Wall clock time and date at job start Wed Apr 1 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46066 * 2 1 4 4 C 1.53105 * 109.46685 * 119.98889 * 2 1 3 5 5 C 1.53429 * 109.73051 * 189.86290 * 4 2 1 6 6 C 1.50596 * 108.31132 * 309.99349 * 5 4 2 7 7 O 1.33194 * 129.59968 * 196.78468 * 6 5 4 8 8 N 1.21436 * 111.57148 * 179.81354 * 7 6 5 9 9 C 1.31499 * 111.52251 * 0.03083 * 8 7 6 10 10 C 1.48326 * 127.15433 * 179.97438 * 9 8 7 11 11 O 1.21498 * 120.00353 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99815 * 0.03737 * 10 9 8 13 13 C 1.46504 * 119.99904 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.88589 * 34.29587 * 13 12 10 15 15 C 1.54909 * 111.00462 * 270.41314 * 13 12 10 16 16 N 1.47423 * 104.83351 * 278.90063 * 15 13 12 17 17 C 1.36936 * 125.64594 * 155.90840 * 16 15 13 18 18 H 1.08007 * 120.00033 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00281 * 359.97114 * 17 16 15 20 20 N 1.31616 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47513 * 119.99988 * 21 19 17 24 24 H 1.48502 * 109.47290 * 240.00176 * 21 19 17 25 25 C 1.47016 * 108.70440 * 335.86643 * 16 15 13 26 26 C 1.54383 * 107.28804 * 1.09781 * 25 16 15 27 27 C 1.52996 * 110.70268 * 263.79009 * 26 25 16 28 28 C 1.53000 * 110.75708 * 140.50279 * 26 25 16 29 29 C 1.35377 * 123.76865 * 16.94633 * 6 5 4 30 30 C 1.50064 * 124.93178 * 359.70561 * 29 6 5 31 31 H 1.08995 * 109.47378 * 300.00750 * 1 2 3 32 32 H 1.09000 * 109.47539 * 60.01523 * 1 2 3 33 33 H 1.09004 * 109.47013 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.42652 * 69.78367 * 4 2 1 35 35 H 1.09000 * 109.42795 * 309.94514 * 4 2 1 36 36 H 1.08998 * 109.69658 * 190.28470 * 5 4 2 37 37 H 1.09001 * 109.69323 * 69.69595 * 5 4 2 38 38 H 0.96994 * 120.00442 * 359.97438 * 12 10 9 39 39 H 1.09000 * 110.36449 * 37.73705 * 15 13 12 40 40 H 1.09002 * 110.36898 * 160.05636 * 15 13 12 41 41 H 0.96996 * 120.00056 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.88531 * 120.47268 * 25 16 15 43 43 H 1.08996 * 109.88671 * 241.49081 * 25 16 15 44 44 H 1.09000 * 109.47322 * 173.48481 * 27 26 25 45 45 H 1.08995 * 109.47541 * 293.48947 * 27 26 25 46 46 H 1.09003 * 109.47122 * 53.48885 * 27 26 25 47 47 H 1.09001 * 109.47041 * 306.48734 * 28 26 25 48 48 H 1.09005 * 109.47043 * 66.48228 * 28 26 25 49 49 H 1.08994 * 109.46599 * 186.48184 * 28 26 25 50 50 H 1.09002 * 109.92499 * 256.79954 * 30 29 6 51 51 H 1.09006 * 109.59441 * 136.15622 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0402 -0.7215 1.2503 5 6 3.5544 -0.5143 1.3862 6 6 4.1981 -0.8493 0.0666 7 8 5.4742 -1.1079 -0.2142 8 7 5.6328 -1.3428 -1.3950 9 6 4.4988 -1.2737 -2.0572 10 6 4.2944 -1.4964 -3.5093 11 8 3.1822 -1.3981 -3.9884 12 7 5.3424 -1.8081 -4.2973 13 6 5.1404 -2.0287 -5.7315 14 1 4.3562 -1.3778 -6.1181 15 6 4.8226 -3.5161 -6.0252 16 7 6.1349 -4.1877 -6.0347 17 6 6.3525 -5.5177 -5.7918 18 1 7.3563 -5.9151 -5.8227 19 6 5.2831 -6.3551 -5.5056 20 7 4.0598 -5.8709 -5.4683 21 14 5.5801 -8.1691 -5.1735 22 1 7.0329 -8.4597 -5.2757 23 1 5.1019 -8.5074 -3.8090 24 1 4.8417 -8.9827 -6.1726 25 6 7.1712 -3.1934 -6.3491 26 6 6.4642 -1.8312 -6.5164 27 6 6.1809 -1.5466 -7.9927 28 6 7.2982 -0.7077 -5.8973 29 6 3.5190 -0.9372 -1.1012 30 6 2.0415 -0.7233 -1.2541 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5136 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8261 -1.7870 1.1667 35 1 1.5388 -0.3197 2.1307 36 1 3.9466 -1.1703 2.1633 37 1 3.7614 0.5246 1.6427 38 1 6.2304 -1.8864 -3.9150 39 1 4.1899 -3.9309 -5.2405 40 1 4.3383 -3.6159 -6.9966 41 1 3.3125 -6.4560 -5.2679 42 1 7.8919 -3.1383 -5.5332 43 1 7.6788 -3.4666 -7.2741 44 1 5.5816 -0.6402 -8.0796 45 1 7.1229 -1.4115 -8.5241 46 1 5.6361 -2.3852 -8.4264 47 1 7.5359 -0.9591 -4.8637 48 1 8.2218 -0.5866 -6.4634 49 1 6.7310 0.2226 -5.9239 50 1 1.5359 -1.6835 -1.3568 51 1 1.8501 -0.1111 -2.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977413010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:55 Heat of formation + Delta-G solvation = 15.593698 kcal Electronic energy + Delta-G solvation = -32115.965888 eV Core-core repulsion = 28017.795301 eV Total energy + Delta-G solvation = -4098.170587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.22235 -41.30570 -39.59824 -39.01951 -35.77456 -35.14412 -34.48919 -33.38959 -32.67056 -31.32041 -29.99414 -28.34910 -28.02030 -27.49647 -26.04938 -24.81077 -24.32790 -23.04607 -22.33577 -21.50809 -20.57050 -20.04220 -18.96303 -18.77819 -18.61281 -17.72704 -17.45193 -16.69204 -16.15217 -15.99085 -15.70054 -15.50465 -15.31729 -15.16731 -14.78731 -14.70319 -14.37223 -14.26102 -14.16619 -13.82747 -13.73421 -13.73277 -13.10511 -13.07596 -13.05895 -12.92229 -12.71094 -12.68916 -12.65439 -12.28327 -12.11091 -11.92007 -11.86155 -11.84963 -11.65580 -11.57484 -11.50400 -11.44226 -11.27742 -11.20748 -10.83030 -10.14405 -10.11707 -8.90886 -7.81066 -5.26210 -0.00103 0.61297 1.40015 1.41292 1.51712 1.76727 1.95441 2.08891 2.44155 2.84402 3.28832 3.45013 3.49594 3.58334 3.62044 3.85920 3.89147 3.93197 3.99395 4.04499 4.21126 4.24847 4.32866 4.43047 4.46143 4.54413 4.63714 4.73825 4.77046 4.77647 4.80198 4.85012 4.86944 4.95042 4.97474 5.02537 5.03380 5.12920 5.13206 5.18259 5.19629 5.25882 5.32176 5.40347 5.41461 5.46282 5.52574 5.56192 5.75070 6.24717 6.30460 6.89456 7.02192 7.04108 7.73263 8.36961 9.20073 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003491 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.026308 B = 8018.332244 C = 9178.109104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.086 0.914 4 C -0.113 4.113 5 C -0.031 4.031 6 C -0.022 4.022 7 O 0.136 5.864 8 N -0.354 5.354 9 C -0.040 4.040 10 C 0.591 3.409 11 O -0.554 6.554 12 N -0.680 5.680 13 C 0.133 3.867 14 H 0.089 0.911 15 C 0.156 3.844 16 N -0.619 5.619 17 C -0.234 4.234 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.978 3.022 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.291 1.291 25 C 0.137 3.863 26 C -0.072 4.072 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.173 4.173 30 C -0.039 4.039 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.406 0.594 39 H 0.067 0.933 40 H -0.005 1.005 41 H 0.243 0.757 42 H 0.027 0.973 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 17.726 14.096 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.104 0.896 4 C -0.150 4.150 5 C -0.068 4.068 6 C -0.087 4.087 7 O 0.061 5.939 8 N -0.056 5.056 9 C -0.196 4.196 10 C 0.376 3.624 11 O -0.431 6.431 12 N -0.330 5.330 13 C 0.027 3.973 14 H 0.107 0.893 15 C 0.029 3.971 16 N -0.345 5.345 17 C -0.363 4.363 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.218 1.218 25 C 0.012 3.988 26 C -0.073 4.073 27 C -0.182 4.182 28 C -0.182 4.182 29 C -0.179 4.179 30 C -0.076 4.076 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.243 0.757 39 H 0.085 0.915 40 H 0.012 0.988 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.520 17.317 13.311 21.848 hybrid contribution -0.410 -1.652 -0.425 1.755 sum -0.930 15.665 12.886 20.305 Atomic orbital electron populations 1.21800 0.93525 1.02138 1.02733 1.21305 0.96831 0.99788 0.92709 0.89590 1.21786 0.92973 1.01357 0.98876 1.20622 0.93928 1.05319 0.86971 1.24978 0.82293 1.01306 1.00075 1.84633 1.28052 1.61967 1.19231 1.74539 1.22747 1.17366 0.90907 1.23050 0.91718 1.08225 0.96626 1.17152 0.84670 0.76906 0.83691 1.90729 1.24353 1.53432 1.74629 1.45631 1.10441 1.68073 1.08830 1.22378 0.98457 0.97387 0.79051 0.89263 1.21938 0.88380 0.88542 0.98198 1.44688 1.02755 1.04707 1.82305 1.19488 0.93619 0.83915 1.39303 0.89862 1.25644 0.95111 1.02558 1.02766 1.70113 0.98570 1.34354 1.56873 0.85007 0.77905 0.79762 0.76678 1.18691 1.22307 1.21841 1.21660 0.91343 0.88188 0.97591 1.21848 0.93438 0.95253 0.96802 1.21682 1.02738 1.01328 0.92446 1.21687 0.99993 0.96490 1.00036 1.20944 0.99321 1.06620 0.90970 1.20081 0.86385 1.01085 1.00080 0.90038 0.93059 0.93000 0.92079 0.86510 0.86443 0.85694 0.75747 0.91498 0.98760 0.94696 0.95473 0.95031 0.90970 0.89918 0.94384 0.93375 0.89921 0.91451 0.91658 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.16 71.98 0.66 -1.29 16 2 C -0.09 -1.37 2.70 -10.57 -0.03 -1.39 16 3 H 0.09 1.17 8.12 -2.38 -0.02 1.15 16 4 C -0.11 -1.24 5.18 30.77 0.16 -1.08 16 5 C -0.03 -0.34 6.31 29.96 0.19 -0.15 16 6 C -0.02 -0.49 7.38 24.99 0.18 -0.31 16 7 O 0.14 3.72 11.18 78.65 0.88 4.60 16 8 N -0.35 -12.00 11.89 -48.94 -0.58 -12.58 16 9 C -0.04 -1.46 7.19 42.55 0.31 -1.15 16 10 C 0.59 25.03 7.85 86.93 0.68 25.71 16 11 O -0.55 -26.11 15.78 -3.71 -0.06 -26.16 16 12 N -0.68 -27.52 4.62 -438.35 -2.03 -29.55 16 13 C 0.13 5.51 2.61 46.38 0.12 5.63 16 14 H 0.09 3.70 7.53 -2.39 -0.02 3.69 16 15 C 0.16 8.29 5.27 86.86 0.46 8.75 16 16 N -0.62 -32.78 3.39 -691.89 -2.35 -35.13 16 17 C -0.23 -13.56 10.27 84.03 0.86 -12.70 16 18 H 0.08 4.60 7.83 -2.91 -0.02 4.57 16 19 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 20 N -0.95 -60.26 10.09 21.65 0.22 -60.04 16 21 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 C 0.14 5.66 6.41 86.75 0.56 6.22 16 26 C -0.07 -2.44 0.81 -50.97 -0.04 -2.48 16 27 C -0.12 -3.66 8.41 71.98 0.61 -3.06 16 28 C -0.12 -3.25 8.08 71.98 0.58 -2.67 16 29 C -0.17 -5.13 6.04 -20.05 -0.12 -5.25 16 30 C -0.04 -1.01 4.97 29.83 0.15 -0.86 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 35 H 0.12 0.56 8.11 -2.39 -0.02 0.54 16 36 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.41 15.65 6.80 -92.71 -0.63 15.02 16 39 H 0.07 4.21 5.88 -2.39 -0.01 4.20 16 40 H -0.01 -0.31 7.81 -2.39 -0.02 -0.33 16 41 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.03 1.10 7.77 -2.39 -0.02 1.08 16 43 H 0.03 1.28 7.85 -2.39 -0.02 1.26 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.32 7.58 -2.39 -0.02 1.30 16 47 H 0.05 1.31 6.42 -2.39 -0.02 1.29 16 48 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 49 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.07 1.91 8.12 -2.39 -0.02 1.90 16 51 H 0.07 2.02 7.84 -2.38 -0.02 2.00 16 Total: -1.00 -77.80 399.30 4.20 -73.59 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.30 Total: 25.14 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.79 Total: 10.31 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -4.74 Total: -137.30 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.82 Total: -21.57 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -77.80 4.20 -73.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977413010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.186 kcal (2) G-P(sol) polarization free energy of solvation -77.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds