Wall clock time and date at job start Wed Apr 1 2020 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 O 1.42903 * 109.46923 * 240.00539 * 2 1 3 5 5 C 1.35685 * 116.99767 * 210.00352 * 4 2 1 6 6 C 1.38893 * 119.61993 * 179.97438 * 5 4 2 7 7 C 1.39583 * 118.94453 * 179.97438 * 6 5 4 8 8 C 1.48157 * 120.89009 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00269 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99826 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99860 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46874 * 325.00123 * 11 10 8 13 13 C 1.53004 * 109.46906 * 85.00063 * 11 10 8 14 14 C 1.52999 * 109.47104 * 60.00014 * 13 11 10 15 15 C 1.53008 * 109.47003 * 59.99945 * 14 13 11 16 16 C 1.52996 * 109.46843 * 299.99802 * 15 14 13 17 17 H 1.08999 * 109.47345 * 300.00155 * 16 15 14 18 18 N 1.46498 * 109.47078 * 180.02562 * 16 15 14 19 19 C 1.36945 * 120.00257 * 84.99814 * 18 16 15 20 20 H 1.08000 * 119.99500 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00011 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99832 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99925 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46803 * 90.00356 * 23 21 19 25 25 H 1.48504 * 109.46705 * 209.99973 * 23 21 19 26 26 H 1.48499 * 109.47197 * 330.00227 * 23 21 19 27 27 C 1.52994 * 109.47459 * 60.00432 * 16 15 14 28 28 C 1.39960 * 118.21521 * 359.97438 * 7 6 5 29 29 C 1.37977 * 119.13664 * 0.02562 * 28 7 6 30 30 N 1.31911 * 120.97757 * 359.74107 * 29 28 7 31 31 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 32 32 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 34 34 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 37 37 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 38 38 H 1.07995 * 120.52939 * 359.95336 * 6 5 4 39 39 H 0.96994 * 120.00014 * 0.02562 * 10 8 7 40 40 H 1.09007 * 109.46714 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47432 * 299.99485 * 13 11 10 42 42 H 1.09006 * 109.47048 * 179.97438 * 14 13 11 43 43 H 1.08999 * 109.47105 * 299.99840 * 14 13 11 44 44 H 1.08999 * 109.47276 * 59.99999 * 15 14 13 45 45 H 1.09003 * 109.46791 * 179.97438 * 15 14 13 46 46 H 0.97001 * 119.99925 * 265.00112 * 18 16 15 47 47 H 0.97001 * 119.99740 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.47730 * 180.02562 * 27 16 15 49 49 H 1.08999 * 109.47068 * 59.99553 * 27 16 15 50 50 H 1.08001 * 120.43183 * 180.02562 * 28 7 6 51 51 H 1.08006 * 119.51207 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 3.1987 -1.3130 -1.0654 6 6 3.7128 -1.9858 -2.1664 7 6 4.9408 -2.6383 -2.0464 8 6 5.5289 -3.3694 -3.1931 9 8 4.9413 -3.4062 -4.2561 10 7 6.7161 -3.9928 -3.0574 11 6 7.2979 -4.7153 -4.1914 12 1 6.5015 -5.1757 -4.7760 13 6 8.0778 -3.7377 -5.0729 14 6 9.1957 -3.0913 -4.2523 15 6 10.1413 -4.1771 -3.7344 16 6 9.3613 -5.1545 -2.8529 17 1 8.9285 -4.6170 -2.0093 18 7 10.2668 -6.1937 -2.3566 19 6 11.0094 -5.9726 -1.2274 20 1 10.9273 -5.0323 -0.7026 21 6 11.8678 -6.9572 -0.7574 22 7 12.5819 -6.7445 0.3275 23 14 12.0093 -8.5839 -1.6649 24 1 13.0805 -8.4878 -2.6889 25 1 12.3427 -9.6618 -0.6993 26 1 10.7173 -8.8950 -2.3276 27 6 8.2435 -5.8009 -3.6735 28 6 5.6017 -2.5835 -0.8139 29 6 5.0207 -1.8928 0.2297 30 7 3.8604 -1.2839 0.0784 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6768 1.9562 0.8901 38 1 3.1709 -2.0040 -3.1003 39 1 7.1853 -3.9631 -2.2090 40 1 8.5110 -4.2754 -5.9164 41 1 7.4042 -2.9644 -5.4419 42 1 9.7516 -2.3952 -4.8805 43 1 8.7628 -2.5538 -3.4086 44 1 10.5741 -4.7146 -4.5781 45 1 10.9379 -3.7165 -3.1502 46 1 10.3403 -7.0384 -2.8278 47 1 13.1815 -7.4326 0.6562 48 1 7.6875 -6.4970 -3.0454 49 1 8.6763 -6.3384 -4.5172 50 1 6.5541 -3.0753 -0.6815 51 1 5.5253 -1.8469 1.1836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981453921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:21 Heat of formation + Delta-G solvation = -37.037375 kcal Electronic energy + Delta-G solvation = -30572.133997 eV Core-core repulsion = 26471.681156 eV Total energy + Delta-G solvation = -4100.452841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16297 -40.12075 -38.59363 -37.84824 -34.73377 -33.69960 -33.38437 -32.63472 -31.41269 -30.48117 -29.65971 -28.39964 -27.62239 -25.28886 -23.64647 -23.52880 -22.52536 -22.05372 -21.04566 -20.74979 -19.19125 -18.93227 -17.68453 -17.47995 -16.56711 -16.09778 -16.00941 -15.58905 -15.47080 -14.94704 -14.71556 -14.70663 -14.50468 -14.13336 -13.95456 -13.86245 -13.71547 -13.40946 -12.89549 -12.74492 -12.68760 -12.67132 -12.34121 -12.28469 -12.20758 -12.01899 -11.87392 -11.32716 -11.29708 -11.13120 -11.05858 -10.96768 -10.50074 -10.34644 -10.34025 -10.17938 -10.13439 -9.81719 -9.78194 -9.64048 -9.09636 -8.94261 -8.80437 -7.34325 -5.83514 -3.19583 0.45942 0.87789 2.57142 2.73505 3.09342 3.32741 3.35761 3.41434 3.59356 3.97269 4.35787 4.50708 4.53271 4.61907 4.66822 4.72505 4.77012 4.85412 4.90988 4.95770 5.01986 5.18475 5.33773 5.37100 5.39065 5.40665 5.43440 5.47673 5.51477 5.54723 5.56422 5.70317 5.74569 5.77758 5.81009 5.83266 5.89055 5.94851 6.05288 6.07308 6.16469 6.32881 6.35168 6.47877 6.56723 6.78063 6.92545 6.97253 7.38998 7.51701 7.91299 8.04127 8.35316 9.13433 9.86260 10.05523 11.34535 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002278 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.718054 B =12290.572585 C =13333.328706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.300 6.300 5 C 0.320 3.680 6 C -0.136 4.136 7 C -0.051 4.051 8 C 0.559 3.441 9 O -0.532 6.532 10 N -0.707 5.707 11 C 0.152 3.848 12 H 0.088 0.912 13 C -0.129 4.129 14 C -0.116 4.116 15 C -0.137 4.137 16 C 0.185 3.815 17 H 0.049 0.951 18 N -0.748 5.748 19 C -0.245 4.245 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.138 4.138 28 C -0.180 4.180 29 C 0.141 3.859 30 N -0.527 5.527 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.153 0.847 39 H 0.405 0.595 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.145 0.855 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 12.895 -3.464 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.208 6.208 5 C 0.141 3.859 6 C -0.157 4.157 7 C -0.061 4.061 8 C 0.344 3.656 9 O -0.410 6.410 10 N -0.360 5.360 11 C 0.048 3.952 12 H 0.106 0.894 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.178 4.178 16 C 0.075 3.925 17 H 0.067 0.933 18 N -0.390 5.390 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.177 4.177 28 C -0.201 4.201 29 C -0.014 4.014 30 N -0.252 5.252 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.170 0.830 39 H 0.243 0.757 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.096 0.904 50 H 0.163 0.837 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.211 13.411 -3.534 25.343 hybrid contribution 1.009 -1.555 -0.574 1.940 sum -20.201 11.857 -4.108 23.781 Atomic orbital electron populations 1.21913 0.92824 1.03077 1.03013 1.22371 0.94471 0.92777 0.87908 1.22219 1.02224 0.95571 1.02610 1.86315 1.31396 1.64332 1.38733 1.19630 0.86372 0.90427 0.89461 1.21101 0.96051 0.99157 0.99425 1.20163 0.94486 0.97173 0.94302 1.18066 0.81211 0.79097 0.87188 1.90770 1.61443 1.60842 1.27900 1.46115 1.20625 1.52974 1.16240 1.21004 0.95331 0.92047 0.86863 0.89426 1.21920 0.97596 0.98985 0.98220 1.21510 0.96512 0.98184 0.99225 1.22257 0.98644 0.96876 0.99986 1.20118 0.88996 0.89743 0.93619 0.93327 1.42782 1.50069 1.14923 1.31269 1.19036 1.16190 1.01683 1.00537 0.89219 1.24679 0.98937 0.98037 0.97431 1.69698 1.30023 1.34429 1.23843 0.86559 0.77716 0.84995 0.79278 1.21115 1.21785 1.20320 1.22188 0.97109 0.97261 1.01156 1.22255 1.02205 1.02489 0.93131 1.22426 0.89345 0.90711 0.98966 1.67151 1.10549 1.22952 1.24503 0.91593 0.91770 0.90446 0.89156 0.91916 0.91971 0.91055 0.82965 0.75740 0.90959 0.91852 0.92555 0.92470 0.92564 0.91486 0.80599 0.93028 0.91013 0.90398 0.83704 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.56 37.16 0.36 -0.60 16 2 C 0.08 0.69 3.10 -26.73 -0.08 0.60 16 3 C -0.17 -1.26 9.53 37.16 0.35 -0.91 16 4 O -0.30 -3.30 9.76 -18.76 -0.18 -3.48 16 5 C 0.32 3.71 7.45 -17.16 -0.13 3.59 16 6 C -0.14 -1.62 9.61 -38.84 -0.37 -1.99 16 7 C -0.05 -0.59 5.91 -104.68 -0.62 -1.21 16 8 C 0.56 7.36 7.76 -12.19 -0.09 7.27 16 9 O -0.53 -8.49 16.10 5.35 0.09 -8.41 16 10 N -0.71 -8.52 4.19 -54.65 -0.23 -8.75 16 11 C 0.15 1.90 2.78 -67.92 -0.19 1.71 16 12 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 13 C -0.13 -1.57 5.60 -26.73 -0.15 -1.71 16 14 C -0.12 -1.49 5.77 -26.73 -0.15 -1.64 16 15 C -0.14 -2.16 5.50 -26.73 -0.15 -2.30 16 16 C 0.18 3.10 2.60 -67.94 -0.18 2.93 16 17 H 0.05 0.82 6.44 -51.93 -0.33 0.48 16 18 N -0.75 -16.27 4.93 -53.43 -0.26 -16.53 16 19 C -0.24 -6.47 10.41 -15.06 -0.16 -6.62 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -28.30 13.97 55.49 0.78 -27.52 16 23 Si 0.88 21.37 27.74 -169.99 -4.71 16.65 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.26 6.52 56.52 0.37 -5.90 16 27 C -0.14 -1.92 5.08 -26.73 -0.14 -2.05 16 28 C -0.18 -1.77 9.61 -39.03 -0.38 -2.15 16 29 C 0.14 1.33 11.17 -17.61 -0.20 1.13 16 30 N -0.53 -5.76 8.62 -13.38 -0.12 -5.87 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.81 6.98 -51.93 -0.36 0.45 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.15 1.81 7.74 -52.49 -0.41 1.41 16 39 H 0.40 4.53 5.00 -40.82 -0.20 4.33 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.36 7.83 5.66 -40.82 -0.23 7.60 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.15 1.20 6.53 -52.49 -0.34 0.86 16 51 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -32.06 406.80 -9.06 -41.12 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.18 Total: 10.57 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.36 Total: -3.91 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.17 Total: -58.68 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.10 Total: -11.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.06 -9.06 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981453921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds