Wall clock time and date at job start Wed Apr 1 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.45711 * 2 1 4 4 C 1.53106 * 109.46720 * 240.01483 * 2 1 3 5 5 C 1.53428 * 109.72659 * 170.12920 * 4 2 1 6 6 C 1.50601 * 108.31287 * 50.01338 * 5 4 2 7 7 O 1.33188 * 129.60165 * 163.21729 * 6 5 4 8 8 N 1.21436 * 111.56897 * 180.18183 * 7 6 5 9 9 C 1.31492 * 111.52652 * 359.96246 * 8 7 6 10 10 C 1.48331 * 127.15638 * 179.97438 * 9 8 7 11 11 O 1.21494 * 119.99953 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99379 * 0.02562 * 10 9 8 13 13 C 1.46508 * 119.99519 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.88809 * 325.70144 * 13 12 10 15 15 C 1.54914 * 111.03460 * 89.60718 * 13 12 10 16 16 N 1.47423 * 104.83031 * 81.07949 * 15 13 12 17 17 C 1.36940 * 125.64462 * 204.07996 * 16 15 13 18 18 H 1.08001 * 119.99635 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00209 * 0.05503 * 17 16 15 20 20 N 1.31622 * 119.99618 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46912 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46739 * 120.00173 * 21 19 17 24 24 H 1.48497 * 109.47037 * 239.99916 * 21 19 17 25 25 C 1.47018 * 108.70681 * 24.12703 * 16 15 13 26 26 C 1.54325 * 107.26892 * 358.94202 * 25 16 15 27 27 C 1.53001 * 110.71912 * 219.44244 * 26 25 16 28 28 C 1.52997 * 110.72048 * 96.17139 * 26 25 16 29 29 C 1.35378 * 123.76333 * 343.62838 * 6 5 4 30 30 C 1.50069 * 124.93151 * 359.10336 * 29 6 5 31 31 H 1.08998 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47309 * 299.97997 * 1 2 3 33 33 H 1.09000 * 109.46908 * 59.98842 * 1 2 3 34 34 H 1.09000 * 109.42930 * 50.05043 * 4 2 1 35 35 H 1.09002 * 109.42675 * 290.20633 * 4 2 1 36 36 H 1.08995 * 109.69840 * 290.30593 * 5 4 2 37 37 H 1.09007 * 109.72541 * 169.73309 * 5 4 2 38 38 H 0.96995 * 120.00590 * 0.02562 * 12 10 9 39 39 H 1.08998 * 110.36125 * 199.91476 * 15 13 12 40 40 H 1.08994 * 110.36786 * 322.23754 * 15 13 12 41 41 H 0.97000 * 119.99811 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.88436 * 239.52298 * 25 16 15 43 43 H 1.09004 * 110.01232 * 118.42707 * 25 16 15 44 44 H 1.09000 * 109.47491 * 173.52205 * 27 26 25 45 45 H 1.09003 * 109.47292 * 293.52292 * 27 26 25 46 46 H 1.09004 * 109.47114 * 53.51915 * 27 26 25 47 47 H 1.08993 * 109.47176 * 306.47104 * 28 26 25 48 48 H 1.08996 * 109.47384 * 66.47855 * 28 26 25 49 49 H 1.09003 * 109.46655 * 186.47433 * 28 26 25 50 50 H 1.09006 * 109.86055 * 224.64450 * 30 29 6 51 51 H 1.08996 * 109.53244 * 104.07844 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0403 -0.7214 -1.2503 5 6 3.5544 -0.5140 -1.3862 6 6 4.1983 -0.8491 -0.0667 7 8 5.4744 -1.1075 0.2140 8 7 5.6330 -1.3424 1.3948 9 6 4.4991 -1.2735 2.0571 10 6 4.2945 -1.4973 3.5090 11 8 3.1822 -1.3998 3.9879 12 7 5.3427 -1.8089 4.2969 13 6 5.1408 -2.0294 5.7312 14 1 4.3564 -1.3787 6.1178 15 6 4.8236 -3.5169 6.0258 16 7 6.1362 -4.1879 6.0350 17 6 6.3542 -5.5180 5.7929 18 1 7.3582 -5.9149 5.8236 19 6 5.2850 -6.3559 5.5073 20 7 4.0615 -5.8720 5.4698 21 14 5.5825 -8.1701 5.1763 22 1 7.0353 -8.4601 5.2785 23 1 4.8443 -8.9831 6.1759 24 1 5.1043 -8.5092 3.8120 25 6 7.1722 -3.1930 6.3483 26 6 6.4645 -1.8319 6.5160 27 6 7.2983 -0.7083 5.8969 28 6 6.1812 -1.5473 7.9924 29 6 3.5173 -0.9482 1.0991 30 6 2.0416 -0.7233 1.2541 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5135 0.8901 33 1 -0.3633 0.5140 -0.8899 34 1 1.5388 -0.3197 -2.1308 35 1 1.8264 -1.7870 -1.1668 36 1 3.7614 0.5249 -1.6426 37 1 3.9472 -1.1695 -2.1636 38 1 6.2307 -1.8863 3.9147 39 1 4.3399 -3.6163 6.9975 40 1 4.1907 -3.9323 5.2417 41 1 3.3143 -6.4576 5.2706 42 1 7.8925 -3.1382 5.5322 43 1 7.6808 -3.4628 7.2739 44 1 6.7311 0.2221 5.9235 45 1 8.2219 -0.5870 6.4630 46 1 7.5361 -0.9595 4.8633 47 1 5.6366 -2.3859 8.4260 48 1 7.1233 -1.4120 8.5236 49 1 5.5818 -0.6410 8.0791 50 1 1.8509 -0.1109 2.1354 51 1 1.5356 -1.6832 1.3571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977413003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:53 Heat of formation + Delta-G solvation = 35.765846 kcal Electronic energy + Delta-G solvation = -32114.767519 eV Core-core repulsion = 28017.471662 eV Total energy + Delta-G solvation = -4097.295857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.01239 -39.68096 -38.37379 -37.79955 -33.93532 -33.75425 -33.00970 -32.53833 -30.69420 -30.37815 -28.25051 -27.32941 -26.82736 -25.61067 -24.57851 -23.81896 -22.89533 -22.05602 -20.64851 -20.02366 -19.35199 -18.68692 -17.74529 -17.42890 -16.73658 -16.35878 -15.80022 -15.24187 -14.75288 -14.53193 -14.32554 -14.09630 -13.99264 -13.78183 -13.73725 -13.46438 -13.34011 -13.16829 -12.85466 -12.68530 -12.31572 -12.18628 -11.96551 -11.91036 -11.75504 -11.41740 -11.29654 -11.17213 -11.15623 -11.00571 -10.88106 -10.78227 -10.67298 -10.42081 -10.19207 -10.10514 -9.97536 -9.82358 -9.71302 -9.67902 -9.09334 -8.68170 -8.39998 -6.79962 -5.61973 -3.04630 1.25097 1.77041 2.88014 3.33477 3.40812 3.45938 3.48719 3.57805 4.13559 4.40837 4.47042 4.50142 4.54026 4.83222 4.89471 4.97403 5.06124 5.12830 5.21302 5.24789 5.30191 5.42053 5.48403 5.53602 5.54210 5.59782 5.60738 5.63832 5.71501 5.79491 5.79799 5.88684 5.89536 6.03384 6.03534 6.10101 6.16812 6.18559 6.25692 6.28062 6.39504 6.50006 6.60373 6.69527 6.73293 6.96601 7.46639 7.63986 7.82178 7.92139 8.14705 8.39436 8.55280 9.23349 9.84945 10.48825 11.41090 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.003490 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.060410 B = 8020.995456 C = 9179.797269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.115 4.115 5 C -0.032 4.032 6 C -0.047 4.047 7 O 0.124 5.876 8 N -0.337 5.337 9 C -0.007 4.007 10 C 0.597 3.403 11 O -0.524 6.524 12 N -0.683 5.683 13 C 0.122 3.878 14 H 0.089 0.911 15 C 0.147 3.853 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.142 3.858 26 C -0.087 4.087 27 C -0.132 4.132 28 C -0.128 4.128 29 C -0.150 4.150 30 C -0.040 4.040 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.402 0.598 39 H 0.023 0.977 40 H 0.113 0.887 41 H 0.251 0.749 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.051 0.949 50 H 0.090 0.910 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 15.853 -11.765 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.070 4.070 6 C -0.111 4.111 7 O 0.051 5.949 8 N -0.039 5.039 9 C -0.165 4.165 10 C 0.380 3.620 11 O -0.399 6.399 12 N -0.333 5.333 13 C 0.017 3.983 14 H 0.107 0.893 15 C 0.021 3.979 16 N -0.327 5.327 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.219 1.219 25 C 0.016 3.984 26 C -0.088 4.088 27 C -0.190 4.190 28 C -0.185 4.185 29 C -0.154 4.154 30 C -0.077 4.077 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.238 0.762 39 H 0.041 0.959 40 H 0.131 0.869 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.108 0.892 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.988 15.427 -11.008 19.055 hybrid contribution 0.025 -1.075 -0.261 1.107 sum -1.963 14.351 -11.269 18.352 Atomic orbital electron populations 1.21803 0.94333 1.02306 1.01905 1.21309 0.96198 0.99692 0.94121 0.90744 1.21734 0.92953 1.02033 0.98527 1.20214 0.94422 1.02935 0.89432 1.24080 0.83699 1.04453 0.98913 1.84669 1.26882 1.62921 1.20407 1.74566 1.22835 1.16610 0.89934 1.23182 0.89951 1.05934 0.97444 1.16741 0.85115 0.77719 0.82465 1.90762 1.23334 1.52162 1.73661 1.45675 1.10288 1.68283 1.09095 1.22630 0.96463 1.01111 0.78058 0.89257 1.22311 0.88960 0.85301 1.01321 1.44460 1.01425 1.04471 1.82337 1.19086 0.93380 0.82422 1.40264 0.90487 1.24787 0.95288 0.98261 1.02188 1.69811 0.97887 1.33347 1.55564 0.86035 0.77269 0.84910 0.77513 1.20549 1.21737 1.21852 1.21419 0.92048 0.87504 0.97413 1.21845 0.95367 0.95865 0.95704 1.21730 0.99362 0.97614 1.00263 1.21682 1.01302 1.01518 0.94025 1.20640 0.98577 1.05523 0.90696 1.20061 0.87357 1.01893 0.98380 0.92296 0.92228 0.92530 0.90127 0.90888 0.88922 0.88955 0.76193 0.95901 0.86946 0.93773 0.96044 0.95704 0.92840 0.92577 0.92910 0.91673 0.92614 0.93029 0.89208 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.16 37.16 0.34 -0.75 16 2 C -0.09 -0.82 2.71 -90.28 -0.24 -1.06 16 3 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 4 C -0.11 -0.83 5.18 -26.45 -0.14 -0.96 16 5 C -0.03 -0.24 6.31 -27.71 -0.17 -0.42 16 6 C -0.05 -0.58 7.38 -35.38 -0.26 -0.84 16 7 O 0.12 1.76 11.18 19.19 0.21 1.98 16 8 N -0.34 -5.66 11.89 33.29 0.40 -5.27 16 9 C -0.01 -0.12 7.19 -82.82 -0.60 -0.71 16 10 C 0.60 11.93 7.85 -12.11 -0.10 11.83 16 11 O -0.52 -11.49 15.78 5.37 0.08 -11.40 16 12 N -0.68 -13.31 4.62 -52.51 -0.24 -13.55 16 13 C 0.12 2.45 2.61 -65.78 -0.17 2.28 16 14 H 0.09 1.78 7.53 -51.93 -0.39 1.38 16 15 C 0.15 3.68 5.27 -2.53 -0.01 3.66 16 16 N -0.60 -15.41 3.39 -170.08 -0.58 -15.98 16 17 C -0.22 -6.30 10.27 -15.06 -0.15 -6.46 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.60 10.09 55.49 0.56 -27.04 16 21 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 C 0.14 2.95 6.41 -3.07 -0.02 2.93 16 26 C -0.09 -1.50 0.80 -152.68 -0.12 -1.62 16 27 C -0.13 -1.88 8.07 37.16 0.30 -1.58 16 28 C -0.13 -1.97 8.41 37.16 0.31 -1.65 16 29 C -0.15 -2.19 6.05 -104.91 -0.63 -2.82 16 30 C -0.04 -0.50 4.96 -27.90 -0.14 -0.63 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 35 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.40 7.57 6.80 -40.82 -0.28 7.29 16 39 H 0.02 0.61 7.80 -51.93 -0.41 0.21 16 40 H 0.11 3.29 5.87 -51.93 -0.31 2.98 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.02 0.45 7.76 -51.93 -0.40 0.04 16 43 H 0.03 0.52 7.84 -51.93 -0.41 0.11 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.77 6.41 -51.93 -0.33 0.43 16 47 H 0.06 1.13 7.57 -51.93 -0.39 0.73 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.09 1.22 7.84 -51.93 -0.41 0.81 16 51 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -32.82 399.28 -8.84 -41.66 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.36 Total: 5.13 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.91 Total: 0.83 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.14 Total: -61.84 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.30 Total: -9.42 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.82 -8.84 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977413003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.426 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds