Wall clock time and date at job start Wed Apr 1 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46066 * 2 1 4 4 C 1.53105 * 109.46685 * 119.98889 * 2 1 3 5 5 C 1.53429 * 109.73051 * 189.86290 * 4 2 1 6 6 C 1.50596 * 108.31132 * 309.99349 * 5 4 2 7 7 O 1.33194 * 129.59968 * 196.78468 * 6 5 4 8 8 N 1.21436 * 111.57148 * 179.81354 * 7 6 5 9 9 C 1.31499 * 111.52251 * 0.03083 * 8 7 6 10 10 C 1.48326 * 127.15433 * 179.97438 * 9 8 7 11 11 O 1.21498 * 120.00353 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99815 * 0.03737 * 10 9 8 13 13 C 1.46504 * 119.99904 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.88589 * 34.29587 * 13 12 10 15 15 C 1.54909 * 111.00462 * 270.41314 * 13 12 10 16 16 N 1.47423 * 104.83351 * 278.90063 * 15 13 12 17 17 C 1.36936 * 125.64594 * 155.90840 * 16 15 13 18 18 H 1.08007 * 120.00033 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00281 * 359.97114 * 17 16 15 20 20 N 1.31616 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47513 * 119.99988 * 21 19 17 24 24 H 1.48502 * 109.47290 * 240.00176 * 21 19 17 25 25 C 1.47016 * 108.70440 * 335.86643 * 16 15 13 26 26 C 1.54383 * 107.28804 * 1.09781 * 25 16 15 27 27 C 1.52996 * 110.70268 * 263.79009 * 26 25 16 28 28 C 1.53000 * 110.75708 * 140.50279 * 26 25 16 29 29 C 1.35377 * 123.76865 * 16.94633 * 6 5 4 30 30 C 1.50064 * 124.93178 * 359.70561 * 29 6 5 31 31 H 1.08995 * 109.47378 * 300.00750 * 1 2 3 32 32 H 1.09000 * 109.47539 * 60.01523 * 1 2 3 33 33 H 1.09004 * 109.47013 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.42652 * 69.78367 * 4 2 1 35 35 H 1.09000 * 109.42795 * 309.94514 * 4 2 1 36 36 H 1.08998 * 109.69658 * 190.28470 * 5 4 2 37 37 H 1.09001 * 109.69323 * 69.69595 * 5 4 2 38 38 H 0.96994 * 120.00442 * 359.97438 * 12 10 9 39 39 H 1.09000 * 110.36449 * 37.73705 * 15 13 12 40 40 H 1.09002 * 110.36898 * 160.05636 * 15 13 12 41 41 H 0.96996 * 120.00056 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.88531 * 120.47268 * 25 16 15 43 43 H 1.08996 * 109.88671 * 241.49081 * 25 16 15 44 44 H 1.09000 * 109.47322 * 173.48481 * 27 26 25 45 45 H 1.08995 * 109.47541 * 293.48947 * 27 26 25 46 46 H 1.09003 * 109.47122 * 53.48885 * 27 26 25 47 47 H 1.09001 * 109.47041 * 306.48734 * 28 26 25 48 48 H 1.09005 * 109.47043 * 66.48228 * 28 26 25 49 49 H 1.08994 * 109.46599 * 186.48184 * 28 26 25 50 50 H 1.09002 * 109.92499 * 256.79954 * 30 29 6 51 51 H 1.09006 * 109.59441 * 136.15622 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0402 -0.7215 1.2503 5 6 3.5544 -0.5143 1.3862 6 6 4.1981 -0.8493 0.0666 7 8 5.4742 -1.1079 -0.2142 8 7 5.6328 -1.3428 -1.3950 9 6 4.4988 -1.2737 -2.0572 10 6 4.2944 -1.4964 -3.5093 11 8 3.1822 -1.3981 -3.9884 12 7 5.3424 -1.8081 -4.2973 13 6 5.1404 -2.0287 -5.7315 14 1 4.3562 -1.3778 -6.1181 15 6 4.8226 -3.5161 -6.0252 16 7 6.1349 -4.1877 -6.0347 17 6 6.3525 -5.5177 -5.7918 18 1 7.3563 -5.9151 -5.8227 19 6 5.2831 -6.3551 -5.5056 20 7 4.0598 -5.8709 -5.4683 21 14 5.5801 -8.1691 -5.1735 22 1 7.0329 -8.4597 -5.2757 23 1 5.1019 -8.5074 -3.8090 24 1 4.8417 -8.9827 -6.1726 25 6 7.1712 -3.1934 -6.3491 26 6 6.4642 -1.8312 -6.5164 27 6 6.1809 -1.5466 -7.9927 28 6 7.2982 -0.7077 -5.8973 29 6 3.5190 -0.9372 -1.1012 30 6 2.0415 -0.7233 -1.2541 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5136 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8261 -1.7870 1.1667 35 1 1.5388 -0.3197 2.1307 36 1 3.9466 -1.1703 2.1633 37 1 3.7614 0.5246 1.6427 38 1 6.2304 -1.8864 -3.9150 39 1 4.1899 -3.9309 -5.2405 40 1 4.3383 -3.6159 -6.9966 41 1 3.3125 -6.4560 -5.2679 42 1 7.8919 -3.1383 -5.5332 43 1 7.6788 -3.4666 -7.2741 44 1 5.5816 -0.6402 -8.0796 45 1 7.1229 -1.4115 -8.5241 46 1 5.6361 -2.3852 -8.4264 47 1 7.5359 -0.9591 -4.8637 48 1 8.2218 -0.5866 -6.4634 49 1 6.7310 0.2226 -5.9239 50 1 1.5359 -1.6835 -1.3568 51 1 1.8501 -0.1111 -2.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977413010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:56 Heat of formation + Delta-G solvation = 35.725057 kcal Electronic energy + Delta-G solvation = -32115.092926 eV Core-core repulsion = 28017.795301 eV Total energy + Delta-G solvation = -4097.297625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.01162 -39.67947 -38.37392 -37.79697 -33.93507 -33.75471 -33.00879 -32.53807 -30.69591 -30.37905 -28.24955 -27.32897 -26.82726 -25.61006 -24.57905 -23.81844 -22.89538 -22.05253 -20.64896 -20.02362 -19.35228 -18.68690 -17.74400 -17.42682 -16.73619 -16.35993 -15.79988 -15.24729 -14.75080 -14.52974 -14.32683 -14.09625 -13.99156 -13.78069 -13.73676 -13.46525 -13.33842 -13.16854 -12.85873 -12.68679 -12.31008 -12.18656 -11.96603 -11.91049 -11.75441 -11.41753 -11.29672 -11.17286 -11.15651 -11.00547 -10.87964 -10.78220 -10.67113 -10.42193 -10.19141 -10.10427 -9.97517 -9.82373 -9.71347 -9.67870 -9.09451 -8.68194 -8.39991 -6.79947 -5.61990 -3.04599 1.25061 1.76934 2.87987 3.33597 3.40808 3.45948 3.48700 3.57705 4.13577 4.40966 4.47121 4.50133 4.53937 4.83261 4.89491 4.97377 5.06200 5.12962 5.21275 5.24758 5.30240 5.42144 5.48457 5.53593 5.54201 5.59794 5.60658 5.63808 5.71748 5.79212 5.79699 5.88789 5.89538 6.03253 6.03567 6.10088 6.16975 6.18567 6.25616 6.28091 6.39538 6.49968 6.60305 6.69588 6.73285 6.96611 7.46647 7.63960 7.82169 7.92119 8.14679 8.39395 8.55286 9.23350 9.84956 10.48867 11.41119 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003491 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.026308 B = 8018.332244 C = 9178.109104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.115 4.115 5 C -0.032 4.032 6 C -0.047 4.047 7 O 0.124 5.876 8 N -0.337 5.337 9 C -0.006 4.006 10 C 0.597 3.403 11 O -0.524 6.524 12 N -0.684 5.684 13 C 0.122 3.878 14 H 0.089 0.911 15 C 0.147 3.853 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.142 3.858 26 C -0.087 4.087 27 C -0.128 4.128 28 C -0.132 4.132 29 C -0.150 4.150 30 C -0.039 4.039 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.402 0.598 39 H 0.113 0.887 40 H 0.023 0.977 41 H 0.251 0.749 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.085 0.915 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 15.840 11.763 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.070 4.070 6 C -0.111 4.111 7 O 0.051 5.949 8 N -0.039 5.039 9 C -0.165 4.165 10 C 0.380 3.620 11 O -0.399 6.399 12 N -0.333 5.333 13 C 0.017 3.983 14 H 0.107 0.893 15 C 0.021 3.979 16 N -0.327 5.327 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.217 1.217 25 C 0.016 3.984 26 C -0.088 4.088 27 C -0.185 4.185 28 C -0.190 4.190 29 C -0.155 4.155 30 C -0.077 4.077 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.130 0.870 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.982 15.415 11.005 19.043 hybrid contribution 0.024 -1.071 0.262 1.102 sum -1.957 14.344 11.267 18.345 Atomic orbital electron populations 1.21803 0.94341 1.02304 1.01904 1.21311 0.96195 0.99696 0.94130 0.90745 1.21734 0.92954 1.02032 0.98528 1.20214 0.94427 1.02927 0.89437 1.24080 0.83753 1.04444 0.98841 1.84670 1.26874 1.62941 1.20397 1.74571 1.22805 1.16613 0.89959 1.23181 0.90000 1.05838 0.97477 1.16742 0.85114 0.77723 0.82466 1.90763 1.23344 1.52152 1.73663 1.45676 1.10301 1.68273 1.09092 1.22630 0.96462 1.01107 0.78059 0.89257 1.22311 0.88966 0.85290 1.01330 1.44460 1.01435 1.04488 1.82320 1.19085 0.93383 0.82429 1.40257 0.90488 1.24785 0.95285 0.98257 1.02189 1.69806 0.97893 1.33373 1.55538 0.86038 0.77269 0.84912 0.77514 1.20549 1.21852 1.21739 1.21431 0.92043 0.87502 0.97414 1.21852 0.95363 0.95852 0.95701 1.21683 1.01302 1.01519 0.94027 1.21727 0.99360 0.97611 1.00264 1.20639 0.98621 1.05527 0.90673 1.20061 0.87295 1.01942 0.98383 0.92535 0.92229 0.92298 0.90888 0.90129 0.88949 0.88923 0.76195 0.86952 0.95899 0.93771 0.96056 0.95686 0.93029 0.92614 0.91674 0.92908 0.92575 0.92836 0.89621 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.16 37.16 0.34 -0.75 16 2 C -0.09 -0.82 2.70 -90.28 -0.24 -1.06 16 3 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 4 C -0.11 -0.83 5.18 -26.45 -0.14 -0.96 16 5 C -0.03 -0.24 6.31 -27.71 -0.17 -0.42 16 6 C -0.05 -0.57 7.38 -35.38 -0.26 -0.83 16 7 O 0.12 1.76 11.18 19.18 0.21 1.98 16 8 N -0.34 -5.66 11.89 33.29 0.40 -5.27 16 9 C -0.01 -0.11 7.19 -82.82 -0.60 -0.71 16 10 C 0.60 11.93 7.85 -12.11 -0.10 11.83 16 11 O -0.52 -11.49 15.78 5.37 0.08 -11.40 16 12 N -0.68 -13.31 4.62 -52.51 -0.24 -13.55 16 13 C 0.12 2.45 2.61 -65.78 -0.17 2.28 16 14 H 0.09 1.78 7.53 -51.93 -0.39 1.38 16 15 C 0.15 3.67 5.27 -2.53 -0.01 3.66 16 16 N -0.60 -15.41 3.39 -170.04 -0.58 -15.99 16 17 C -0.22 -6.30 10.27 -15.06 -0.15 -6.46 16 18 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.60 10.09 55.49 0.56 -27.04 16 21 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C 0.14 2.95 6.41 -3.04 -0.02 2.93 16 26 C -0.09 -1.49 0.81 -152.64 -0.12 -1.62 16 27 C -0.13 -1.97 8.41 37.16 0.31 -1.65 16 28 C -0.13 -1.88 8.08 37.16 0.30 -1.58 16 29 C -0.15 -2.19 6.04 -104.91 -0.63 -2.82 16 30 C -0.04 -0.49 4.97 -27.91 -0.14 -0.63 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 7.57 6.80 -40.82 -0.28 7.29 16 39 H 0.11 3.29 5.88 -51.93 -0.31 2.98 16 40 H 0.02 0.61 7.81 -51.93 -0.41 0.21 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.02 0.44 7.77 -51.93 -0.40 0.04 16 43 H 0.03 0.52 7.85 -51.93 -0.41 0.11 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.13 7.58 -51.93 -0.39 0.73 16 47 H 0.05 0.77 6.42 -51.93 -0.33 0.43 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 51 H 0.09 1.22 7.84 -51.93 -0.41 0.81 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -32.82 399.30 -8.84 -41.66 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.36 Total: 5.13 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.90 Total: 0.83 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.14 Total: -61.84 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.30 Total: -9.42 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.82 -8.84 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977413010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.382 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds