Wall clock time and date at job start Wed Apr 1 2020 04:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 O 1.42903 * 109.46923 * 240.00539 * 2 1 3 5 5 C 1.35685 * 116.99767 * 210.00352 * 4 2 1 6 6 C 1.38893 * 119.61993 * 179.97438 * 5 4 2 7 7 C 1.39583 * 118.94453 * 179.97438 * 6 5 4 8 8 C 1.48157 * 120.89009 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00269 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99826 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99860 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46874 * 325.00123 * 11 10 8 13 13 C 1.53004 * 109.46906 * 85.00063 * 11 10 8 14 14 C 1.52999 * 109.47104 * 60.00014 * 13 11 10 15 15 C 1.53008 * 109.47003 * 59.99945 * 14 13 11 16 16 C 1.52996 * 109.46843 * 299.99802 * 15 14 13 17 17 H 1.08999 * 109.47345 * 300.00155 * 16 15 14 18 18 N 1.46498 * 109.47078 * 180.02562 * 16 15 14 19 19 C 1.36945 * 120.00257 * 84.99814 * 18 16 15 20 20 H 1.08000 * 119.99500 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00011 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99832 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99925 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46803 * 90.00356 * 23 21 19 25 25 H 1.48504 * 109.46705 * 209.99973 * 23 21 19 26 26 H 1.48499 * 109.47197 * 330.00227 * 23 21 19 27 27 C 1.52994 * 109.47459 * 60.00432 * 16 15 14 28 28 C 1.39960 * 118.21521 * 359.97438 * 7 6 5 29 29 C 1.37977 * 119.13664 * 0.02562 * 28 7 6 30 30 N 1.31911 * 120.97757 * 359.74107 * 29 28 7 31 31 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 32 32 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 34 34 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 37 37 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 38 38 H 1.07995 * 120.52939 * 359.95336 * 6 5 4 39 39 H 0.96994 * 120.00014 * 0.02562 * 10 8 7 40 40 H 1.09007 * 109.46714 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47432 * 299.99485 * 13 11 10 42 42 H 1.09006 * 109.47048 * 179.97438 * 14 13 11 43 43 H 1.08999 * 109.47105 * 299.99840 * 14 13 11 44 44 H 1.08999 * 109.47276 * 59.99999 * 15 14 13 45 45 H 1.09003 * 109.46791 * 179.97438 * 15 14 13 46 46 H 0.97001 * 119.99925 * 265.00112 * 18 16 15 47 47 H 0.97001 * 119.99740 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.47730 * 180.02562 * 27 16 15 49 49 H 1.08999 * 109.47068 * 59.99553 * 27 16 15 50 50 H 1.08001 * 120.43183 * 180.02562 * 28 7 6 51 51 H 1.08006 * 119.51207 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 3.1987 -1.3130 -1.0654 6 6 3.7128 -1.9858 -2.1664 7 6 4.9408 -2.6383 -2.0464 8 6 5.5289 -3.3694 -3.1931 9 8 4.9413 -3.4062 -4.2561 10 7 6.7161 -3.9928 -3.0574 11 6 7.2979 -4.7153 -4.1914 12 1 6.5015 -5.1757 -4.7760 13 6 8.0778 -3.7377 -5.0729 14 6 9.1957 -3.0913 -4.2523 15 6 10.1413 -4.1771 -3.7344 16 6 9.3613 -5.1545 -2.8529 17 1 8.9285 -4.6170 -2.0093 18 7 10.2668 -6.1937 -2.3566 19 6 11.0094 -5.9726 -1.2274 20 1 10.9273 -5.0323 -0.7026 21 6 11.8678 -6.9572 -0.7574 22 7 12.5819 -6.7445 0.3275 23 14 12.0093 -8.5839 -1.6649 24 1 13.0805 -8.4878 -2.6889 25 1 12.3427 -9.6618 -0.6993 26 1 10.7173 -8.8950 -2.3276 27 6 8.2435 -5.8009 -3.6735 28 6 5.6017 -2.5835 -0.8139 29 6 5.0207 -1.8928 0.2297 30 7 3.8604 -1.2839 0.0784 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6768 1.9562 0.8901 38 1 3.1709 -2.0040 -3.1003 39 1 7.1853 -3.9631 -2.2090 40 1 8.5110 -4.2754 -5.9164 41 1 7.4042 -2.9644 -5.4419 42 1 9.7516 -2.3952 -4.8805 43 1 8.7628 -2.5538 -3.4086 44 1 10.5741 -4.7146 -4.5781 45 1 10.9379 -3.7165 -3.1502 46 1 10.3403 -7.0384 -2.8278 47 1 13.1815 -7.4326 0.6562 48 1 7.6875 -6.4970 -3.0454 49 1 8.6763 -6.3384 -4.5172 50 1 6.5541 -3.0753 -0.6815 51 1 5.5253 -1.8469 1.1836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981453921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:20 Heat of formation + Delta-G solvation = -57.923889 kcal Electronic energy + Delta-G solvation = -30573.039704 eV Core-core repulsion = 26471.681156 eV Total energy + Delta-G solvation = -4101.358548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04479 -41.12286 -39.56579 -38.87667 -36.28567 -34.72727 -34.23855 -33.71220 -33.13950 -31.35243 -30.77860 -29.85282 -28.16914 -26.20483 -25.33300 -24.45398 -23.52060 -23.04296 -22.42702 -21.61941 -20.41019 -19.88662 -19.47503 -18.33117 -17.48146 -17.12832 -16.81774 -16.63365 -16.61335 -16.37161 -16.01742 -15.50470 -15.42835 -15.35273 -15.01346 -14.89819 -14.79911 -14.64343 -14.23800 -14.12677 -13.72125 -13.29613 -13.19948 -13.12724 -13.11030 -13.00642 -12.95662 -12.87754 -12.83182 -12.38809 -11.95685 -11.93887 -11.80539 -11.79498 -11.63472 -11.53450 -11.35152 -11.08195 -11.03169 -10.86401 -10.68608 -10.11263 -9.61515 -9.25963 -7.97604 -5.30044 -0.43729 0.05611 1.41285 1.43542 1.50860 1.74381 1.75703 2.18004 2.52312 2.72788 3.21130 3.34265 3.41283 3.51355 3.83379 3.84405 3.87935 3.91327 3.98000 4.01245 4.02997 4.18118 4.27593 4.28218 4.33559 4.53381 4.59170 4.64519 4.68356 4.69515 4.70334 4.80598 4.82728 4.84579 4.88822 4.91421 4.94899 5.09127 5.16543 5.19404 5.21658 5.25849 5.32589 5.37740 5.43314 5.51328 5.63491 5.83586 6.19769 6.26451 6.38602 6.69861 7.02484 7.13312 7.90164 8.07704 9.23574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002278 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.718054 B =12290.572585 C =13333.328706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.164 4.164 4 O -0.313 6.313 5 C 0.312 3.688 6 C -0.149 4.149 7 C -0.059 4.059 8 C 0.562 3.438 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.157 3.843 12 H 0.090 0.910 13 C -0.123 4.123 14 C -0.107 4.107 15 C -0.129 4.129 16 C 0.178 3.822 17 H 0.049 0.951 18 N -0.752 5.752 19 C -0.220 4.220 20 H 0.062 0.938 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.949 3.051 24 H -0.283 1.283 25 H -0.302 1.302 26 H -0.249 1.249 27 C -0.126 4.126 28 C -0.175 4.175 29 C 0.142 3.858 30 N -0.532 5.532 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.145 0.855 39 H 0.410 0.590 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.364 0.636 47 H 0.255 0.745 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.161 0.839 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.555 12.886 -4.299 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 C -0.221 4.221 4 O -0.221 6.221 5 C 0.134 3.866 6 C -0.171 4.171 7 C -0.070 4.070 8 C 0.348 3.652 9 O -0.443 6.443 10 N -0.353 5.353 11 C 0.052 3.948 12 H 0.108 0.892 13 C -0.161 4.161 14 C -0.145 4.145 15 C -0.169 4.169 16 C 0.070 3.930 17 H 0.067 0.933 18 N -0.394 5.394 19 C -0.351 4.351 20 H 0.080 0.920 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.778 3.222 24 H -0.210 1.210 25 H -0.229 1.229 26 H -0.173 1.173 27 C -0.165 4.165 28 C -0.195 4.195 29 C -0.013 4.013 30 N -0.256 5.256 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.163 0.837 39 H 0.248 0.752 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.198 0.802 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.108 0.892 50 H 0.179 0.821 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -22.444 13.428 -4.409 26.523 hybrid contribution 1.338 -1.422 -0.270 1.971 sum -21.106 12.005 -4.679 24.728 Atomic orbital electron populations 1.21927 0.91160 1.03187 1.04131 1.22618 0.95772 0.92950 0.86885 1.22192 1.01153 0.95160 1.03643 1.86304 1.31218 1.64486 1.40086 1.19700 0.86736 0.90612 0.89565 1.21097 0.96488 1.00049 0.99466 1.20098 0.94708 0.97594 0.94568 1.18226 0.81077 0.78766 0.87095 1.90752 1.62264 1.62086 1.29160 1.46067 1.20303 1.52489 1.16402 1.20958 0.95066 0.91830 0.86929 0.89213 1.21878 0.97052 0.98849 0.98333 1.21422 0.96181 0.97373 0.99544 1.22100 0.98277 0.97229 0.99343 1.20375 0.89195 0.89113 0.94314 0.93321 1.42818 1.50265 1.16271 1.30060 1.19013 1.15166 1.00020 1.00866 0.92029 1.25450 0.99585 1.02036 0.98700 1.69875 1.31775 1.35624 1.26250 0.85486 0.78791 0.80163 0.77782 1.21000 1.22927 1.17333 1.22054 0.96004 0.97428 1.01013 1.22441 1.02552 1.02143 0.92396 1.22970 0.88790 0.89551 0.99979 1.67233 1.11062 1.23159 1.24169 0.91488 0.92172 0.88275 0.89740 0.93482 0.91915 0.89025 0.83747 0.75185 0.89574 0.92043 0.91401 0.92341 0.92342 0.94241 0.80246 0.93618 0.91043 0.89171 0.82101 0.78481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.56 71.98 0.69 -0.99 16 2 C 0.07 1.19 3.10 30.60 0.09 1.29 16 3 C -0.16 -2.29 9.53 71.98 0.69 -1.61 16 4 O -0.31 -6.87 9.76 -90.04 -0.88 -7.75 16 5 C 0.31 7.20 7.45 84.80 0.63 7.84 16 6 C -0.15 -3.58 9.61 22.75 0.22 -3.36 16 7 C -0.06 -1.34 5.91 -19.90 -0.12 -1.46 16 8 C 0.56 14.26 7.76 86.88 0.67 14.93 16 9 O -0.56 -17.66 16.10 -3.77 -0.06 -17.72 16 10 N -0.70 -15.67 4.19 -445.09 -1.87 -17.53 16 11 C 0.16 3.55 2.78 44.99 0.13 3.67 16 12 H 0.09 2.10 7.58 -2.39 -0.02 2.08 16 13 C -0.12 -2.66 5.60 30.60 0.17 -2.49 16 14 C -0.11 -2.51 5.77 30.60 0.18 -2.33 16 15 C -0.13 -3.85 5.50 30.60 0.17 -3.69 16 16 C 0.18 5.66 2.60 44.99 0.12 5.77 16 17 H 0.05 1.56 6.44 -2.39 -0.02 1.54 16 18 N -0.75 -31.51 4.93 -322.96 -1.59 -33.10 16 19 C -0.22 -11.60 10.41 84.03 0.87 -10.72 16 20 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 22 N -0.98 -61.11 13.97 21.65 0.30 -60.81 16 23 Si 0.95 43.79 27.74 68.60 1.90 45.70 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 26 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 27 C -0.13 -3.16 5.08 30.59 0.16 -3.00 16 28 C -0.17 -3.17 9.61 22.63 0.22 -2.96 16 29 C 0.14 2.45 11.17 84.62 0.94 3.39 16 30 N -0.53 -11.12 8.62 -309.14 -2.66 -13.79 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.46 6.98 -2.39 -0.02 1.44 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.14 3.59 7.74 -2.91 -0.02 3.57 16 39 H 0.41 8.41 5.00 -92.71 -0.46 7.95 16 40 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.06 1.36 7.60 -2.39 -0.02 1.35 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.36 14.84 5.66 -92.71 -0.52 14.31 16 47 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.16 2.34 6.53 -2.91 -0.02 2.32 16 51 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -70.08 406.80 1.33 -68.75 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.11 Total: 35.25 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 6.29 Total: 1.00 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.82 Total: -125.22 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.94 Total: -25.47 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.90 Total: 45.70 kcal Total: -70.08 1.33 -68.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981453921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.822 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds