Wall clock time and date at job start Wed Apr 1 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 O 1.42902 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.35646 * 117.00292 * 179.97438 * 4 3 2 6 6 C 1.39345 * 120.53790 * 0.27913 * 5 4 3 7 7 C 1.38306 * 118.43781 * 180.26196 * 6 5 4 8 8 C 1.38760 * 119.44351 * 359.72809 * 7 6 5 9 9 N 1.31373 * 121.06851 * 0.02562 * 8 7 6 10 10 C 1.32852 * 121.69810 * 359.97438 * 9 8 7 11 11 C 1.47835 * 119.78636 * 180.02562 * 10 9 8 12 12 O 1.21554 * 119.99857 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99715 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00063 * 179.97438 * 13 11 10 15 15 H 1.09005 * 110.63957 * 328.14482 * 14 13 11 16 16 C 1.54327 * 110.71866 * 91.47566 * 14 13 11 17 17 N 1.47024 * 107.26774 * 96.17335 * 16 14 13 18 18 C 1.36941 * 125.64618 * 179.20447 * 17 16 14 19 19 H 1.08005 * 119.99780 * 179.68989 * 18 17 16 20 20 C 1.38813 * 119.99913 * 359.69358 * 18 17 16 21 21 N 1.31616 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47563 * 59.99703 * 22 20 18 24 24 H 1.48504 * 109.46777 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47166 * 299.99426 * 22 20 18 26 26 C 1.47426 * 108.70449 * 358.94057 * 17 16 14 27 27 C 1.54912 * 104.83261 * 24.12870 * 26 17 16 28 28 C 1.53004 * 111.00325 * 81.06512 * 27 26 17 29 29 C 1.52998 * 111.00343 * 204.88065 * 27 26 17 30 30 H 1.08996 * 109.47054 * 299.99569 * 1 2 3 31 31 H 1.09001 * 109.47143 * 60.00378 * 1 2 3 32 32 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47244 * 239.99929 * 2 1 3 34 34 H 1.09009 * 109.47225 * 119.99925 * 2 1 3 35 35 H 1.08996 * 109.46907 * 60.00342 * 3 2 1 36 36 H 1.08996 * 109.47338 * 299.99906 * 3 2 1 37 37 H 1.07997 * 120.78102 * 359.96219 * 6 5 4 38 38 H 1.08007 * 120.27470 * 179.70240 * 7 6 5 39 39 H 1.08010 * 119.46469 * 180.02562 * 8 7 6 40 40 H 0.97005 * 120.00259 * 0.02562 * 13 11 10 41 41 H 1.08995 * 109.88184 * 336.75758 * 16 14 13 42 42 H 1.09002 * 109.88385 * 215.58765 * 16 14 13 43 43 H 0.97001 * 119.99407 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.36518 * 142.96440 * 26 17 16 45 45 H 1.08997 * 110.36787 * 265.28818 * 26 17 16 46 46 H 1.08994 * 109.46864 * 61.44984 * 28 27 26 47 47 H 1.09000 * 109.46578 * 181.45533 * 28 27 26 48 48 H 1.08996 * 109.46833 * 301.45173 * 28 27 26 49 49 H 1.08992 * 109.47271 * 58.54108 * 29 27 26 50 50 H 1.09003 * 109.47056 * 178.54990 * 29 27 26 51 51 H 1.09006 * 109.46578 * 298.54351 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0848 2.6512 0.0001 6 6 3.3369 3.8269 0.0050 7 6 4.0095 5.0354 -0.0013 8 6 5.3971 5.0437 -0.0063 9 7 6.0818 3.9225 -0.0058 10 6 5.4809 2.7376 0.0001 11 6 6.2931 1.5023 0.0010 12 8 5.7473 0.4162 0.0059 13 7 7.6385 1.5805 -0.0036 14 6 8.4434 0.3565 -0.0021 15 1 7.9323 -0.4388 0.5406 16 6 8.7698 -0.0841 -1.4446 17 7 10.1047 0.4395 -1.7694 18 6 10.7681 0.2549 -2.9531 19 1 11.7477 0.6866 -3.0961 20 6 10.1815 -0.4871 -3.9691 21 7 8.9879 -1.0136 -3.7946 22 14 11.0868 -0.7395 -5.5835 23 1 12.3724 -1.4367 -5.3264 24 1 10.2520 -1.5618 -6.4957 25 1 11.3557 0.5790 -6.2116 26 6 10.6081 1.2015 -0.6121 27 6 9.8459 0.6224 0.6059 28 6 10.4904 -0.6789 1.0880 29 6 9.7676 1.6455 1.7408 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 2.2574 3.7952 0.0085 38 1 3.4593 5.9648 -0.0026 39 1 5.9227 5.9872 -0.0108 40 1 8.0740 2.4473 -0.0071 41 1 8.0324 0.3275 -2.1337 42 1 8.7729 -1.1723 -1.5082 43 1 8.5782 -1.5324 -4.5045 44 1 11.6811 1.0493 -0.4954 45 1 10.3851 2.2618 -0.7300 46 1 11.5143 -0.4814 1.4051 47 1 9.9204 -1.0773 1.9273 48 1 10.4954 -1.4048 0.2749 49 1 9.2670 2.5457 1.3845 50 1 9.2053 1.2223 2.5733 51 1 10.7747 1.8971 2.0732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974992652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:02 Heat of formation + Delta-G solvation = -36.253545 kcal Electronic energy + Delta-G solvation = -31682.699310 eV Core-core repulsion = 27582.280458 eV Total energy + Delta-G solvation = -4100.418852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00267 -40.87110 -39.43283 -39.09794 -35.68749 -34.95785 -34.48972 -33.26198 -32.61056 -31.60097 -29.77423 -28.09152 -27.63039 -27.42351 -26.02057 -24.84335 -23.94608 -22.69648 -22.17492 -21.44577 -20.32140 -19.31509 -18.72187 -18.65955 -18.02825 -17.42129 -17.03943 -16.70614 -16.32575 -16.03446 -15.63583 -15.54265 -15.34292 -15.21488 -15.00146 -14.74909 -14.63431 -14.22527 -13.90601 -13.76017 -13.60175 -13.45655 -13.15132 -13.04913 -12.98403 -12.97791 -12.82991 -12.64443 -12.58396 -12.54224 -12.17361 -11.95950 -11.85213 -11.73950 -11.65328 -11.52783 -11.32580 -11.23762 -10.82622 -10.75252 -10.57590 -9.98048 -9.47894 -8.89173 -7.82304 -5.19728 -0.34784 0.23398 1.42795 1.47473 1.53732 1.79787 2.04464 2.17567 2.49620 2.84835 3.23048 3.35247 3.50733 3.58381 3.69380 3.73766 3.88949 3.94334 3.97359 4.04016 4.07237 4.15431 4.23241 4.39998 4.48528 4.49049 4.51283 4.52226 4.69166 4.74673 4.85176 4.87740 4.91029 4.95199 5.00066 5.04697 5.11190 5.14066 5.14234 5.17334 5.29728 5.31331 5.33939 5.45526 5.46873 5.56267 5.71206 5.75569 6.17375 6.25168 6.52121 6.85199 7.07927 7.28803 7.77811 8.43366 9.26920 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.003217 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.166074 B = 8700.480108 C = 9549.575057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.044 3.956 4 O -0.308 6.308 5 C 0.123 3.877 6 C -0.172 4.172 7 C -0.085 4.085 8 C 0.053 3.947 9 N -0.442 5.442 10 C 0.005 3.995 11 C 0.559 3.441 12 O -0.562 6.562 13 N -0.685 5.685 14 C 0.135 3.865 15 H 0.077 0.923 16 C 0.197 3.803 17 N -0.619 5.619 18 C -0.238 4.238 19 H 0.088 0.912 20 C -0.072 4.072 21 N -0.955 5.955 22 Si 0.981 3.019 23 H -0.273 1.273 24 H -0.299 1.299 25 H -0.276 1.276 26 C 0.139 3.861 27 C -0.074 4.074 28 C -0.121 4.121 29 C -0.122 4.122 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.179 0.821 38 H 0.193 0.807 39 H 0.199 0.801 40 H 0.411 0.589 41 H -0.006 1.006 42 H 0.008 0.992 43 H 0.243 0.757 44 H 0.053 0.947 45 H 0.026 0.974 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.030 0.970 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 14.612 14.199 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.030 4.030 4 O -0.219 6.219 5 C 0.072 3.928 6 C -0.198 4.198 7 C -0.104 4.104 8 C -0.110 4.110 9 N -0.154 5.154 10 C -0.131 4.131 11 C 0.345 3.655 12 O -0.441 6.441 13 N -0.337 5.337 14 C 0.029 3.971 15 H 0.096 0.904 16 C 0.070 3.930 17 N -0.345 5.345 18 C -0.367 4.367 19 H 0.106 0.894 20 C -0.265 4.265 21 N -0.604 5.604 22 Si 0.809 3.191 23 H -0.199 1.199 24 H -0.226 1.226 25 H -0.202 1.202 26 C 0.014 3.986 27 C -0.076 4.076 28 C -0.179 4.179 29 C -0.180 4.180 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.196 0.804 38 H 0.210 0.790 39 H 0.216 0.784 40 H 0.249 0.751 41 H 0.013 0.987 42 H 0.026 0.974 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.193 13.469 14.009 24.065 hybrid contribution -0.476 -0.402 -1.543 1.664 sum -14.668 13.067 12.467 23.267 Atomic orbital electron populations 1.21647 0.91650 1.03212 1.03161 1.21501 0.97833 0.94453 1.02613 1.23313 0.76743 0.99931 1.03056 1.86405 1.23161 1.25908 1.86403 1.20265 0.91997 0.86910 0.93614 1.22168 1.02494 0.90690 1.04455 1.22753 0.95178 0.99606 0.92902 1.23461 0.92801 0.96289 0.98420 1.67540 1.41080 0.97731 1.09021 1.20389 0.89336 0.92426 1.10964 1.18215 0.82658 0.88125 0.76463 1.90775 1.72398 1.29480 1.51396 1.45683 1.05085 1.10025 1.72877 1.22131 0.91715 0.86684 0.96532 0.90447 1.21039 0.86198 0.95082 0.90633 1.44675 1.16387 1.60572 1.12886 1.19469 0.99825 1.26862 0.90505 0.89390 1.25733 0.97779 1.00730 1.02214 1.70258 1.16847 1.40065 1.33262 0.85114 0.77407 0.77644 0.78939 1.19858 1.22561 1.20171 1.21880 0.97198 0.93773 0.85774 1.21988 0.92206 0.97951 0.95412 1.21579 1.01144 0.95065 1.00111 1.21629 1.03076 0.97205 0.96087 0.90885 0.91468 0.91428 0.92858 0.91956 0.89391 0.90293 0.80376 0.78974 0.78381 0.75083 0.98740 0.97374 0.94812 0.92889 0.95644 0.90268 0.91391 0.95041 0.92515 0.91849 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.13 -2.60 6.30 30.59 0.19 -2.41 16 3 C 0.04 0.88 4.76 71.98 0.34 1.23 16 4 O -0.31 -9.93 8.20 -68.62 -0.56 -10.49 16 5 C 0.12 3.62 6.71 22.93 0.15 3.78 16 6 C -0.17 -3.04 9.13 22.55 0.21 -2.83 16 7 C -0.08 -1.11 10.10 22.41 0.23 -0.88 16 8 C 0.05 0.96 11.17 84.89 0.95 1.91 16 9 N -0.44 -12.71 9.54 -184.63 -1.76 -14.47 16 10 C 0.00 0.17 6.76 41.93 0.28 0.46 16 11 C 0.56 23.99 7.80 86.78 0.68 24.67 16 12 O -0.56 -28.12 14.78 17.10 0.25 -27.87 16 13 N -0.69 -27.79 4.40 -439.79 -1.94 -29.73 16 14 C 0.14 5.92 2.59 46.18 0.12 6.04 16 15 H 0.08 3.55 7.45 -2.38 -0.02 3.54 16 16 C 0.20 11.01 4.73 86.73 0.41 11.42 16 17 N -0.62 -33.52 3.38 -691.96 -2.34 -35.86 16 18 C -0.24 -13.91 10.28 84.03 0.86 -13.05 16 19 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 20 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 21 N -0.96 -62.53 10.31 21.65 0.22 -62.31 16 22 Si 0.98 48.28 29.55 68.60 2.03 50.30 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 26 C 0.14 5.77 6.12 86.86 0.53 6.30 16 27 C -0.07 -2.63 0.83 -50.79 -0.04 -2.67 16 28 C -0.12 -4.03 8.61 71.98 0.62 -3.41 16 29 C -0.12 -3.24 8.35 71.98 0.60 -2.64 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.25 7.69 -2.39 -0.02 1.23 16 36 H 0.08 1.27 7.71 -2.39 -0.02 1.25 16 37 H 0.18 1.79 6.46 -2.91 -0.02 1.77 16 38 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.41 15.18 6.38 -92.70 -0.59 14.59 16 41 H -0.01 -0.37 7.41 -2.39 -0.02 -0.39 16 42 H 0.01 0.52 7.38 -2.39 -0.02 0.50 16 43 H 0.24 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.05 2.08 8.05 -2.39 -0.02 2.07 16 45 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 46 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.03 1.26 7.81 -2.39 -0.02 1.24 16 49 H 0.06 1.50 6.27 -2.39 -0.02 1.48 16 50 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -86.71 407.31 3.55 -83.16 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.33 Total: 24.32 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 7.31 Total: 22.94 kcal Atomic # 7 Polarization: -136.55 SS G_CDS: -5.81 Total: -142.37 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.31 Total: -38.36 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.30 kcal Total: -86.71 3.55 -83.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974992652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.902 kcal (2) G-P(sol) polarization free energy of solvation -86.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds