Wall clock time and date at job start Wed Apr 1 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 O 1.42904 * 109.47070 * 120.00282 * 2 1 3 5 5 C 1.35683 * 116.99741 * 150.00319 * 4 2 1 6 6 C 1.38899 * 119.62082 * 180.02562 * 5 4 2 7 7 C 1.39569 * 118.94773 * 179.74275 * 6 5 4 8 8 C 1.48158 * 120.89168 * 180.24788 * 7 6 5 9 9 O 1.21513 * 120.00396 * 0.22123 * 8 7 6 10 10 N 1.34778 * 120.00011 * 180.22324 * 8 7 6 11 11 C 1.46497 * 120.00310 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47070 * 35.00439 * 11 10 8 13 13 C 1.52998 * 109.47294 * 275.00286 * 11 10 8 14 14 C 1.53008 * 109.46868 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47225 * 60.00096 * 14 13 11 16 16 C 1.52998 * 109.47119 * 299.99751 * 15 14 13 17 17 H 1.09008 * 109.47145 * 300.00315 * 16 15 14 18 18 N 1.46495 * 109.47179 * 180.02562 * 16 15 14 19 19 C 1.36934 * 120.00157 * 85.00051 * 18 16 15 20 20 H 1.07996 * 120.00385 * 359.97438 * 19 18 16 21 21 C 1.38822 * 120.00072 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99640 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99977 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47047 * 89.99930 * 23 21 19 25 25 H 1.48503 * 109.47051 * 209.99667 * 23 21 19 26 26 H 1.48501 * 109.47160 * 329.99873 * 23 21 19 27 27 C 1.52998 * 109.47412 * 154.99753 * 11 10 8 28 28 C 1.39965 * 118.21576 * 0.46879 * 7 6 5 29 29 C 1.37983 * 119.13532 * 359.52397 * 28 7 6 30 30 N 1.31913 * 120.97368 * 0.23914 * 29 28 7 31 31 H 1.09002 * 109.46922 * 299.99843 * 1 2 3 32 32 H 1.09004 * 109.46785 * 59.99592 * 1 2 3 33 33 H 1.08992 * 109.47566 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46922 * 240.00157 * 2 1 3 35 35 H 1.08995 * 109.47656 * 300.00107 * 3 2 1 36 36 H 1.09002 * 109.47131 * 60.00285 * 3 2 1 37 37 H 1.09007 * 109.46944 * 180.02562 * 3 2 1 38 38 H 1.08004 * 120.52191 * 0.02562 * 6 5 4 39 39 H 0.97004 * 119.99908 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.47027 * 299.99213 * 13 11 10 41 41 H 1.08996 * 109.47205 * 59.99945 * 13 11 10 42 42 H 1.08996 * 109.46745 * 299.99498 * 14 13 11 43 43 H 1.09001 * 109.46517 * 180.02562 * 14 13 11 44 44 H 1.09000 * 109.47148 * 179.97438 * 15 14 13 45 45 H 1.08998 * 109.47284 * 59.99406 * 15 14 13 46 46 H 0.97000 * 119.99912 * 264.99471 * 18 16 15 47 47 H 0.96998 * 119.99628 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.47175 * 300.00824 * 27 11 10 49 49 H 1.09003 * 109.47178 * 60.00181 * 27 11 10 50 50 H 1.08002 * 120.43609 * 179.80913 * 28 7 6 51 51 H 1.07990 * 119.51235 * 180.25180 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1988 -1.3130 1.0652 6 6 3.7129 -1.9860 2.1661 7 6 4.9381 -2.6433 2.0444 8 6 5.5237 -3.3789 3.1895 9 8 4.9344 -3.4189 4.2514 10 7 6.7102 -4.0036 3.0533 11 6 7.2896 -4.7305 4.1856 12 1 6.4918 -5.1917 4.7678 13 6 8.0698 -3.7569 5.0712 14 6 8.6744 -4.5161 6.2541 15 6 9.6188 -5.6017 5.7344 16 6 8.8386 -6.5753 4.8488 17 1 8.0404 -7.0361 5.4309 18 7 9.7428 -7.6151 4.3517 19 6 9.9996 -8.7219 5.1161 20 1 9.5359 -8.8280 6.0857 21 6 10.8569 -9.7070 4.6452 22 7 11.4224 -9.5774 3.4638 23 14 11.2078 -11.2164 5.6883 24 1 10.2170 -12.2768 5.3735 25 1 12.5757 -11.7140 5.3944 26 1 11.1096 -10.8582 7.1261 27 6 8.2341 -5.8159 3.6655 28 6 5.6009 -2.5851 0.8130 29 6 5.0198 -1.8944 -0.2306 30 7 3.8576 -1.2888 -0.0803 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 3.1710 -2.0041 3.1002 39 1 7.1805 -3.9720 2.2055 40 1 8.8676 -3.2958 4.4890 41 1 7.3969 -2.9837 5.4418 42 1 7.8763 -4.9768 6.8362 43 1 9.2298 -3.8223 6.8852 44 1 10.0499 -6.1422 6.5771 45 1 10.4168 -5.1409 5.1523 46 1 10.1595 -7.5198 3.4810 47 1 12.0211 -10.2660 3.1346 48 1 7.6782 -6.5095 3.0345 49 1 9.0319 -5.3548 3.0832 50 1 6.5524 -3.0783 0.6800 51 1 5.5240 -1.8490 -1.1846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981453923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:26 Heat of formation + Delta-G solvation = -43.649354 kcal Electronic energy + Delta-G solvation = -29808.826769 eV Core-core repulsion = 25708.087211 eV Total energy + Delta-G solvation = -4100.739558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.22939 -40.00702 -38.56983 -37.82911 -34.82257 -33.76155 -33.50984 -32.81403 -31.15275 -30.55964 -29.35433 -27.82677 -27.68174 -25.31232 -23.77628 -23.70507 -22.56427 -21.90608 -21.10088 -20.45219 -19.67610 -18.83852 -17.57160 -17.11594 -16.79979 -16.10996 -16.03246 -15.94371 -15.21330 -14.99601 -14.75990 -14.48928 -14.41261 -14.19825 -13.96219 -13.78317 -13.59729 -13.48540 -13.17523 -12.76786 -12.74533 -12.71134 -12.36496 -12.32812 -12.18211 -12.10327 -11.37440 -11.21160 -11.01783 -10.99523 -10.90143 -10.75745 -10.51784 -10.38368 -10.28948 -10.24192 -10.17357 -9.99547 -9.75032 -9.62928 -9.08843 -8.90535 -8.88858 -6.98294 -5.78821 -3.07389 0.36907 0.76689 2.49244 2.67077 3.01316 3.42659 3.48281 3.49449 3.50023 3.86188 4.26328 4.43879 4.55094 4.55430 4.57183 4.63021 4.67871 4.83493 4.94136 5.04025 5.12500 5.25041 5.27792 5.32326 5.34746 5.38785 5.43322 5.47492 5.56744 5.64813 5.67489 5.68393 5.71276 5.75959 5.83587 5.93281 5.97023 5.98571 6.10902 6.23436 6.28374 6.46679 6.49727 6.57422 6.69758 6.88680 6.93964 7.09773 7.33315 7.41198 7.69439 7.99815 8.39907 9.51247 10.08132 10.42883 11.43861 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.001743 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.978688 B =16060.599898 C =16513.734775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.299 6.299 5 C 0.322 3.678 6 C -0.135 4.135 7 C -0.049 4.049 8 C 0.557 3.443 9 O -0.526 6.526 10 N -0.712 5.712 11 C 0.148 3.852 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.183 3.817 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.130 4.130 28 C -0.183 4.183 29 C 0.139 3.861 30 N -0.528 5.528 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.154 0.846 39 H 0.400 0.600 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.143 0.857 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 22.113 -9.165 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.143 3.857 6 C -0.156 4.156 7 C -0.060 4.060 8 C 0.342 3.658 9 O -0.402 6.402 10 N -0.362 5.362 11 C 0.044 3.956 12 H 0.109 0.891 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.364 5.364 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.169 4.169 28 C -0.204 4.204 29 C -0.016 4.016 30 N -0.253 5.253 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.172 0.828 39 H 0.235 0.765 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.161 0.839 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.644 22.386 -8.733 29.811 hybrid contribution 1.144 -1.158 0.235 1.644 sum -16.500 21.228 -8.498 28.198 Atomic orbital electron populations 1.21916 0.92749 1.03146 1.03063 1.22380 0.94552 0.92748 0.87844 1.22221 1.02136 0.95581 1.02681 1.86327 1.31304 1.64260 1.38766 1.19637 0.86359 0.90306 0.89363 1.21142 0.96090 0.98874 0.99538 1.20197 0.94490 0.96941 0.94332 1.18069 0.81278 0.79226 0.87204 1.90796 1.61042 1.60520 1.27883 1.46073 1.20892 1.53111 1.16171 1.21120 0.96027 0.91904 0.86523 0.89148 1.21889 0.99192 0.98021 0.97193 1.21487 0.99248 0.97913 0.96686 1.22293 0.98302 0.96472 1.00665 1.20105 0.92152 0.88599 0.91854 0.93301 1.42387 1.53309 1.19760 1.20962 1.19251 1.21913 0.96426 0.99318 0.91122 1.24734 1.00158 0.98974 0.97088 1.69658 1.34847 1.35260 1.18431 0.86202 0.77268 0.83271 0.79536 1.21747 1.21810 1.20748 1.22114 0.98159 0.96586 1.00006 1.22192 1.02162 1.02806 0.93230 1.22382 0.89425 0.90987 0.98825 1.67138 1.10562 1.23052 1.24526 0.91544 0.90415 0.91722 0.89174 0.91030 0.91913 0.91986 0.82835 0.76467 0.91949 0.92107 0.92112 0.92428 0.91834 0.92637 0.78338 0.93553 0.91196 0.91605 0.83893 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.56 37.16 0.36 -0.52 16 2 C 0.08 0.62 3.11 -26.73 -0.08 0.54 16 3 C -0.17 -1.12 9.53 37.16 0.35 -0.77 16 4 O -0.30 -3.08 9.76 -18.75 -0.18 -3.26 16 5 C 0.32 3.45 7.45 -17.16 -0.13 3.32 16 6 C -0.13 -1.51 9.61 -38.84 -0.37 -1.88 16 7 C -0.05 -0.52 5.91 -104.68 -0.62 -1.14 16 8 C 0.56 7.10 7.76 -12.19 -0.09 7.01 16 9 O -0.53 -8.54 16.10 5.35 0.09 -8.45 16 10 N -0.71 -8.01 5.04 -54.65 -0.28 -8.29 16 11 C 0.15 1.99 2.45 -67.93 -0.17 1.82 16 12 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 13 C -0.12 -1.62 5.49 -26.73 -0.15 -1.77 16 14 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 15 C -0.14 -2.34 5.50 -26.73 -0.15 -2.49 16 16 C 0.18 3.46 2.77 -67.91 -0.19 3.27 16 17 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 18 N -0.72 -17.46 5.12 -53.40 -0.27 -17.73 16 19 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.13 -1.96 4.86 -26.71 -0.13 -2.09 16 28 C -0.18 -1.45 9.61 -39.03 -0.38 -1.83 16 29 C 0.14 1.06 11.17 -17.61 -0.20 0.87 16 30 N -0.53 -5.11 8.61 -13.38 -0.12 -5.22 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.73 6.98 -51.93 -0.36 0.36 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.15 1.76 7.74 -52.48 -0.41 1.36 16 39 H 0.40 3.43 6.74 -40.82 -0.28 3.15 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.14 0.76 6.53 -52.49 -0.34 0.42 16 51 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 414.35 15.07 6.24 6.24 Total: -1.00 -32.44 414.35 -9.56 -42.00 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.41 Total: 9.00 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.34 Total: -4.50 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.06 Total: -58.20 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.10 Total: -11.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.44 -9.56 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981453923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.650 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds