Wall clock time and date at job start Wed Apr 1 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.45711 * 2 1 4 4 C 1.53106 * 109.46720 * 240.01483 * 2 1 3 5 5 C 1.53428 * 109.72659 * 170.12920 * 4 2 1 6 6 C 1.50601 * 108.31287 * 50.01338 * 5 4 2 7 7 O 1.33188 * 129.60165 * 163.21729 * 6 5 4 8 8 N 1.21436 * 111.56897 * 180.18183 * 7 6 5 9 9 C 1.31492 * 111.52652 * 359.96246 * 8 7 6 10 10 C 1.48331 * 127.15638 * 179.97438 * 9 8 7 11 11 O 1.21494 * 119.99953 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99379 * 0.02562 * 10 9 8 13 13 C 1.46508 * 119.99519 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.88809 * 325.70144 * 13 12 10 15 15 C 1.54914 * 111.03460 * 89.60718 * 13 12 10 16 16 N 1.47423 * 104.83031 * 81.07949 * 15 13 12 17 17 C 1.36940 * 125.64462 * 204.07996 * 16 15 13 18 18 H 1.08001 * 119.99635 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00209 * 0.05503 * 17 16 15 20 20 N 1.31622 * 119.99618 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46912 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46739 * 120.00173 * 21 19 17 24 24 H 1.48497 * 109.47037 * 239.99916 * 21 19 17 25 25 C 1.47018 * 108.70681 * 24.12703 * 16 15 13 26 26 C 1.54325 * 107.26892 * 358.94202 * 25 16 15 27 27 C 1.53001 * 110.71912 * 219.44244 * 26 25 16 28 28 C 1.52997 * 110.72048 * 96.17139 * 26 25 16 29 29 C 1.35378 * 123.76333 * 343.62838 * 6 5 4 30 30 C 1.50069 * 124.93151 * 359.10336 * 29 6 5 31 31 H 1.08998 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47309 * 299.97997 * 1 2 3 33 33 H 1.09000 * 109.46908 * 59.98842 * 1 2 3 34 34 H 1.09000 * 109.42930 * 50.05043 * 4 2 1 35 35 H 1.09002 * 109.42675 * 290.20633 * 4 2 1 36 36 H 1.08995 * 109.69840 * 290.30593 * 5 4 2 37 37 H 1.09007 * 109.72541 * 169.73309 * 5 4 2 38 38 H 0.96995 * 120.00590 * 0.02562 * 12 10 9 39 39 H 1.08998 * 110.36125 * 199.91476 * 15 13 12 40 40 H 1.08994 * 110.36786 * 322.23754 * 15 13 12 41 41 H 0.97000 * 119.99811 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.88436 * 239.52298 * 25 16 15 43 43 H 1.09004 * 110.01232 * 118.42707 * 25 16 15 44 44 H 1.09000 * 109.47491 * 173.52205 * 27 26 25 45 45 H 1.09003 * 109.47292 * 293.52292 * 27 26 25 46 46 H 1.09004 * 109.47114 * 53.51915 * 27 26 25 47 47 H 1.08993 * 109.47176 * 306.47104 * 28 26 25 48 48 H 1.08996 * 109.47384 * 66.47855 * 28 26 25 49 49 H 1.09003 * 109.46655 * 186.47433 * 28 26 25 50 50 H 1.09006 * 109.86055 * 224.64450 * 30 29 6 51 51 H 1.08996 * 109.53244 * 104.07844 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0403 -0.7214 -1.2503 5 6 3.5544 -0.5140 -1.3862 6 6 4.1983 -0.8491 -0.0667 7 8 5.4744 -1.1075 0.2140 8 7 5.6330 -1.3424 1.3948 9 6 4.4991 -1.2735 2.0571 10 6 4.2945 -1.4973 3.5090 11 8 3.1822 -1.3998 3.9879 12 7 5.3427 -1.8089 4.2969 13 6 5.1408 -2.0294 5.7312 14 1 4.3564 -1.3787 6.1178 15 6 4.8236 -3.5169 6.0258 16 7 6.1362 -4.1879 6.0350 17 6 6.3542 -5.5180 5.7929 18 1 7.3582 -5.9149 5.8236 19 6 5.2850 -6.3559 5.5073 20 7 4.0615 -5.8720 5.4698 21 14 5.5825 -8.1701 5.1763 22 1 7.0353 -8.4601 5.2785 23 1 4.8443 -8.9831 6.1759 24 1 5.1043 -8.5092 3.8120 25 6 7.1722 -3.1930 6.3483 26 6 6.4645 -1.8319 6.5160 27 6 7.2983 -0.7083 5.8969 28 6 6.1812 -1.5473 7.9924 29 6 3.5173 -0.9482 1.0991 30 6 2.0416 -0.7233 1.2541 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5135 0.8901 33 1 -0.3633 0.5140 -0.8899 34 1 1.5388 -0.3197 -2.1308 35 1 1.8264 -1.7870 -1.1668 36 1 3.7614 0.5249 -1.6426 37 1 3.9472 -1.1695 -2.1636 38 1 6.2307 -1.8863 3.9147 39 1 4.3399 -3.6163 6.9975 40 1 4.1907 -3.9323 5.2417 41 1 3.3143 -6.4576 5.2706 42 1 7.8925 -3.1382 5.5322 43 1 7.6808 -3.4628 7.2739 44 1 6.7311 0.2221 5.9235 45 1 8.2219 -0.5870 6.4630 46 1 7.5361 -0.9595 4.8633 47 1 5.6366 -2.3859 8.4260 48 1 7.1233 -1.4120 8.5236 49 1 5.5818 -0.6410 8.0791 50 1 1.8509 -0.1109 2.1354 51 1 1.5356 -1.6832 1.3571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977413003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:52 Heat of formation + Delta-G solvation = 15.629301 kcal Electronic energy + Delta-G solvation = -32115.640705 eV Core-core repulsion = 28017.471662 eV Total energy + Delta-G solvation = -4098.169043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.22309 -41.30716 -39.60060 -39.01921 -35.77405 -35.14467 -34.49015 -33.38974 -32.66881 -31.31948 -29.99509 -28.34952 -28.02066 -27.49667 -26.04886 -24.81048 -24.32867 -23.04890 -22.33640 -21.50766 -20.56917 -20.04254 -18.96403 -18.77854 -18.61560 -17.72626 -17.45254 -16.69216 -16.14641 -15.98893 -15.70026 -15.50693 -15.31986 -15.17125 -14.78585 -14.70269 -14.37430 -14.25870 -14.16613 -13.82711 -13.73431 -13.72935 -13.10598 -13.07583 -13.06320 -12.92283 -12.71059 -12.68778 -12.65415 -12.28308 -12.11119 -11.91984 -11.86118 -11.85021 -11.65668 -11.57465 -11.50401 -11.44263 -11.28006 -11.20616 -10.83016 -10.14340 -10.11651 -8.90899 -7.81055 -5.26248 -0.00057 0.61399 1.39993 1.41295 1.51737 1.76710 1.95246 2.09106 2.44160 2.84381 3.28806 3.45005 3.49648 3.58225 3.61990 3.86010 3.89285 3.93107 3.99359 4.04492 4.20948 4.24848 4.32936 4.43050 4.45946 4.54539 4.63772 4.73882 4.77044 4.77827 4.80123 4.85022 4.86805 4.95040 4.97437 5.02479 5.03353 5.12934 5.13320 5.18332 5.19709 5.25849 5.32068 5.40370 5.41467 5.46301 5.52555 5.56196 5.75083 6.24750 6.30475 6.89475 7.02212 7.04095 7.73248 8.36917 9.20036 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.003490 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.060410 B = 8020.995456 C = 9179.797269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.086 0.914 4 C -0.113 4.113 5 C -0.031 4.031 6 C -0.022 4.022 7 O 0.136 5.864 8 N -0.354 5.354 9 C -0.040 4.040 10 C 0.591 3.409 11 O -0.554 6.554 12 N -0.680 5.680 13 C 0.133 3.867 14 H 0.089 0.911 15 C 0.156 3.844 16 N -0.619 5.619 17 C -0.234 4.234 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.978 3.022 22 H -0.263 1.263 23 H -0.291 1.291 24 H -0.296 1.296 25 C 0.137 3.863 26 C -0.072 4.072 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.173 4.173 30 C -0.039 4.039 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.406 0.594 39 H -0.005 1.005 40 H 0.067 0.933 41 H 0.243 0.757 42 H 0.027 0.973 43 H 0.032 0.968 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.037 0.963 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 17.744 -14.097 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.104 0.896 4 C -0.150 4.150 5 C -0.068 4.068 6 C -0.087 4.087 7 O 0.061 5.939 8 N -0.056 5.056 9 C -0.196 4.196 10 C 0.376 3.624 11 O -0.431 6.431 12 N -0.330 5.330 13 C 0.027 3.973 14 H 0.107 0.893 15 C 0.029 3.971 16 N -0.344 5.344 17 C -0.363 4.363 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.218 1.218 24 H -0.223 1.223 25 C 0.012 3.988 26 C -0.074 4.074 27 C -0.182 4.182 28 C -0.182 4.182 29 C -0.179 4.179 30 C -0.076 4.076 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.243 0.757 39 H 0.012 0.988 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.525 17.334 -13.313 21.863 hybrid contribution -0.410 -1.658 0.426 1.760 sum -0.934 15.676 -12.887 20.315 Atomic orbital electron populations 1.21800 0.93517 1.02137 1.02738 1.21304 0.96834 0.99787 0.92698 0.89579 1.21785 0.92973 1.01352 0.98878 1.20622 0.93923 1.05330 0.86966 1.24977 0.82239 1.01313 1.00139 1.84631 1.28061 1.61947 1.19241 1.74535 1.22775 1.17366 0.90881 1.23050 0.91665 1.08318 0.96590 1.17152 0.84672 0.76903 0.83690 1.90728 1.24344 1.53441 1.74627 1.45630 1.10429 1.68082 1.08833 1.22377 0.98458 0.97391 0.79049 0.89262 1.21938 0.88375 0.88551 0.98193 1.44689 1.02744 1.04690 1.82323 1.19489 0.93617 0.83908 1.39306 0.89861 1.25647 0.95115 1.02562 1.02765 1.70118 0.98565 1.34325 1.56902 0.85005 0.77906 0.79759 0.76675 1.18688 1.21839 1.22311 1.21648 0.91353 0.88185 0.97599 1.21840 0.93442 0.95272 0.96803 1.21689 0.99994 0.96493 1.00035 1.21681 1.02738 1.01328 0.92444 1.20949 0.99286 1.06634 0.90995 1.20081 0.86433 1.01032 1.00083 0.93005 0.93054 0.90031 0.86507 0.92087 0.85688 0.86450 0.75744 0.98756 0.91495 0.94700 0.95461 0.95034 0.91453 0.89924 0.93375 0.94383 0.89920 0.90969 0.91324 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.16 71.98 0.66 -1.29 16 2 C -0.09 -1.36 2.71 -10.57 -0.03 -1.39 16 3 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 4 C -0.11 -1.24 5.18 30.77 0.16 -1.08 16 5 C -0.03 -0.34 6.31 29.96 0.19 -0.15 16 6 C -0.02 -0.50 7.38 24.99 0.18 -0.31 16 7 O 0.14 3.72 11.18 78.69 0.88 4.60 16 8 N -0.35 -12.00 11.89 -48.94 -0.58 -12.58 16 9 C -0.04 -1.46 7.19 42.55 0.31 -1.15 16 10 C 0.59 25.03 7.85 86.93 0.68 25.71 16 11 O -0.55 -26.10 15.78 -3.70 -0.06 -26.16 16 12 N -0.68 -27.52 4.62 -438.35 -2.03 -29.55 16 13 C 0.13 5.51 2.61 46.38 0.12 5.63 16 14 H 0.09 3.70 7.53 -2.39 -0.02 3.69 16 15 C 0.16 8.29 5.27 86.86 0.46 8.75 16 16 N -0.62 -32.77 3.39 -692.00 -2.35 -35.12 16 17 C -0.23 -13.56 10.27 84.03 0.86 -12.69 16 18 H 0.08 4.60 7.83 -2.91 -0.02 4.57 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 20 N -0.95 -60.26 10.09 21.65 0.22 -60.05 16 21 Si 0.98 47.80 29.55 68.60 2.03 49.82 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 25 C 0.14 5.66 6.41 86.73 0.56 6.22 16 26 C -0.07 -2.45 0.80 -50.99 -0.04 -2.49 16 27 C -0.12 -3.25 8.07 71.98 0.58 -2.67 16 28 C -0.12 -3.66 8.41 71.98 0.61 -3.06 16 29 C -0.17 -5.14 6.05 -20.05 -0.12 -5.26 16 30 C -0.04 -1.01 4.96 29.83 0.15 -0.86 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 0.56 8.11 -2.39 -0.02 0.54 16 35 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 36 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.41 15.65 6.80 -92.71 -0.63 15.02 16 39 H -0.01 -0.31 7.80 -2.39 -0.02 -0.33 16 40 H 0.07 4.22 5.87 -2.39 -0.01 4.20 16 41 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.03 1.11 7.76 -2.39 -0.02 1.09 16 43 H 0.03 1.28 7.84 -2.38 -0.02 1.26 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 1.31 6.41 -2.38 -0.02 1.29 16 47 H 0.04 1.32 7.57 -2.39 -0.02 1.30 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.07 2.03 7.84 -2.38 -0.02 2.01 16 51 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 Total: -1.00 -77.81 399.28 4.20 -73.61 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.30 Total: 25.14 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.79 Total: 10.30 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -4.74 Total: -137.30 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.82 Total: -21.56 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.82 kcal Total: -77.81 4.20 -73.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977413003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.235 kcal (2) G-P(sol) polarization free energy of solvation -77.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds