Wall clock time and date at job start Wed Apr 1 2020 04:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47277 * 2 1 4 4 O 1.42901 * 109.47283 * 239.99584 * 2 1 3 5 5 C 1.35486 * 117.00332 * 270.00135 * 4 2 1 6 6 C 1.39174 * 119.53071 * 179.72678 * 5 4 2 7 7 C 1.37955 * 119.26261 * 179.75031 * 6 5 4 8 8 C 1.40277 * 118.36048 * 0.51221 * 7 6 5 9 9 C 1.47614 * 120.50068 * 179.77382 * 8 7 6 10 10 O 1.21579 * 119.99893 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00271 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00262 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.64221 * 31.85203 * 12 11 9 14 14 C 1.54331 * 110.72132 * 268.52166 * 12 11 9 15 15 N 1.47023 * 107.26967 * 263.82936 * 14 12 11 16 16 C 1.36936 * 125.65159 * 181.02380 * 15 14 12 17 17 H 1.07999 * 120.00336 * 173.94014 * 16 15 14 18 18 C 1.38817 * 119.99272 * 353.93856 * 16 15 14 19 19 N 1.31621 * 120.00419 * 6.83308 * 18 16 15 20 20 Si 1.86806 * 119.99469 * 186.83017 * 18 16 15 21 21 H 1.48496 * 109.47168 * 94.98907 * 20 18 16 22 22 H 1.48502 * 109.46630 * 214.98712 * 20 18 16 23 23 H 1.48498 * 109.47347 * 334.98331 * 20 18 16 24 24 C 1.47426 * 108.70365 * 1.05535 * 15 14 12 25 25 C 1.54910 * 104.83361 * 335.87275 * 24 15 14 26 26 C 1.52997 * 111.00669 * 278.93387 * 25 24 15 27 27 C 1.53006 * 111.00471 * 155.08238 * 25 24 15 28 28 C 1.39525 * 119.00063 * 359.75008 * 8 7 6 29 29 N 1.31658 * 120.63253 * 359.97438 * 28 8 7 30 30 H 1.09001 * 109.46510 * 60.00170 * 1 2 3 31 31 H 1.08994 * 109.46888 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46852 * 300.00576 * 1 2 3 33 33 H 1.09001 * 109.47036 * 119.99837 * 2 1 3 34 34 H 1.08994 * 109.47345 * 59.99902 * 3 2 1 35 35 H 1.09004 * 109.47019 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46955 * 299.99887 * 3 2 1 37 37 H 1.07996 * 120.36382 * 359.97438 * 6 5 4 38 38 H 1.08003 * 120.81563 * 180.26536 * 7 6 5 39 39 H 0.97001 * 120.00192 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.88251 * 23.24137 * 14 12 11 41 41 H 1.08994 * 109.88455 * 144.41121 * 14 12 11 42 42 H 0.96998 * 119.99674 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.36891 * 217.03616 * 24 15 14 44 44 H 1.09005 * 110.36583 * 94.71277 * 24 15 14 45 45 H 1.09001 * 109.47231 * 172.19382 * 26 25 24 46 46 H 1.08995 * 109.47090 * 292.19704 * 26 25 24 47 47 H 1.08999 * 109.47027 * 52.19391 * 26 25 24 48 48 H 1.09001 * 109.46982 * 307.80289 * 27 25 24 49 49 H 1.08994 * 109.47119 * 67.80388 * 27 25 24 50 50 H 1.08997 * 109.46890 * 187.80891 * 27 25 24 51 51 H 1.08004 * 119.68195 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2114 -2.0091 -1.0653 6 6 2.6694 -2.7188 -2.1715 7 6 2.8813 -4.0774 -2.0606 8 6 2.6137 -4.6953 -0.8300 9 6 2.8190 -6.1472 -0.6603 10 8 3.2224 -6.8170 -1.5913 11 7 2.5592 -6.7304 0.5267 12 6 2.7624 -8.1714 0.6949 13 1 3.5855 -8.5189 0.0705 14 6 1.4662 -8.9464 0.3771 15 7 0.7816 -9.1943 1.6544 16 6 -0.3978 -9.8728 1.8093 17 1 -0.7713 -10.0873 2.7996 18 6 -1.1131 -10.2848 0.6932 19 7 -0.5959 -10.1441 -0.5089 20 14 -2.8098 -11.0390 0.8976 21 1 -3.8431 -9.9854 0.7320 22 1 -3.0094 -12.0938 -0.1285 23 1 -2.9257 -11.6375 2.2517 24 6 1.5746 -8.5907 2.7407 25 6 3.0189 -8.5194 2.1850 26 6 3.7254 -9.8699 2.3191 27 6 3.8187 -7.4135 2.8767 28 6 2.1511 -3.9167 0.2314 29 7 1.9680 -2.6214 0.0833 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 2.8604 -2.2107 -3.1052 38 1 3.2404 -4.6519 -2.9017 39 1 2.2377 -6.1960 1.2696 40 1 0.8285 -8.3503 -0.2756 41 1 1.7092 -9.8941 -0.1033 42 1 -1.0956 -10.4323 -1.2886 43 1 1.5410 -9.2203 3.6299 44 1 1.2061 -7.5906 2.9689 45 1 4.6827 -9.8323 1.7992 46 1 3.8929 -10.0892 3.3735 47 1 3.1039 -10.6502 1.8800 48 1 3.2623 -6.4775 2.8271 49 1 3.9843 -7.6830 3.9197 50 1 4.7791 -7.2922 2.3758 51 1 1.9420 -4.3810 1.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974660123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:19 Heat of formation + Delta-G solvation = -36.245081 kcal Electronic energy + Delta-G solvation = -31234.963855 eV Core-core repulsion = 27134.545370 eV Total energy + Delta-G solvation = -4100.418485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.02915 -41.09768 -39.70920 -38.79481 -35.72039 -34.70063 -34.20701 -33.63624 -32.59848 -31.64534 -29.60418 -28.17894 -28.03316 -27.39932 -25.78309 -25.13248 -24.65970 -22.49626 -22.02236 -21.58188 -20.30405 -19.63651 -18.72619 -18.69027 -18.06703 -17.05250 -16.83836 -16.63805 -16.14740 -15.87226 -15.71557 -15.55768 -15.42834 -15.31916 -14.79303 -14.75688 -14.41408 -14.10517 -13.91291 -13.78530 -13.77098 -13.46670 -13.28555 -13.18022 -13.15580 -12.94877 -12.87772 -12.80259 -12.67635 -12.56570 -12.10145 -11.93563 -11.85376 -11.77423 -11.73133 -11.53037 -11.31213 -11.24835 -11.08285 -10.73881 -10.62561 -10.07130 -9.61390 -8.86517 -7.83914 -5.18903 -0.37947 0.09034 1.44256 1.45879 1.54907 1.79237 1.89277 2.13591 2.49537 2.74073 3.05847 3.34628 3.50735 3.62925 3.72989 3.77877 3.89114 3.93420 3.98702 4.01690 4.05007 4.09318 4.27882 4.41491 4.52362 4.53822 4.60902 4.70212 4.72998 4.82485 4.86193 4.87443 4.90433 4.92421 4.97909 5.02802 5.07007 5.15692 5.19282 5.20485 5.26870 5.29096 5.31865 5.37255 5.48568 5.58070 5.71497 5.77193 6.12892 6.19034 6.51897 6.60613 7.09141 7.20453 7.79324 8.43877 9.25804 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.002784 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.917314 B =10055.504659 C =10969.705911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 C -0.145 4.145 4 O -0.303 6.303 5 C 0.337 3.663 6 C -0.194 4.194 7 C 0.013 3.987 8 C -0.234 4.234 9 C 0.564 3.436 10 O -0.581 6.581 11 N -0.693 5.693 12 C 0.137 3.863 13 H 0.082 0.918 14 C 0.191 3.809 15 N -0.620 5.620 16 C -0.234 4.234 17 H 0.087 0.913 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.974 3.026 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.263 1.263 24 C 0.137 3.863 25 C -0.074 4.074 26 C -0.124 4.124 27 C -0.124 4.124 28 C 0.185 3.815 29 N -0.547 5.547 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.407 0.593 40 H 0.004 0.996 41 H 0.003 0.997 42 H 0.243 0.757 43 H 0.049 0.951 44 H 0.033 0.967 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.030 0.970 48 H 0.063 0.937 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 21.705 5.219 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 C -0.202 4.202 4 O -0.210 6.210 5 C 0.158 3.842 6 C -0.214 4.214 7 C -0.013 4.013 8 C -0.240 4.240 9 C 0.353 3.647 10 O -0.462 6.462 11 N -0.344 5.344 12 C 0.032 3.968 13 H 0.100 0.900 14 C 0.065 3.935 15 N -0.346 5.346 16 C -0.363 4.363 17 H 0.105 0.895 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.803 3.197 21 H -0.217 1.217 22 H -0.227 1.227 23 H -0.188 1.188 24 C 0.012 3.988 25 C -0.076 4.076 26 C -0.181 4.181 27 C -0.182 4.182 28 C 0.027 3.973 29 N -0.271 5.271 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.189 0.811 38 H 0.173 0.827 39 H 0.246 0.754 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.730 21.845 4.963 24.423 hybrid contribution -1.279 -1.327 -0.831 2.022 sum 8.451 20.517 4.131 22.571 Atomic orbital electron populations 1.22212 0.94350 1.02073 1.03766 1.22659 0.94911 0.93868 0.86942 1.21918 1.01977 0.92148 1.04175 1.86274 1.79332 1.15355 1.40057 1.20283 0.88921 0.85171 0.89812 1.21240 1.06762 0.93379 1.00005 1.21645 0.89768 0.93499 0.96373 1.20721 1.11733 0.93610 0.97930 1.18253 0.76768 0.87286 0.82432 1.90753 1.48519 1.65866 1.41032 1.45706 1.66539 1.09012 1.13190 1.22123 0.97259 0.79699 0.97763 0.89999 1.21114 0.89813 0.94997 0.87592 1.44677 1.23544 1.63653 1.02704 1.19456 0.96138 1.27735 0.92990 0.89541 1.25667 1.02315 1.03007 0.95176 1.70236 1.37947 1.54150 0.97709 0.85117 0.80055 0.77184 0.77368 1.21748 1.22699 1.18769 1.21918 0.89406 0.96262 0.91198 1.21998 0.95616 0.97744 0.92235 1.21593 0.99284 0.94636 1.02636 1.21657 0.99268 0.96344 1.00911 1.22836 0.88848 0.87406 0.98161 1.67311 1.22757 1.12144 1.24880 0.91676 0.93922 0.89067 0.89643 0.88433 0.91788 0.91328 0.81104 0.82685 0.75447 0.97761 0.97905 0.94798 0.93310 0.94912 0.91599 0.90303 0.95089 0.91809 0.90273 0.91728 0.80209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.53 71.98 0.69 -1.89 16 2 C 0.07 1.17 3.10 30.60 0.09 1.26 16 3 C -0.15 -1.56 9.56 71.98 0.69 -0.87 16 4 O -0.30 -6.27 9.75 -87.86 -0.86 -7.12 16 5 C 0.34 7.71 7.46 84.83 0.63 8.34 16 6 C -0.19 -4.11 10.02 22.43 0.22 -3.89 16 7 C 0.01 0.32 9.70 22.70 0.22 0.54 16 8 C -0.23 -6.50 5.89 -20.00 -0.12 -6.61 16 9 C 0.56 19.61 7.77 86.72 0.67 20.28 16 10 O -0.58 -24.92 16.06 -3.97 -0.06 -24.99 16 11 N -0.69 -22.41 4.41 -439.99 -1.94 -24.35 16 12 C 0.14 5.20 2.59 46.18 0.12 5.32 16 13 H 0.08 3.28 7.45 -2.39 -0.02 3.27 16 14 C 0.19 9.77 4.80 86.73 0.42 10.18 16 15 N -0.62 -30.99 3.38 -691.97 -2.34 -33.33 16 16 C -0.23 -12.99 10.26 84.03 0.86 -12.13 16 17 H 0.09 4.53 7.84 -2.91 -0.02 4.51 16 18 C -0.07 -3.99 5.48 84.86 0.47 -3.52 16 19 N -0.95 -59.64 10.36 21.65 0.22 -59.41 16 20 Si 0.97 46.68 29.56 68.60 2.03 48.71 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.14 5.07 6.12 86.86 0.53 5.60 16 25 C -0.07 -2.27 0.83 -50.79 -0.04 -2.31 16 26 C -0.12 -3.68 8.57 71.98 0.62 -3.06 16 27 C -0.12 -2.60 8.22 71.98 0.59 -2.01 16 28 C 0.19 4.37 10.71 85.03 0.91 5.28 16 29 N -0.55 -12.89 8.61 -307.82 -2.65 -15.54 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.51 6.97 -2.39 -0.02 1.49 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.16 3.78 7.73 -2.91 -0.02 3.76 16 39 H 0.41 10.71 5.17 -92.71 -0.48 10.23 16 40 H 0.00 0.25 7.27 -2.39 -0.02 0.23 16 41 H 0.00 0.17 7.55 -2.39 -0.02 0.15 16 42 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 44 H 0.03 1.13 7.98 -2.38 -0.02 1.11 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 47 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 48 H 0.06 1.17 6.48 -2.39 -0.02 1.16 16 49 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.18 3.36 6.41 -2.91 -0.02 3.34 16 Total: -1.00 -75.98 408.67 2.43 -73.56 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.45 Total: 21.96 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 7.58 Total: 20.51 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -6.70 Total: -132.63 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.92 Total: -32.11 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.98 2.43 -73.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974660123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.311 kcal (2) G-P(sol) polarization free energy of solvation -75.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds