77029 1.21719 1.21809 1.20675 1.21637 0.88327 0.95917 0.92433 1.22030 0.96690 0.95808 0.94637 1.21595 0.99391 0.96260 1.01092 1.21674 0.99459 0.97628 1.00067 1.22613 0.89890 0.87495 0.97959 1.67239 1.22488 1.12361 1.24544 0.92001 0.91754 0.90988 0.89032 0.90421 0.91829 0.91641 0.83557 0.82761 0.77075 0.93034 0.93105 0.93695 0.94088 0.96709 0.93304 0.92875 0.91191 0.93190 0.92602 0.92809 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.53 37.16 0.35 -1.10 16 2 C 0.08 0.72 3.10 -26.73 -0.08 0.64 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.64 16 4 O -0.30 -3.36 9.75 -18.15 -0.18 -3.54 16 5 C 0.34 4.14 7.46 -16.95 -0.13 4.01 16 6 C -0.20 -2.25 10.02 -39.34 -0.39 -2.64 16 7 C 0.02 0.21 9.70 -38.92 -0.38 -0.17 16 8 C -0.22 -3.03 5.89 -104.83 -0.62 -3.65 16 9 C 0.56 9.63 7.77 -12.44 -0.10 9.54 16 10 O -0.54 -11.04 16.06 5.30 0.09 -10.95 16 11 N -0.70 -11.43 4.41 -53.04 -0.23 -11.67 16 12 C 0.12 2.31 2.59 -66.09 -0.17 2.14 16 13 H 0.09 1.76 7.45 -51.93 -0.39 1.38 16 14 C 0.17 4.20 4.80 -3.06 -0.01 4.18 16 15 N -0.60 -14.75 3.38 -170.07 -0.57 -15.32 16 16 C -0.23 -6.30 10.26 -15.06 -0.15 -6.46 16 17 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -27.15 10.36 55.49 0.58 -26.57 16 20 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.14 2.76 6.12 -2.53 -0.02 2.74 16 25 C -0.09 -1.45 0.83 -152.36 -0.13 -1.57 16 26 C -0.13 -1.95 8.57 37.16 0.32 -1.63 16 27 C -0.13 -1.62 8.22 37.16 0.31 -1.32 16 28 C 0.18 2.22 10.71 -17.15 -0.18 2.04 16 29 N -0.54 -6.80 8.61 -12.96 -0.11 -6.92 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.89 6.97 -51.93 -0.36 0.53 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.15 1.85 7.73 -52.48 -0.41 1.44 16 39 H 0.39 5.49 5.17 -40.82 -0.21 5.28 16 40 H 0.05 1.44 7.27 -51.93 -0.38 1.06 16 41 H 0.05 1.39 7.55 -51.93 -0.39 1.00 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 44 H 0.02 0.28 7.98 -51.93 -0.41 -0.13 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 48 H 0.05 0.57 6.48 -51.93 -0.34 0.23 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.16 1.68 6.41 -52.48 -0.34 1.34 16 LS Contribution 408.67 15.07 6.16 6.16 Total: -1.00 -32.69 408.67 -8.68 -41.37 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.25 Total: 4.46 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.12 Total: 5.85 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.35 Total: -60.48 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.09 Total: -14.49 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.69 -8.68 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974660123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.795 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds