Wall clock time and date at job start Wed Apr 1 2020 04:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47354 * 2 1 4 4 O 1.42900 * 109.47368 * 120.00469 * 2 1 3 5 5 C 1.35667 * 117.00397 * 89.99862 * 4 2 1 6 6 C 1.39284 * 119.61727 * 180.02562 * 5 4 2 7 7 C 1.38331 * 119.30295 * 180.02562 * 6 5 4 8 8 C 1.38783 * 118.56109 * 359.97438 * 7 6 5 9 9 C 1.39132 * 119.18854 * 0.02562 * 8 7 6 10 10 C 1.48146 * 119.69140 * 179.97438 * 9 8 7 11 11 O 1.21523 * 120.00021 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00016 * 179.72013 * 10 9 8 13 13 C 1.46504 * 119.99858 * 180.27150 * 12 10 9 14 14 H 1.08999 * 109.47126 * 325.00435 * 13 12 10 15 15 C 1.52998 * 109.46934 * 85.00674 * 13 12 10 16 16 C 1.53000 * 109.47266 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47001 * 300.00042 * 16 15 13 18 18 C 1.53000 * 109.47345 * 59.99561 * 17 16 15 19 19 H 1.08998 * 109.46925 * 60.00566 * 18 17 16 20 20 N 1.46506 * 109.47096 * 180.02562 * 18 17 16 21 21 C 1.36926 * 119.99887 * 275.00432 * 20 18 17 22 22 H 1.08003 * 120.00439 * 359.97438 * 21 20 18 23 23 C 1.38819 * 120.00143 * 180.02562 * 21 20 18 24 24 N 1.31611 * 120.00129 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99684 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46884 * 90.00077 * 25 23 21 27 27 H 1.48491 * 109.47131 * 209.99996 * 25 23 21 28 28 H 1.48501 * 109.47161 * 330.00316 * 25 23 21 29 29 C 1.53000 * 109.47057 * 300.00142 * 18 17 16 30 30 N 1.31902 * 119.61617 * 0.27394 * 5 4 2 31 31 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46866 * 299.99554 * 1 2 3 33 33 H 1.09000 * 109.47179 * 59.99619 * 1 2 3 34 34 H 1.09008 * 109.47278 * 240.00161 * 2 1 3 35 35 H 1.08996 * 109.47592 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47023 * 300.00795 * 3 2 1 37 37 H 1.09002 * 109.46418 * 60.00064 * 3 2 1 38 38 H 1.08000 * 120.34653 * 359.97438 * 6 5 4 39 39 H 1.08007 * 120.72085 * 179.97438 * 7 6 5 40 40 H 1.07999 * 120.40410 * 179.97438 * 8 7 6 41 41 H 0.97001 * 119.99727 * 0.28049 * 12 10 9 42 42 H 1.09008 * 109.46553 * 299.99680 * 15 13 12 43 43 H 1.08998 * 109.47289 * 59.99394 * 15 13 12 44 44 H 1.08993 * 109.47213 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.46883 * 59.99707 * 16 15 13 46 46 H 1.08998 * 109.46647 * 299.99956 * 17 16 15 47 47 H 1.08998 * 109.46904 * 180.02562 * 17 16 15 48 48 H 0.96995 * 119.99672 * 94.99912 * 20 18 17 49 49 H 0.97000 * 120.00147 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.47097 * 299.99851 * 29 18 17 51 51 H 1.09002 * 109.46883 * 179.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2117 -2.0109 1.0652 6 6 2.6750 -2.7220 2.1696 7 6 2.8826 -4.0851 2.0586 8 6 2.6194 -4.6996 0.8424 9 6 2.1582 -3.9299 -0.2209 10 6 1.8742 -4.5742 -1.5243 11 8 2.0447 -5.7696 -1.6611 12 7 1.4219 -3.8355 -2.5569 13 6 1.1354 -4.4738 -3.8441 14 1 1.8504 -5.2779 -4.0180 15 6 -0.2827 -5.0476 -3.8243 16 6 -0.5823 -5.7137 -5.1687 17 6 -0.4671 -4.6771 -6.2882 18 6 0.9510 -4.1031 -6.3080 19 1 1.6659 -4.9072 -6.4825 20 7 1.0610 -3.1102 -7.3796 21 6 1.3463 -3.5107 -8.6575 22 1 1.4906 -4.5586 -8.8755 23 6 1.4511 -2.5699 -9.6728 24 7 1.7258 -2.9548 -10.9010 25 14 1.2022 -0.7573 -9.2957 26 1 2.5047 -0.1441 -8.9314 27 1 0.6510 -0.0737 -10.4931 28 1 0.2531 -0.6132 -8.1626 29 6 1.2504 -3.4371 -4.9635 30 7 1.9749 -2.6217 -0.0797 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9562 0.8900 38 1 2.8709 -2.2143 3.1024 39 1 3.2418 -4.6588 2.9003 40 1 2.7715 -5.7621 0.7226 41 1 1.2862 -2.8813 -2.4478 42 1 -0.3648 -5.7858 -3.0264 43 1 -0.9977 -4.2435 -3.6502 44 1 -1.5924 -6.1229 -5.1545 45 1 0.1327 -6.5177 -5.3431 46 1 -1.1821 -3.8731 -6.1137 47 1 -0.6810 -5.1515 -7.2460 48 1 0.9317 -2.1690 -7.1837 49 1 1.7993 -2.2974 -11.6103 50 1 0.5355 -2.6331 -4.7891 51 1 2.2609 -3.0286 -4.9775 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981425743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:08 Heat of formation + Delta-G solvation = -62.677956 kcal Electronic energy + Delta-G solvation = -30782.047640 eV Core-core repulsion = 26680.482939 eV Total energy + Delta-G solvation = -4101.564700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00406 -40.91920 -39.58969 -38.81347 -36.39341 -34.97041 -34.25437 -33.64402 -33.22690 -31.49662 -30.70527 -29.69671 -28.16616 -26.09589 -25.39007 -24.58623 -23.36944 -22.78032 -22.17379 -21.53118 -21.11733 -19.94585 -19.35387 -18.59820 -17.52453 -17.03955 -16.85626 -16.77580 -16.50200 -16.26718 -15.97873 -15.46790 -15.39333 -15.20541 -15.14550 -14.91781 -14.69750 -14.52489 -14.32815 -14.01849 -13.75446 -13.52926 -13.27070 -13.18391 -13.10620 -13.04026 -12.89635 -12.85195 -12.37969 -12.23799 -12.06217 -11.91802 -11.82617 -11.80698 -11.70324 -11.67172 -11.46663 -11.27868 -11.01013 -10.92150 -10.63875 -10.15752 -9.59675 -9.30965 -8.00897 -5.34595 -0.42876 0.22628 1.38008 1.42367 1.49632 1.65083 1.91724 1.99952 2.49846 2.77008 2.90436 3.29943 3.43421 3.74706 3.81432 3.87662 3.95600 3.99652 4.01444 4.03096 4.12144 4.20970 4.25359 4.27931 4.35392 4.45098 4.49849 4.53675 4.62117 4.70018 4.72651 4.83600 4.84405 4.87831 4.95308 4.96610 5.06723 5.12008 5.13222 5.18333 5.21770 5.25918 5.33068 5.38511 5.39429 5.47820 5.59967 5.79104 6.14991 6.23008 6.35220 6.65325 7.06756 7.09257 7.84583 8.05044 9.20856 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002749 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.446139 B =10182.940157 C =11955.787120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 C -0.148 4.148 4 O -0.307 6.307 5 C 0.306 3.694 6 C -0.161 4.161 7 C -0.035 4.035 8 C -0.152 4.152 9 C 0.097 3.903 10 C 0.568 3.432 11 O -0.562 6.562 12 N -0.695 5.695 13 C 0.155 3.845 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.128 4.128 18 C 0.181 3.819 19 H 0.038 0.962 20 N -0.750 5.750 21 C -0.227 4.227 22 H 0.054 0.946 23 C -0.067 4.067 24 N -0.986 5.986 25 Si 0.957 3.043 26 H -0.279 1.279 27 H -0.298 1.298 28 H -0.248 1.248 29 C -0.119 4.119 30 N -0.527 5.527 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.172 0.828 39 H 0.189 0.811 40 H 0.152 0.848 41 H 0.415 0.585 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.366 0.634 49 H 0.257 0.743 50 H 0.083 0.917 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 4.728 33.739 34.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.214 6.214 5 C 0.125 3.875 6 C -0.182 4.182 7 C -0.059 4.059 8 C -0.174 4.174 9 C -0.039 4.039 10 C 0.354 3.646 11 O -0.440 6.440 12 N -0.344 5.344 13 C 0.050 3.950 14 H 0.092 0.908 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.168 4.168 18 C 0.073 3.927 19 H 0.056 0.944 20 N -0.393 5.393 21 C -0.358 4.358 22 H 0.072 0.928 23 C -0.259 4.259 24 N -0.637 5.637 25 Si 0.784 3.216 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.172 1.172 29 C -0.158 4.158 30 N -0.254 5.254 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.190 0.810 39 H 0.206 0.794 40 H 0.170 0.830 41 H 0.252 0.748 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.200 0.800 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.780 4.418 32.926 33.269 hybrid contribution 0.152 0.809 -0.354 0.896 sum -1.628 5.227 32.572 33.029 Atomic orbital electron populations 1.22190 0.94170 1.02241 1.03613 1.22513 0.94942 0.93545 0.87051 1.21912 1.01827 0.92733 1.03996 1.86308 1.80291 1.15469 1.39372 1.20083 0.92458 0.85165 0.89818 1.21712 1.02502 0.94733 0.99253 1.21878 0.93221 0.93284 0.97557 1.22190 0.99674 1.02530 0.92996 1.20633 0.99941 0.88785 0.94523 1.18184 0.76768 0.85918 0.83758 1.90779 1.54333 1.15393 1.83521 1.45872 1.64914 1.12891 1.10766 1.20872 0.97538 0.95211 0.81379 0.90843 1.21812 0.95549 1.00500 0.97520 1.21405 1.02194 0.97569 0.93324 1.22083 0.98316 0.98613 0.97810 1.20263 0.95163 0.90952 0.86324 0.94400 1.42730 1.86386 1.05225 1.04928 1.19002 1.38226 0.93452 0.85162 0.92846 1.25533 1.02562 1.02738 0.95018 1.69892 1.57836 1.34712 1.01279 0.85379 0.78505 0.80245 0.77462 1.20497 1.22513 1.17202 1.21931 1.02682 0.98260 0.92927 1.66960 1.21258 1.11007 1.26151 0.93372 0.91483 0.89741 0.90314 0.92099 0.89114 0.91069 0.81011 0.79394 0.83012 0.74791 0.91905 0.90593 0.90389 0.92444 0.91934 0.94178 0.80037 0.93424 0.89888 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.53 71.98 0.69 -1.55 16 2 C 0.08 1.14 3.11 30.59 0.10 1.24 16 3 C -0.15 -1.69 9.56 71.98 0.69 -1.00 16 4 O -0.31 -5.31 9.76 -89.84 -0.88 -6.19 16 5 C 0.31 5.45 7.46 84.93 0.63 6.08 16 6 C -0.16 -1.95 10.05 22.54 0.23 -1.72 16 7 C -0.03 -0.36 10.16 22.42 0.23 -0.13 16 8 C -0.15 -2.57 9.63 22.62 0.22 -2.35 16 9 C 0.10 2.11 6.75 41.84 0.28 2.39 16 10 C 0.57 14.84 7.78 86.88 0.68 15.51 16 11 O -0.56 -17.84 15.98 -3.79 -0.06 -17.90 16 12 N -0.69 -16.49 5.07 -445.11 -2.26 -18.75 16 13 C 0.15 4.08 2.46 44.99 0.11 4.19 16 14 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 15 C -0.12 -2.81 5.49 30.59 0.17 -2.65 16 16 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 17 C -0.13 -4.27 5.50 30.59 0.17 -4.10 16 18 C 0.18 6.72 2.77 44.99 0.12 6.84 16 19 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 20 N -0.75 -34.34 4.92 -322.93 -1.59 -35.93 16 21 C -0.23 -12.97 10.41 84.04 0.87 -12.09 16 22 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 23 C -0.07 -3.99 5.50 84.87 0.47 -3.52 16 24 N -0.99 -63.77 13.97 21.65 0.30 -63.46 16 25 Si 0.96 45.11 27.74 68.60 1.90 47.01 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 29 C -0.12 -3.41 4.86 30.59 0.15 -3.26 16 30 N -0.53 -10.67 7.82 -298.21 -2.33 -13.00 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.36 6.98 -2.38 -0.02 1.35 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.15 2.49 7.63 -2.91 -0.02 2.47 16 41 H 0.42 8.60 7.93 -92.71 -0.74 7.86 16 42 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.37 15.83 5.66 -92.71 -0.52 15.31 16 49 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 50 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -73.57 413.24 0.68 -72.89 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.39 Total: 34.10 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.98 Total: 1.23 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -5.87 Total: -131.14 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.94 Total: -24.09 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Total: -73.57 0.68 -72.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981425743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.215 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds