Wall clock time and date at job start Wed Apr 1 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47354 * 2 1 4 4 O 1.42900 * 109.47368 * 120.00469 * 2 1 3 5 5 C 1.35667 * 117.00397 * 89.99862 * 4 2 1 6 6 C 1.39284 * 119.61727 * 180.02562 * 5 4 2 7 7 C 1.38331 * 119.30295 * 180.02562 * 6 5 4 8 8 C 1.38783 * 118.56109 * 359.97438 * 7 6 5 9 9 C 1.39132 * 119.18854 * 0.02562 * 8 7 6 10 10 C 1.48146 * 119.69140 * 179.97438 * 9 8 7 11 11 O 1.21523 * 120.00021 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00016 * 179.72013 * 10 9 8 13 13 C 1.46504 * 119.99858 * 180.27150 * 12 10 9 14 14 H 1.08999 * 109.47126 * 325.00435 * 13 12 10 15 15 C 1.52998 * 109.46934 * 85.00674 * 13 12 10 16 16 C 1.53000 * 109.47266 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47001 * 300.00042 * 16 15 13 18 18 C 1.53000 * 109.47345 * 59.99561 * 17 16 15 19 19 H 1.08998 * 109.46925 * 60.00566 * 18 17 16 20 20 N 1.46506 * 109.47096 * 180.02562 * 18 17 16 21 21 C 1.36926 * 119.99887 * 275.00432 * 20 18 17 22 22 H 1.08003 * 120.00439 * 359.97438 * 21 20 18 23 23 C 1.38819 * 120.00143 * 180.02562 * 21 20 18 24 24 N 1.31611 * 120.00129 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99684 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46884 * 90.00077 * 25 23 21 27 27 H 1.48491 * 109.47131 * 209.99996 * 25 23 21 28 28 H 1.48501 * 109.47161 * 330.00316 * 25 23 21 29 29 C 1.53000 * 109.47057 * 300.00142 * 18 17 16 30 30 N 1.31902 * 119.61617 * 0.27394 * 5 4 2 31 31 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46866 * 299.99554 * 1 2 3 33 33 H 1.09000 * 109.47179 * 59.99619 * 1 2 3 34 34 H 1.09008 * 109.47278 * 240.00161 * 2 1 3 35 35 H 1.08996 * 109.47592 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47023 * 300.00795 * 3 2 1 37 37 H 1.09002 * 109.46418 * 60.00064 * 3 2 1 38 38 H 1.08000 * 120.34653 * 359.97438 * 6 5 4 39 39 H 1.08007 * 120.72085 * 179.97438 * 7 6 5 40 40 H 1.07999 * 120.40410 * 179.97438 * 8 7 6 41 41 H 0.97001 * 119.99727 * 0.28049 * 12 10 9 42 42 H 1.09008 * 109.46553 * 299.99680 * 15 13 12 43 43 H 1.08998 * 109.47289 * 59.99394 * 15 13 12 44 44 H 1.08993 * 109.47213 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.46883 * 59.99707 * 16 15 13 46 46 H 1.08998 * 109.46647 * 299.99956 * 17 16 15 47 47 H 1.08998 * 109.46904 * 180.02562 * 17 16 15 48 48 H 0.96995 * 119.99672 * 94.99912 * 20 18 17 49 49 H 0.97000 * 120.00147 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.47097 * 299.99851 * 29 18 17 51 51 H 1.09002 * 109.46883 * 179.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2117 -2.0109 1.0652 6 6 2.6750 -2.7220 2.1696 7 6 2.8826 -4.0851 2.0586 8 6 2.6194 -4.6996 0.8424 9 6 2.1582 -3.9299 -0.2209 10 6 1.8742 -4.5742 -1.5243 11 8 2.0447 -5.7696 -1.6611 12 7 1.4219 -3.8355 -2.5569 13 6 1.1354 -4.4738 -3.8441 14 1 1.8504 -5.2779 -4.0180 15 6 -0.2827 -5.0476 -3.8243 16 6 -0.5823 -5.7137 -5.1687 17 6 -0.4671 -4.6771 -6.2882 18 6 0.9510 -4.1031 -6.3080 19 1 1.6659 -4.9072 -6.4825 20 7 1.0610 -3.1102 -7.3796 21 6 1.3463 -3.5107 -8.6575 22 1 1.4906 -4.5586 -8.8755 23 6 1.4511 -2.5699 -9.6728 24 7 1.7258 -2.9548 -10.9010 25 14 1.2022 -0.7573 -9.2957 26 1 2.5047 -0.1441 -8.9314 27 1 0.6510 -0.0737 -10.4931 28 1 0.2531 -0.6132 -8.1626 29 6 1.2504 -3.4371 -4.9635 30 7 1.9749 -2.6217 -0.0797 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9562 0.8900 38 1 2.8709 -2.2143 3.1024 39 1 3.2418 -4.6588 2.9003 40 1 2.7715 -5.7621 0.7226 41 1 1.2862 -2.8813 -2.4478 42 1 -0.3648 -5.7858 -3.0264 43 1 -0.9977 -4.2435 -3.6502 44 1 -1.5924 -6.1229 -5.1545 45 1 0.1327 -6.5177 -5.3431 46 1 -1.1821 -3.8731 -6.1137 47 1 -0.6810 -5.1515 -7.2460 48 1 0.9317 -2.1690 -7.1837 49 1 1.7993 -2.2974 -11.6103 50 1 0.5355 -2.6331 -4.7891 51 1 2.2609 -3.0286 -4.9775 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981425743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:09 Heat of formation + Delta-G solvation = -40.472687 kcal Electronic energy + Delta-G solvation = -30781.084747 eV Core-core repulsion = 26680.482939 eV Total energy + Delta-G solvation = -4100.601807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25949 -39.93326 -38.61856 -37.79487 -34.87321 -33.72910 -33.51251 -32.82214 -31.34767 -30.72639 -29.43572 -28.21666 -27.62717 -25.28070 -23.94661 -23.45931 -22.19875 -21.61811 -21.42683 -20.40719 -19.77290 -18.87796 -17.94340 -17.39811 -16.46544 -16.39148 -16.13921 -15.90952 -15.21643 -14.96412 -14.74980 -14.54067 -14.38687 -14.04608 -13.82848 -13.78941 -13.59739 -13.33074 -13.23552 -12.74083 -12.68052 -12.65513 -12.49242 -12.31795 -12.24485 -12.22572 -11.32557 -11.27691 -11.16784 -11.05856 -10.97679 -10.87813 -10.66688 -10.43230 -10.38658 -10.30302 -10.13883 -10.01144 -9.70601 -9.58523 -9.10393 -8.91365 -8.87180 -7.27699 -5.77009 -3.12628 0.29843 0.85881 2.53921 2.58180 2.92554 3.36151 3.38573 3.44279 3.53020 3.68593 4.42581 4.50334 4.56803 4.58373 4.60106 4.61297 4.80050 4.83392 4.86864 4.99367 5.07744 5.20389 5.25100 5.36663 5.41021 5.43448 5.46309 5.50369 5.52201 5.59218 5.61642 5.72166 5.74814 5.77924 5.80603 5.82015 5.92661 5.97195 6.06003 6.20228 6.22144 6.36528 6.46267 6.51327 6.63901 6.83891 6.88316 7.02658 7.19123 7.49496 7.99635 8.05274 8.42065 9.20412 9.92839 10.12598 11.41403 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002749 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.446139 B =10182.940157 C =11955.787120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 C -0.151 4.151 4 O -0.301 6.301 5 C 0.325 3.675 6 C -0.171 4.171 7 C -0.047 4.047 8 C -0.150 4.150 9 C 0.123 3.877 10 C 0.569 3.431 11 O -0.529 6.529 12 N -0.702 5.702 13 C 0.147 3.853 14 H 0.092 0.908 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.189 3.811 19 H 0.058 0.942 20 N -0.748 5.748 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.884 3.116 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 C -0.133 4.133 30 N -0.518 5.518 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.407 0.593 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.064 0.936 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 2.944 30.058 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 C -0.208 4.208 4 O -0.208 6.208 5 C 0.144 3.856 6 C -0.191 4.191 7 C -0.072 4.072 8 C -0.172 4.172 9 C -0.014 4.014 10 C 0.353 3.647 11 O -0.405 6.405 12 N -0.352 5.352 13 C 0.043 3.957 14 H 0.110 0.890 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.079 3.921 19 H 0.076 0.924 20 N -0.390 5.390 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.172 4.172 30 N -0.245 5.245 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.164 0.836 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.243 0.757 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.108 2.633 29.180 29.320 hybrid contribution -0.097 1.466 0.716 1.635 sum -1.205 4.099 29.896 30.200 Atomic orbital electron populations 1.22232 0.94643 1.02973 1.02877 1.22405 0.94521 0.92927 0.87721 1.21916 1.02060 0.93693 1.03167 1.86310 1.80074 1.15498 1.38928 1.19719 0.91684 0.84898 0.89316 1.21304 1.04376 0.94452 0.99016 1.21462 0.94761 0.93411 0.97572 1.22007 1.00223 1.02444 0.92492 1.20866 0.97424 0.88177 0.94943 1.17853 0.77599 0.86249 0.83011 1.90804 1.52851 1.14026 1.82812 1.46016 1.65137 1.12567 1.11456 1.21103 0.97400 0.96128 0.81089 0.88997 1.21894 0.95890 1.00174 0.98325 1.21478 1.01127 0.98615 0.94073 1.22256 0.99714 0.97823 0.97943 1.20070 0.94500 0.91921 0.85652 0.92383 1.42763 1.86423 1.04091 1.05736 1.19079 1.39960 0.95052 0.83039 0.89128 1.24673 1.01831 0.97379 0.95319 1.69696 1.55515 1.33048 0.99943 0.86556 0.77891 0.87025 0.77079 1.21144 1.21807 1.20368 1.22133 1.02345 0.97874 0.94855 1.67091 1.20827 1.11294 1.25268 0.91983 0.91968 0.90740 0.89154 0.91755 0.90202 0.91649 0.83649 0.83300 0.83091 0.75727 0.91995 0.92052 0.92296 0.91897 0.92786 0.91360 0.80742 0.93079 0.91773 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.53 37.16 0.35 -0.94 16 2 C 0.08 0.67 3.11 -26.73 -0.08 0.58 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 4 O -0.30 -2.86 9.76 -18.70 -0.18 -3.04 16 5 C 0.33 3.18 7.46 -17.13 -0.13 3.05 16 6 C -0.17 -1.29 10.05 -39.16 -0.39 -1.69 16 7 C -0.05 -0.32 10.16 -39.35 -0.40 -0.72 16 8 C -0.15 -1.39 9.63 -39.05 -0.38 -1.77 16 9 C 0.12 1.39 6.75 -83.03 -0.56 0.83 16 10 C 0.57 7.54 7.78 -12.19 -0.09 7.45 16 11 O -0.53 -8.37 15.98 5.35 0.09 -8.29 16 12 N -0.70 -8.65 5.07 -54.65 -0.28 -8.93 16 13 C 0.15 2.00 2.46 -67.93 -0.17 1.83 16 14 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 15 C -0.12 -1.62 5.49 -26.73 -0.15 -1.77 16 16 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 17 C -0.14 -2.31 5.50 -26.73 -0.15 -2.46 16 18 C 0.19 3.49 2.77 -67.93 -0.19 3.30 16 19 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 20 N -0.75 -17.24 4.92 -53.42 -0.26 -17.50 16 21 C -0.24 -6.71 10.41 -15.06 -0.16 -6.86 16 22 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 24 N -0.93 -29.24 13.97 55.49 0.78 -28.46 16 25 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 29 C -0.13 -1.99 4.86 -26.73 -0.13 -2.12 16 30 N -0.52 -5.54 7.82 -9.88 -0.08 -5.61 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.82 6.98 -51.92 -0.36 0.46 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.15 1.33 7.63 -52.49 -0.40 0.93 16 41 H 0.41 4.48 7.93 -40.82 -0.32 4.16 16 42 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 49 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 413.24 15.07 6.23 6.23 Total: -1.00 -32.74 413.24 -9.43 -42.17 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.49 Total: 9.92 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.52 Total: -3.65 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.16 Total: -60.50 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.10 Total: -11.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.74 -9.43 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981425743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.697 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds