Wall clock time and date at job start Wed Apr 1 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 O 1.42902 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.35646 * 117.00292 * 179.97438 * 4 3 2 6 6 C 1.39345 * 120.53790 * 0.27913 * 5 4 3 7 7 C 1.38306 * 118.43781 * 180.26196 * 6 5 4 8 8 C 1.38760 * 119.44351 * 359.72809 * 7 6 5 9 9 N 1.31373 * 121.06851 * 0.02562 * 8 7 6 10 10 C 1.32852 * 121.69810 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78636 * 180.02562 * 10 9 8 12 12 O 1.21554 * 119.99857 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99715 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00063 * 179.97438 * 13 11 10 15 15 H 1.09005 * 110.63957 * 328.14482 * 14 13 11 16 16 C 1.54327 * 110.71866 * 91.47566 * 14 13 11 17 17 N 1.47024 * 107.26774 * 96.17335 * 16 14 13 18 18 C 1.36941 * 125.64618 * 179.20447 * 17 16 14 19 19 H 1.08005 * 119.99780 * 179.68989 * 18 17 16 20 20 C 1.38813 * 119.99913 * 359.69358 * 18 17 16 21 21 N 1.31616 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47563 * 59.99703 * 22 20 18 24 24 H 1.48504 * 109.46777 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47166 * 299.99426 * 22 20 18 26 26 C 1.47426 * 108.70449 * 358.94057 * 17 16 14 27 27 C 1.54912 * 104.83261 * 24.12870 * 26 17 16 28 28 C 1.53004 * 111.00325 * 81.06512 * 27 26 17 29 29 C 1.52998 * 111.00343 * 204.88065 * 27 26 17 30 30 H 1.08996 * 109.47054 * 299.99569 * 1 2 3 31 31 H 1.09001 * 109.47143 * 60.00378 * 1 2 3 32 32 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47244 * 239.99929 * 2 1 3 34 34 H 1.09009 * 109.47225 * 119.99925 * 2 1 3 35 35 H 1.08996 * 109.46907 * 60.00342 * 3 2 1 36 36 H 1.08996 * 109.47338 * 299.99906 * 3 2 1 37 37 H 1.07997 * 120.78102 * 359.96219 * 6 5 4 38 38 H 1.08007 * 120.27470 * 179.70240 * 7 6 5 39 39 H 1.08010 * 119.46469 * 180.02562 * 8 7 6 40 40 H 0.97005 * 120.00259 * 0.02562 * 13 11 10 41 41 H 1.08995 * 109.88184 * 336.75758 * 16 14 13 42 42 H 1.09002 * 109.88385 * 215.58765 * 16 14 13 43 43 H 0.97001 * 119.99407 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.36518 * 142.96440 * 26 17 16 45 45 H 1.08997 * 110.36787 * 265.28818 * 26 17 16 46 46 H 1.08994 * 109.46864 * 61.44984 * 28 27 26 47 47 H 1.09000 * 109.46578 * 181.45533 * 28 27 26 48 48 H 1.08996 * 109.46833 * 301.45173 * 28 27 26 49 49 H 1.08992 * 109.47271 * 58.54108 * 29 27 26 50 50 H 1.09003 * 109.47056 * 178.54990 * 29 27 26 51 51 H 1.09006 * 109.46578 * 298.54351 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0848 2.6512 0.0001 6 6 3.3369 3.8269 0.0050 7 6 4.0095 5.0354 -0.0013 8 6 5.3971 5.0437 -0.0063 9 7 6.0818 3.9225 -0.0058 10 6 5.4809 2.7376 0.0001 11 6 6.2931 1.5023 0.0010 12 8 5.7473 0.4162 0.0059 13 7 7.6385 1.5805 -0.0036 14 6 8.4434 0.3565 -0.0021 15 1 7.9323 -0.4388 0.5406 16 6 8.7698 -0.0841 -1.4446 17 7 10.1047 0.4395 -1.7694 18 6 10.7681 0.2549 -2.9531 19 1 11.7477 0.6866 -3.0961 20 6 10.1815 -0.4871 -3.9691 21 7 8.9879 -1.0136 -3.7946 22 14 11.0868 -0.7395 -5.5835 23 1 12.3724 -1.4367 -5.3264 24 1 10.2520 -1.5618 -6.4957 25 1 11.3557 0.5790 -6.2116 26 6 10.6081 1.2015 -0.6121 27 6 9.8459 0.6224 0.6059 28 6 10.4904 -0.6789 1.0880 29 6 9.7676 1.6455 1.7408 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 2.2574 3.7952 0.0085 38 1 3.4593 5.9648 -0.0026 39 1 5.9227 5.9872 -0.0108 40 1 8.0740 2.4473 -0.0071 41 1 8.0324 0.3275 -2.1337 42 1 8.7729 -1.1723 -1.5082 43 1 8.5782 -1.5324 -4.5045 44 1 11.6811 1.0493 -0.4954 45 1 10.3851 2.2618 -0.7300 46 1 11.5143 -0.4814 1.4051 47 1 9.9204 -1.0773 1.9273 48 1 10.4954 -1.4048 0.2749 49 1 9.2670 2.5457 1.3845 50 1 9.2053 1.2223 2.5733 51 1 10.7747 1.8971 2.0732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974992652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:03 Heat of formation + Delta-G solvation = -13.330348 kcal Electronic energy + Delta-G solvation = -31681.705285 eV Core-core repulsion = 27582.280458 eV Total energy + Delta-G solvation = -4099.424827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.94139 -39.34166 -38.42106 -37.53974 -34.21000 -33.72466 -32.98726 -32.23548 -30.64815 -30.55315 -28.00017 -26.93962 -26.68104 -25.53052 -24.74744 -23.37492 -22.89228 -21.71848 -20.62559 -19.80024 -18.83037 -18.25039 -17.48550 -16.98110 -16.58204 -16.53084 -15.46470 -15.30667 -14.94746 -14.68688 -14.49841 -14.12214 -13.96207 -13.82162 -13.70571 -13.52490 -13.27441 -13.02979 -12.86519 -12.37231 -12.34104 -12.14253 -11.93478 -11.88228 -11.80280 -11.55883 -11.27095 -11.20302 -10.96261 -10.89883 -10.87569 -10.69251 -10.29206 -10.15245 -10.04061 -9.96585 -9.87520 -9.77496 -9.53519 -9.34023 -8.57014 -8.52722 -8.20376 -6.72015 -5.59447 -2.93812 0.63905 1.10633 2.92449 3.05379 3.46609 3.50442 3.52412 3.54579 3.98266 4.27505 4.41503 4.56333 4.59169 4.63887 4.67449 4.86036 4.94562 4.97637 5.08654 5.13015 5.19324 5.37461 5.40143 5.43707 5.45923 5.63361 5.72186 5.73934 5.77824 5.79662 5.85770 5.94622 5.99986 6.04106 6.16381 6.23513 6.27055 6.32986 6.39237 6.51171 6.69874 6.73677 6.79024 6.91155 7.09478 7.13575 7.63075 7.67961 7.78432 7.94032 8.16668 8.36067 8.78246 9.31774 9.92691 10.59027 11.51084 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.003217 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.166074 B = 8700.480108 C = 9549.575057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.267 6.267 5 C 0.138 3.862 6 C -0.179 4.179 7 C -0.113 4.113 8 C 0.055 3.945 9 N -0.419 5.419 10 C 0.054 3.946 11 C 0.567 3.433 12 O -0.517 6.517 13 N -0.691 5.691 14 C 0.123 3.877 15 H 0.089 0.911 16 C 0.176 3.824 17 N -0.602 5.602 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.143 3.857 27 C -0.089 4.089 28 C -0.125 4.125 29 C -0.131 4.131 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.404 0.596 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.252 0.748 44 H 0.040 0.960 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.276 10.699 12.652 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.177 6.177 5 C 0.087 3.913 6 C -0.206 4.206 7 C -0.133 4.133 8 C -0.105 4.105 9 N -0.130 5.130 10 C -0.086 4.086 11 C 0.351 3.649 12 O -0.392 6.392 13 N -0.342 5.342 14 C 0.019 3.981 15 H 0.107 0.893 16 C 0.051 3.949 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.017 3.983 27 C -0.091 4.091 28 C -0.182 4.182 29 C -0.189 4.189 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.241 0.759 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.716 9.528 12.428 20.817 hybrid contribution -0.561 0.678 -1.068 1.384 sum -14.278 10.206 11.360 20.906 Atomic orbital electron populations 1.21689 0.94398 1.02571 1.01866 1.21461 0.95553 0.94538 1.04579 1.23017 0.78861 0.99561 1.01030 1.86445 1.20581 1.24533 1.86150 1.20024 0.92338 0.85666 0.93235 1.21722 1.00905 0.91912 1.06013 1.22157 0.95798 0.98263 0.97063 1.22683 0.91326 0.96432 1.00094 1.67646 1.39922 0.97423 1.08040 1.20909 0.88654 0.93086 1.05937 1.17514 0.82505 0.87006 0.77896 1.90825 1.71650 1.27348 1.49399 1.45821 1.05047 1.10531 1.72824 1.22500 0.89648 0.85961 1.00028 0.89284 1.21515 0.87015 0.98051 0.88335 1.44426 1.16385 1.60159 1.11909 1.18974 0.99381 1.27666 0.89570 0.90587 1.24800 0.96885 1.00367 0.98376 1.69962 1.14956 1.38966 1.32698 0.86233 0.78553 0.77573 0.83573 1.21254 1.21706 1.21331 1.21636 0.96291 0.93936 0.86427 1.22004 0.95366 0.96405 0.95294 1.21589 0.99283 0.96564 1.00790 1.21681 1.01116 0.98549 0.97578 0.92584 0.92489 0.91647 0.90264 0.90482 0.92131 0.92016 0.83912 0.84180 0.81929 0.75907 0.93463 0.92827 0.93744 0.94148 0.96585 0.92886 0.93440 0.91294 0.92711 0.93012 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 2 C -0.12 -1.22 6.30 -26.73 -0.17 -1.38 16 3 C 0.05 0.52 4.76 37.16 0.18 0.70 16 4 O -0.27 -4.11 8.20 -40.59 -0.33 -4.45 16 5 C 0.14 2.03 6.71 -38.55 -0.26 1.77 16 6 C -0.18 -1.87 9.13 -39.14 -0.36 -2.23 16 7 C -0.11 -1.01 10.10 -39.36 -0.40 -1.41 16 8 C 0.06 0.60 11.17 -17.55 -0.20 0.40 16 9 N -0.42 -6.17 9.54 -9.71 -0.09 -6.26 16 10 C 0.05 0.90 6.76 -82.88 -0.56 0.34 16 11 C 0.57 11.30 7.80 -12.34 -0.10 11.21 16 12 O -0.52 -11.76 14.78 -16.63 -0.25 -12.01 16 13 N -0.69 -13.24 4.40 -52.97 -0.23 -13.47 16 14 C 0.12 2.54 2.59 -66.10 -0.17 2.37 16 15 H 0.09 1.88 7.45 -51.93 -0.39 1.49 16 16 C 0.18 4.54 4.73 -3.06 -0.01 4.52 16 17 N -0.60 -15.63 3.38 -170.07 -0.58 -16.20 16 18 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -28.10 10.31 55.49 0.57 -27.53 16 22 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.14 3.00 6.12 -2.53 -0.02 2.98 16 27 C -0.09 -1.59 0.83 -152.36 -0.13 -1.71 16 28 C -0.12 -2.10 8.61 37.16 0.32 -1.78 16 29 C -0.13 -1.90 8.35 37.16 0.31 -1.59 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.06 0.50 7.69 -51.93 -0.40 0.10 16 36 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 37 H 0.14 1.06 6.46 -52.49 -0.34 0.72 16 38 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 39 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.40 7.24 6.38 -40.82 -0.26 6.98 16 41 H 0.05 1.40 7.41 -51.93 -0.38 1.02 16 42 H 0.05 1.54 7.38 -51.93 -0.38 1.15 16 43 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.04 0.82 8.05 -51.93 -0.42 0.41 16 45 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 1.35 7.81 -51.93 -0.41 0.94 16 49 H 0.05 0.78 6.27 -51.93 -0.33 0.45 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -34.90 407.31 -9.55 -44.44 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.32 Total: 5.01 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.44 Total: 6.59 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.33 Total: -63.46 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.58 Total: -16.45 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.90 -9.55 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974992652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.114 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds