Wall clock time and date at job start Wed Apr 1 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 O 1.42903 * 109.47167 * 120.00314 * 2 1 3 5 5 C 1.35921 * 117.00201 * 85.19358 * 4 2 1 6 6 C 1.38845 * 120.40558 * 174.76929 * 5 4 2 7 7 N 1.31878 * 121.00214 * 179.97438 * 6 5 4 8 8 C 1.31681 * 121.94014 * 0.02562 * 7 6 5 9 9 C 1.39533 * 120.69162 * 359.97438 * 8 7 6 10 10 C 1.47849 * 120.53006 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99650 * 180.02562 * 10 9 8 12 12 N 1.34771 * 120.00378 * 359.72264 * 10 9 8 13 13 C 1.46494 * 120.00351 * 180.27650 * 12 10 9 14 14 H 1.09008 * 110.63996 * 325.70148 * 13 12 10 15 15 C 1.54330 * 110.72210 * 88.84037 * 13 12 10 16 16 N 1.47018 * 107.26603 * 96.17096 * 15 13 12 17 17 C 1.36940 * 125.64543 * 178.90750 * 16 15 13 18 18 H 1.08004 * 120.00154 * 174.87979 * 17 16 15 19 19 C 1.38811 * 119.99889 * 354.87886 * 17 16 15 20 20 N 1.31620 * 120.00166 * 7.07236 * 19 17 16 21 21 Si 1.86803 * 120.00055 * 187.07801 * 19 17 16 22 22 H 1.48493 * 109.47644 * 94.97981 * 21 19 17 23 23 H 1.48506 * 109.46960 * 214.98521 * 21 19 17 24 24 H 1.48502 * 109.47004 * 334.97962 * 21 19 17 25 25 C 1.47420 * 108.70971 * 358.94440 * 16 15 13 26 26 C 1.55156 * 110.72259 * 202.56021 * 13 12 10 27 27 C 1.52994 * 111.00532 * 35.21409 * 26 13 12 28 28 C 1.53006 * 111.00341 * 159.06612 * 26 13 12 29 29 C 1.38845 * 120.40470 * 355.04355 * 5 4 2 30 30 H 1.08996 * 109.47166 * 59.99945 * 1 2 3 31 31 H 1.08996 * 109.46871 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46818 * 299.99916 * 1 2 3 33 33 H 1.09004 * 109.47229 * 240.00303 * 2 1 3 34 34 H 1.09001 * 109.47576 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47507 * 300.00410 * 3 2 1 36 36 H 1.08999 * 109.47119 * 60.00268 * 3 2 1 37 37 H 1.08005 * 119.49910 * 359.97244 * 6 5 4 38 38 H 1.08003 * 119.65412 * 179.97438 * 8 7 6 39 39 H 0.97001 * 119.99707 * 0.27837 * 12 10 9 40 40 H 1.08992 * 109.88523 * 215.59167 * 15 13 12 41 41 H 1.08999 * 109.87925 * 336.76099 * 15 13 12 42 42 H 0.97004 * 120.00198 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.37023 * 142.96702 * 25 16 15 44 44 H 1.08995 * 110.36879 * 265.18118 * 25 16 15 45 45 H 1.08999 * 109.47573 * 59.99586 * 27 26 13 46 46 H 1.09000 * 109.47076 * 180.02562 * 27 26 13 47 47 H 1.09005 * 109.46801 * 299.99770 * 27 26 13 48 48 H 1.08994 * 109.47473 * 59.99706 * 28 26 13 49 49 H 1.09003 * 109.46534 * 180.02562 * 28 26 13 50 50 H 1.09004 * 109.46953 * 299.99607 * 28 26 13 51 51 H 1.08000 * 120.88148 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1164 -2.0266 1.0965 6 6 2.6728 -2.7420 2.1483 7 7 2.7848 -4.0549 2.0928 8 6 2.3791 -4.7451 1.0473 9 6 1.8085 -4.1029 -0.0522 10 6 1.3537 -4.8814 -1.2239 11 8 0.8584 -4.3120 -2.1768 12 7 1.4937 -6.2218 -1.2381 13 6 1.0485 -6.9926 -2.4016 14 1 0.1621 -6.5399 -2.8462 15 6 2.1811 -7.1123 -3.4432 16 7 2.8483 -8.4025 -3.2159 17 6 3.8951 -8.8991 -3.9458 18 1 4.3713 -9.8217 -3.6483 19 6 4.3442 -8.2167 -5.0680 20 7 3.8599 -7.0263 -5.3520 21 14 5.6359 -8.9880 -6.1754 22 1 4.9682 -9.6859 -7.3034 23 1 6.5283 -7.9273 -6.7082 24 1 6.4381 -9.9639 -5.3949 25 6 2.2032 -9.0735 -2.0727 26 6 0.7734 -8.4684 -2.0099 27 6 0.1947 -8.5620 -0.5967 28 6 -0.1525 -9.1418 -3.0250 29 6 1.6790 -2.7096 -0.0305 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 3.0192 -2.2153 3.0253 38 1 2.4891 -5.8195 1.0409 39 1 1.8893 -6.6761 -0.4778 40 1 1.7638 -7.0830 -4.4496 41 1 2.8937 -6.2982 -3.3111 42 1 4.1741 -6.5492 -6.1360 43 1 2.1525 -10.1489 -2.2432 44 1 2.7470 -8.8615 -1.1522 45 1 -0.7426 -8.0076 -0.5504 46 1 0.0118 -9.6072 -0.3475 47 1 0.9033 -8.1379 0.1148 48 1 0.3132 -9.1227 -4.0102 49 1 -0.3292 -10.1750 -2.7260 50 1 -1.1018 -8.6071 -3.0614 51 1 1.2463 -2.1801 -0.8664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974916447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:57 Heat of formation + Delta-G solvation = -13.680378 kcal Electronic energy + Delta-G solvation = -31464.550308 eV Core-core repulsion = 27365.110303 eV Total energy + Delta-G solvation = -4099.440006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07757 -39.77225 -38.66252 -37.74822 -33.99808 -33.64387 -33.12235 -32.37979 -30.74047 -30.38812 -28.10414 -27.64384 -26.87722 -25.65212 -24.83288 -24.05672 -23.19798 -21.39702 -20.85482 -20.00547 -19.17100 -18.33818 -17.13778 -17.00040 -16.71640 -16.55985 -15.80629 -15.61950 -14.92331 -14.65645 -14.55729 -14.18554 -14.04785 -13.91088 -13.79440 -13.58418 -13.26505 -13.16696 -12.83808 -12.64025 -12.56301 -12.49232 -12.17290 -12.08674 -11.99631 -11.69234 -11.39873 -11.33475 -11.09912 -11.09320 -11.02339 -10.79397 -10.45713 -10.31598 -10.19341 -10.03071 -9.89395 -9.87711 -9.66902 -9.47089 -8.69729 -8.61671 -8.49567 -6.83590 -5.71195 -3.04750 0.54012 1.03897 2.77598 2.97579 3.33182 3.40345 3.45474 3.47768 3.78553 4.21166 4.38297 4.47982 4.49760 4.54453 4.66678 4.79272 4.81768 4.84098 4.90852 5.20831 5.22619 5.25329 5.27199 5.37033 5.42133 5.44076 5.52767 5.60587 5.68562 5.76873 5.78438 5.82486 5.87355 5.89900 5.99529 6.12206 6.14280 6.17343 6.21661 6.35858 6.54868 6.58481 6.64707 6.66946 6.91698 6.97231 7.54661 7.59013 7.68175 7.76723 7.85607 8.24414 8.44281 9.20850 9.81954 10.47394 11.39874 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.002896 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.633249 B = 9667.050610 C =10656.984968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.303 6.303 5 C 0.076 3.924 6 C 0.090 3.910 7 N -0.448 5.448 8 C 0.093 3.907 9 C -0.134 4.134 10 C 0.558 3.442 11 O -0.533 6.533 12 N -0.699 5.699 13 C 0.123 3.877 14 H 0.090 0.910 15 C 0.175 3.825 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.143 3.857 26 C -0.089 4.089 27 C -0.131 4.131 28 C -0.126 4.126 29 C -0.112 4.112 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.395 0.605 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.016 0.984 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.070 0.930 49 H 0.053 0.947 50 H 0.048 0.952 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 10.390 14.378 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.216 6.216 5 C 0.028 3.972 6 C -0.069 4.069 7 N -0.156 5.156 8 C -0.066 4.066 9 C -0.139 4.139 10 C 0.344 3.656 11 O -0.410 6.410 12 N -0.350 5.350 13 C 0.019 3.981 14 H 0.108 0.892 15 C 0.049 3.951 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.563 5.563 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.017 3.983 26 C -0.091 4.091 27 C -0.189 4.189 28 C -0.183 4.183 29 C -0.139 4.139 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.232 0.768 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.172 10.549 14.332 19.583 hybrid contribution 0.545 -0.168 -1.256 1.380 sum -7.627 10.381 13.076 18.355 Atomic orbital electron populations 1.22382 0.94683 1.03375 1.03344 1.22569 0.94672 0.93933 0.87294 1.21846 1.02247 0.93133 1.03185 1.86137 1.81123 1.15213 1.39098 1.20043 0.97587 0.84151 0.95442 1.22373 0.97629 0.89319 0.97569 1.67723 1.15280 1.06924 1.25675 1.22866 0.94876 1.00424 0.88390 1.20984 1.02055 0.94274 0.96578 1.17905 0.79240 0.82428 0.86074 1.90778 1.44564 1.69991 1.35716 1.45935 1.62071 1.05985 1.21013 1.22557 0.99408 0.89746 0.86392 0.89212 1.21536 0.90747 0.88506 0.94295 1.44427 1.37059 1.17617 1.33757 1.19019 1.06968 1.05451 1.04407 0.90433 1.24825 1.00110 0.96753 0.98548 1.69974 1.46048 1.12145 1.28172 0.86148 0.80767 0.78124 0.81019 1.21633 1.21846 1.20683 1.21727 0.89323 0.96104 0.91194 1.22101 0.97054 0.94726 0.95218 1.21681 1.00254 1.01470 0.95529 1.21595 0.97769 0.99174 0.99797 1.21883 0.99873 0.93908 0.98275 0.90603 0.91755 0.91339 0.90426 0.91498 0.90267 0.91397 0.81634 0.82200 0.76833 0.92544 0.93555 0.93712 0.93941 0.96689 0.92778 0.92471 0.93143 0.91134 0.92798 0.93333 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.20 37.16 0.34 -1.12 16 2 C 0.07 0.64 2.85 -26.73 -0.08 0.56 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 4 O -0.30 -3.25 9.81 -19.49 -0.19 -3.44 16 5 C 0.08 0.90 6.62 -39.13 -0.26 0.64 16 6 C 0.09 1.03 11.13 -17.31 -0.19 0.84 16 7 N -0.45 -5.76 10.34 -12.79 -0.13 -5.89 16 8 C 0.09 1.20 10.71 -17.13 -0.18 1.02 16 9 C -0.13 -1.93 5.89 -104.84 -0.62 -2.55 16 10 C 0.56 9.62 7.78 -12.33 -0.10 9.52 16 11 O -0.53 -10.95 16.10 5.32 0.09 -10.86 16 12 N -0.70 -11.41 4.46 -52.97 -0.24 -11.65 16 13 C 0.12 2.29 2.54 -66.10 -0.17 2.12 16 14 H 0.09 1.72 7.53 -51.92 -0.39 1.33 16 15 C 0.17 4.21 4.81 -3.06 -0.01 4.20 16 16 N -0.60 -14.75 3.38 -169.77 -0.57 -15.33 16 17 C -0.23 -6.29 10.27 -15.06 -0.15 -6.45 16 18 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -27.10 10.36 55.49 0.57 -26.52 16 21 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.14 2.75 6.16 -2.27 -0.01 2.74 16 26 C -0.09 -1.43 0.84 -152.10 -0.13 -1.56 16 27 C -0.13 -1.63 8.23 37.15 0.31 -1.33 16 28 C -0.13 -1.95 8.58 37.16 0.32 -1.63 16 29 C -0.11 -1.50 7.89 -38.72 -0.31 -1.81 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.60 7.00 -51.93 -0.36 0.24 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.75 6.30 -51.93 -0.33 0.42 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.16 1.75 6.42 -52.48 -0.34 1.42 16 39 H 0.40 5.54 5.07 -40.82 -0.21 5.34 16 40 H 0.06 1.54 7.30 -51.93 -0.38 1.16 16 41 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 44 H 0.02 0.29 8.00 -51.93 -0.42 -0.13 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.57 6.44 -51.93 -0.33 0.24 16 48 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.15 2.02 5.29 -52.49 -0.28 1.74 16 LS Contribution 404.18 15.07 6.09 6.09 Total: -1.00 -32.66 404.18 -8.42 -41.07 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.03 Total: 5.14 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.98 Total: 4.30 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.37 Total: -59.39 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.11 Total: -14.31 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.66 -8.42 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974916447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.394 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds